Wall clock time and date at job start Tue Mar 31 2020 13:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46910 * 110.99621 * 2 1 4 4 C 1.53001 * 109.46717 * 159.64688 * 3 2 1 5 5 F 1.39897 * 109.47447 * 306.19963 * 4 3 2 6 6 F 1.39901 * 109.46968 * 66.20792 * 4 3 2 7 7 C 1.46891 * 111.00317 * 236.04899 * 2 1 3 8 8 C 1.53123 * 109.52221 * 297.06383 * 7 2 1 9 9 C 1.53038 * 109.28040 * 177.61835 * 8 7 2 10 10 N 1.46846 * 109.52556 * 300.82099 * 9 8 7 11 11 C 1.46898 * 110.99779 * 185.83424 * 10 9 8 12 12 C 1.50704 * 109.47031 * 169.99857 * 11 10 9 13 13 O 1.21288 * 119.99613 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00201 * 179.72294 * 12 11 10 15 15 C 1.46496 * 120.00067 * 180.27590 * 14 12 11 16 16 C 1.50697 * 109.47393 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99625 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00530 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99672 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00208 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47120 * 60.00573 * 20 18 16 22 22 H 1.48507 * 109.46890 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47281 * 300.00071 * 20 18 16 24 24 C 1.46852 * 111.19342 * 61.74278 * 10 9 8 25 25 C 1.53035 * 109.52195 * 298.25259 * 24 10 9 26 26 H 1.09001 * 109.47020 * 186.93388 * 1 2 3 27 27 H 1.09004 * 109.47103 * 306.92842 * 1 2 3 28 28 H 1.08998 * 109.47551 * 66.93369 * 1 2 3 29 29 H 1.08992 * 109.46976 * 279.64702 * 3 2 1 30 30 H 1.08996 * 109.46857 * 39.64943 * 3 2 1 31 31 H 1.09002 * 109.46914 * 186.19791 * 4 3 2 32 32 H 1.08998 * 109.52490 * 176.93488 * 7 2 1 33 33 H 1.08995 * 109.50272 * 57.68014 * 8 7 2 34 34 H 1.08998 * 109.53575 * 297.58391 * 8 7 2 35 35 H 1.08999 * 109.46344 * 180.80119 * 9 8 7 36 36 H 1.09001 * 109.45143 * 60.83199 * 9 8 7 37 37 H 1.09001 * 109.47306 * 50.00351 * 11 10 9 38 38 H 1.08996 * 109.47691 * 290.00063 * 11 10 9 39 39 H 0.97003 * 119.99898 * 0.28518 * 14 12 11 40 40 H 1.08999 * 109.47281 * 300.00494 * 15 14 12 41 41 H 1.09005 * 109.47198 * 60.00278 * 15 14 12 42 42 H 0.97003 * 120.00096 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.46839 * 58.27650 * 24 10 9 44 44 H 1.09008 * 109.45841 * 178.24385 * 24 10 9 45 45 H 1.08997 * 109.50801 * 299.24305 * 25 24 10 46 46 H 1.09006 * 109.50029 * 179.12684 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3716 0.0000 4 6 3.4407 1.3630 0.5017 5 9 3.4998 0.7201 1.7428 6 9 4.2486 0.6820 -0.4153 7 6 1.9954 -0.7659 -1.1375 8 6 1.5658 -2.2302 -1.0113 9 6 2.0666 -3.0105 -2.2288 10 7 1.5082 -2.4217 -3.4527 11 6 1.8556 -3.2278 -4.6306 12 6 1.0716 -2.7405 -5.8218 13 8 0.2998 -1.8127 -5.7014 14 7 1.2326 -3.3318 -7.0222 15 6 0.4750 -2.8541 -8.1815 16 6 0.8349 -3.6779 -9.3910 17 1 1.5556 -4.4775 -9.3046 18 6 0.2442 -3.4107 -10.6078 19 7 -0.6339 -2.4372 -10.7128 20 14 0.6899 -4.4323 -12.1068 21 1 0.3571 -5.8569 -11.8517 22 1 -0.0781 -3.9480 -13.2820 23 1 2.1442 -4.3045 -12.3783 24 6 1.9458 -1.0299 -3.6198 25 6 1.4413 -0.1905 -2.4439 26 1 -0.3633 -1.0202 0.1241 27 1 -0.3633 0.6175 0.8215 28 1 -0.3634 0.4026 -0.9455 29 1 