Wall clock time and date at job start Tue Mar 31 2020 13:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42894 * 109.47331 * 2 1 4 4 C 1.35982 * 117.00097 * 179.97438 * 3 2 1 5 5 C 1.38729 * 120.07012 * 0.02562 * 4 3 2 6 6 C 1.37941 * 119.90623 * 180.02562 * 5 4 3 7 7 C 1.39130 * 120.29114 * 359.97438 * 6 5 4 8 8 C 1.38350 * 119.78271 * 359.84768 * 7 6 5 9 9 C 1.38508 * 119.88604 * 0.22548 * 8 7 6 10 10 C 1.50780 * 121.41345 * 180.24888 * 8 7 6 11 11 H 1.09004 * 109.40379 * 102.22748 * 10 8 7 12 12 N 1.46902 * 109.43720 * 222.12118 * 10 8 7 13 13 C 1.46907 * 110.99898 * 202.13758 * 12 10 8 14 14 C 1.53002 * 109.46843 * 185.83417 * 13 12 10 15 15 H 1.08997 * 109.47258 * 54.99684 * 14 13 12 16 16 C 1.52999 * 109.47060 * 294.99431 * 14 13 12 17 17 C 1.53003 * 109.46838 * 175.00097 * 14 13 12 18 18 C 1.50700 * 109.46875 * 185.00052 * 17 14 13 19 19 H 1.08004 * 120.00108 * 359.97438 * 18 17 14 20 20 C 1.37873 * 119.99659 * 179.97438 * 18 17 14 21 21 N 1.31514 * 120.00304 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99895 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47037 * 59.99343 * 22 20 18 24 24 H 1.48498 * 109.47206 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46887 * 300.00138 * 22 20 18 26 26 C 1.53065 * 109.67390 * 342.18460 * 10 8 7 27 27 C 1.53411 * 108.27727 * 48.28864 * 26 10 8 28 28 O 1.35956 * 118.43623 * 179.77840 * 7 6 5 29 29 H 1.09008 * 109.46489 * 300.00245 * 1 2 3 30 30 H 1.08999 * 109.46854 * 59.99552 * 1 2 3 31 31 H 1.08996 * 109.47331 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46922 * 240.00067 * 2 1 3 33 33 H 1.08999 * 109.46854 * 120.00448 * 2 1 3 34 34 H 1.08006 * 120.04273 * 0.06272 * 5 4 3 35 35 H 1.07996 * 119.85863 * 180.02562 * 6 5 4 36 36 H 1.07998 * 119.86240 * 179.88627 * 9 8 7 37 37 H 1.00900 * 111.00220 * 326.08619 * 12 10 8 38 38 H 1.09005 * 109.46561 * 305.83132 * 13 12 10 39 39 H 1.08996 * 109.46837 * 65.83180 * 13 12 10 40 40 H 1.08996 * 109.47174 * 300.00774 * 16 14 13 41 41 H 1.09008 * 109.46904 * 60.00176 * 16 14 13 42 42 H 1.08995 * 109.47379 * 179.97438 * 16 14 13 43 43 H 1.09001 * 109.46521 * 304.99435 * 17 14 13 44 44 H 1.08992 * 109.47275 * 64.99251 * 17 14 13 45 45 H 0.96998 * 119.99946 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.70214 * 167.98712 * 26 10 8 47 47 H 1.08999 * 109.70259 * 288.58958 * 26 10 8 48 48 H 1.08998 * 109.68060 * 54.96590 * 27 26 10 49 49 H 1.08995 * 109.68033 * 175.48400 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3545 1.5253 0.0005 5 6 4.2009 0.4262 0.0005 6 6 5.5679 0.6108 0.0016 7 6 6.1026 1.8953 0.0022 8 6 5.2581 2.9911 -0.0015 9 6 3.8856 2.8048 -0.0011 10 6 5.7977 4.3991 -0.0066 11 1 5.7238 4.8116 -1.0129 12 7 5.0134 5.2265 0.9197 13 6 5.1300 6.6512 0.5807 14 6 4.4225 7.4889 1.6478 15 1 4.8252 7.2414 2.6300 16 6 2.9227 7.1880 1.6208 17 6 4.6497 8.9749 1.3630 18 6 4.0581 9.7964 2.4794 19 1 3.5687 9.3075 3.3088 20 6 4.1417 11.1721 2.4418 21 7 4.7381 11.7674 1.4321 22 14 3.4078 12.1905 3.8253 23 1 4.0608 11.8262 5.1083 24 1 3.6295 13.6328 3.5495 25 1 1.9503 11.9220 3.9181 26 6 7.2635 4.3908 0.4341 27 6 7.9982 3.3024 -0.3591 28 8 7.4551 2.0335 0.0079 29 1 -0.3632 0.5139 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.7900 -0.5727 -0.0009 35 1 6.2261 -0.2454 0.0012 36 1 3.2268 3.6605 -0.0021 37 1 4.0471 4.9363 0.9343 38 1 6.1831 6.9297 0.5392 39 1 4.6676 6.8328 -0.3895 40 1 2.5201 7.4353 0.6386 41 1 2.7608 6.1292 1.8237 42 1 2.4187 7.7843 2.3813 43 1 5.7195 9.1722 1.2942 44 1 4.1697 9.2419 0.4216 45 1 4.7965 12.7352 1.4055 46 1 7.7142 5.3619 0.2297 47 1 7.3254 4.1735 1.5004 48 1 7.8563 3.4674 -1.4271 49 1 9.0616 3.3297 -0.1216 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602618216.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:05:08 Heat of formation + Delta-G solvation = -86.598622 kcal Electronic energy + Delta-G solvation = -26819.761685 eV Core-core repulsion = 23131.775288 eV Total energy + Delta-G solvation = -3687.986397 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.91972 -40.30610 -38.61079 -37.47613 -36.28386 -34.39069 -32.76774 -32.08022 -31.60564 -30.08093 -28.80566 -27.20270 -25.68061 -25.18091 -24.39029 -23.26028 -22.98943 -20.95140 -20.64668 -19.16334 -18.68095 -18.47574 -17.67187 -17.02164 -16.79721 -16.64070 -16.30333 -15.98647 -15.70644 -15.43912 -15.20002 -14.70968 -14.42452 -14.39512 -14.30097 -14.06435 -13.89867 -13.76863 -13.48731 -13.35635 -13.27269 -13.03493 -12.78512 -12.62895 -12.51434 -12.29860 -12.14663 -12.04516 -11.91892 -11.82801 -11.54857 -11.48654 -11.17062 -11.07841 -10.91595 -10.52768 -10.08561 -9.39224 -8.70515 -8.17361 -6.26281 0.16970 0.41825 1.39959 1.42623 1.50291 2.23442 2.38558 2.42222 2.64652 3.15940 3.16454 3.48017 3.68854 3.81565 3.91754 4.03552 4.09396 4.13323 4.18496 4.23246 4.25226 4.27232 4.39295 4.43809 4.48062 4.56972 4.65094 4.69726 4.73810 4.84160 4.89923 4.93466 4.96561 4.97063 5.00809 5.14217 5.21094 5.23610 5.32341 5.34122 5.38383 5.46075 5.53321 5.55673 5.79028 5.89167 6.01760 6.30923 6.34412 6.37660 6.54634 6.89143 7.41792 8.94487 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013209 B = 0.002800 C = 0.002367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2119.192670 B = 9996.768618 C =11824.591131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.045 3.955 3 O -0.335 6.335 4 C 0.093 3.907 5 C -0.167 4.167 6 C -0.111 4.111 7 C 0.090 3.910 8 C -0.124 4.124 9 C -0.133 4.133 10 C 0.128 3.872 11 H 0.056 0.944 12 N -0.681 5.681 13 C 0.076 3.924 14 C -0.073 4.073 15 H 0.056 0.944 16 C -0.127 4.127 17 C 0.035 3.965 18 C -0.530 4.530 19 H 0.059 0.941 20 C -0.001 4.001 21 N -0.935 5.935 22 Si 0.960 3.040 23 H -0.268 1.268 24 H -0.284 1.284 25 H -0.268 1.268 26 C -0.147 4.147 27 C 0.064 3.936 28 O -0.325 6.325 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.162 0.838 35 H 0.155 0.845 36 H 0.124 0.876 37 H 0.344 0.656 38 H 0.066 0.934 39 H 0.025 0.975 40 H 0.041 0.959 41 H 0.060 0.940 42 H 0.046 0.954 43 H -0.011 1.011 44 H -0.010 1.010 45 H 0.262 0.738 46 H 0.088 0.912 47 H 0.073 0.927 48 H 0.072 0.928 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.663 -28.222 -5.875 28.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 O -0.251 6.251 4 C 0.048 3.952 5 C -0.186 4.186 6 C -0.129 4.129 7 C 0.045 3.955 8 C -0.125 4.125 9 C -0.152 4.152 10 C 0.019 3.981 11 H 0.074 0.926 12 N -0.315 5.315 13 C -0.052 4.052 14 C -0.092 4.092 15 H 0.074 0.926 16 C -0.184 4.184 17 C -0.003 4.003 18 C -0.568 4.568 19 H 0.077 0.923 20 C -0.198 4.198 21 N -0.576 5.576 22 Si 0.784 3.216 23 H -0.194 1.194 24 H -0.209 1.209 25 H -0.193 1.193 26 C -0.185 4.185 27 C -0.011 4.011 28 O -0.240 6.240 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.120 0.880 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.180 0.820 35 H 0.172 0.828 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.060 0.940 41 H 0.079 0.921 42 H 0.065 0.935 43 H 0.007 0.993 44 H 0.009 0.991 45 H 0.071 0.929 46 H 0.107 0.893 47 H 0.092 0.908 48 H 0.090 0.910 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.160 -28.025 -5.420 28.544 hybrid contribution -0.850 1.387 -0.279 1.650 sum -1.010 -26.638 -5.700 