1.9647 1.7724 -1.0131 30 1 1.3868 1.9942 0.6557 31 1 3.7950 2.3885 0.6065 32 1 3.0837 -0.7049 -1.1453 33 1 0.4784 -2.2876 -0.9644 34 1 1.9923 -2.6582 -0.1041 35 1 1.7501 -4.0505 -2.1489 36 1 3.1549 -2.9640 -2.2672 37 1 1.6138 -4.2734 -4.4395 38 1 2.9222 -3.1330 -4.8341 39 1 1.8501 -4.0737 -7.1185 40 1 -0.5924 -2.9491 -7.9822 41 1 0.7180 -1.8081 -8.3685 42 1 -1.0498 -2.2495 -11.5688 43 1 3.0347 -0.9928 -3.6519 44 1 1.5415 -0.6314 -4.5504 45 1 0.3519 -0.2158 -2.4195 46 1 1.7794 0.8392 -2.5603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000749846851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:11 Heat of formation + Delta-G solvation = -126.272210 kcal Electronic energy + Delta-G solvation = -27731.143838 eV Core-core repulsion = 23519.500286 eV Total energy + Delta-G solvation = -4211.643551 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.181 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.14252 -47.13385 -39.95954 -38.66078 -36.63979 -34.13553 -32.49101 -32.22242 -30.87088 -29.91226 -28.13863 -26.55141 -25.34363 -23.63489 -23.11097 -22.28256 -21.28192 -19.62747 -19.45624 -17.82890 -17.60382 -17.08311 -16.69705 -16.21353 -15.67624 -15.56597 -15.22061 -15.03484 -14.71037 -14.40234 -14.20430 -14.16039 -13.87239 -13.80695 -13.48323 -13.25715 -13.14439 -12.77139 -12.57763 -12.45426 -12.31542 -12.02513 -11.93147 -11.74542 -11.43194 -11.38821 -11.03133 -10.97596 -10.94369 -10.84973 -10.61237 -10.32491 -10.29363 -9.41098 -9.00521 -8.72898 -8.52881 -8.17053 -7.84070 -6.16818 -4.23770 3.24828 3.29599 3.31022 3.37831 3.40544 3.61645 3.71812 3.97324 4.19328 4.26400 4.43219 4.57014 4.68208 4.78207 5.00911 5.02059 5.08795 5.18795 5.19303 5.22439 5.23334 5.37757 5.41760 5.45399 5.54616 5.59179 5.61566 5.69266 5.77459 5.84944 5.92526 6.06122 6.20868 6.29089 6.66221 6.72872 7.04805 7.19197 7.33354 7.46437 7.52471 7.68006 7.97419 8.64830 8.79385 9.14109 9.43089 10.93355 Molecular weight = 319.18amu Principal moments of inertia in cm(-1) A = 0.030609 B = 0.002233 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.548528 B =12533.616833 C =12566.964645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.529 5.529 3 C -0.006 4.006 4 C 0.269 3.731 5 F -0.197 7.197 6 F -0.204 7.204 7 C 0.065 3.935 8 C -0.104 4.104 9 C 0.057 3.943 10 N -0.519 5.519 11 C 0.036 3.964 12 C 0.499 3.501 13 O -0.540 6.540 14 N -0.715 5.715 15 C 0.252 3.748 16 C -0.544 4.544 17 H 0.062 0.938 18 C 0.063 3.937 19 N -0.886 5.886 20 Si 0.904 3.096 21 H -0.275 1.275 22 H -0.285 1.285 23 H -0.275 1.275 24 C 0.057 3.943 25 C -0.144 4.144 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.102 0.898 31 H 0.110 0.890 32 H 0.097 0.903 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.098 0.902 38 H 0.057 0.943 39 H 0.389 0.611 40 H 0.026 0.974 41 H 0.025 0.975 42 H 0.266 0.734 43 H 0.025 0.975 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.841 5.604 23.817 25.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 N -0.252 5.252 3 C -0.135 4.135 4 C 0.215 3.785 5 F -0.178 7.178 6 F -0.186 7.186 7 C -0.043 4.043 8 C -0.142 4.142