27.260 Atomic orbital electron populations 1.21817 0.91922 1.04143 1.02960 1.23071 0.96655 0.80749 1.02480 1.86085 1.18494 1.31406 1.89073 1.18839 0.83054 0.93864 0.99418 1.21297 0.92777 0.99046 1.05455 1.20658 0.94990 0.95103 1.02158 1.18751 0.82746 0.93465 1.00571 1.19660 0.93010 0.94719 1.05146 1.20116 0.93900 0.95776 1.05415 1.20314 0.94411 0.88667 0.94695 0.92615 1.60648 1.16370 1.02392 1.52116 1.21927 1.00249 0.86896 0.96175 1.20995 0.95706 0.94542 0.97959 0.92600 1.21645 0.95691 1.00120 1.00968 1.18985 0.94652 0.91395 0.95259 1.21608 1.36186 0.91840 1.07190 0.92250 1.25927 0.95952 0.99517 0.98441 1.70087 1.45062 1.09797 1.32609 0.85584 0.79206 0.77293 0.79485 1.19350 1.20935 1.19252 1.22241 0.93931 1.00784 1.01537 1.23164 0.99234 0.79801 0.98919 1.85959 1.17470 1.36036 1.84545 0.92248 0.92122 0.87982 0.90697 0.90896 0.82033 0.82759 0.85781 0.83386 0.91591 0.95676 0.93987 0.92140 0.93533 0.99260 0.99131 0.92920 0.89306 0.90802 0.90969 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 71.98 0.74 -0.88 16 2 C 0.04 0.59 5.46 71.98 0.39 0.98 16 3 O -0.34 -7.31 10.14 -93.35 -0.95 -8.26 16 4 C 0.09 2.12 6.68 22.46 0.15 2.27 16 5 C -0.17 -3.03 9.03 22.32 0.20 -2.83 16 6 C -0.11 -2.16 9.93 22.41 0.22 -1.94 16 7 C 0.09 2.15 6.47 22.51 0.15 2.30 16 8 C -0.12 -3.18 5.56 -19.75 -0.11 -3.29 16 9 C -0.13 -3.40 8.90 22.40 0.20 -3.20 16 10 C 0.13 3.37 2.65 44.22 0.12 3.49 16 11 H 0.06 1.46 7.90 -2.39 -0.02 1.44 16 12 N -0.68 -20.66 6.23 -495.17 -3.09 -23.74 16 13 C 0.08 2.67 4.93 86.30 0.43 3.10 16 14 C -0.07 -3.06 2.55 -10.79 -0.03 -3.09 16 15 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 16 C -0.13 -4.84 8.77 71.98 0.63 -4.21 16 17 C 0.03 1.84 4.45 29.85 0.13 1.97 16 18 C -0.53 -30.37 8.41 25.60 0.22 -30.16 16 19 H 0.06 3.29 7.06 -2.91 -0.02 3.27 16 20 C 0.00 -0.06 5.46 84.65 0.46 0.40 16 21 N -0.93 -57.52 13.29 21.45 0.28 -57.24 16 22 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 25 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 26 C -0.15 -3.41 5.52 30.75 0.17 -3.24 16 27 C 0.06 1.18 7.03 72.12 0.51 1.68 16 28 O -0.33 -7.41 10.27 -93.05 -0.96 -8.37 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.72 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.75 7.66 -2.39 -0.02 0.73 16 33 H 0.07 0.78 7.66 -2.39 -0.02 0.76 16 34 H 0.16 1.86 6.31 -2.91 -0.02 1.84 16 35 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.12 3.23 6.57 -2.91 -0.02 3.21 16 37 H 0.34 10.17 4.69 -89.69 -0.42 9.75 16 38 H 0.07 2.33 7.35 -2.38 -0.02 2.31 16 39 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.06 1.95 6.82 -2.38 -0.02 1.93 16 42 H 0.05 1.91 6.95 -2.39 -0.02 1.89 16 43 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 44 H -0.01 -0.56 8.14 -2.39 -0.02 -0.57 16 45 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 46 H 0.09 1.98 7.55 -2.39 -0.02 1.96 16 47 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 48 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -68.55 385.30 2.41 -66.14 By element: Atomic # 1 Polarization: 20.60 SS G_CDS: 0.51 Total: 21.11 kcal Atomic # 6 Polarization: -41.21 SS G_CDS: 4.58 Total: -36.64 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -2.80 Total: -80.98 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: -1.90 Total: -16.63 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -68.55 2.41 -66.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602618216.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.461 kcal (2) G-P(sol) polarization free energy of solvation -68.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds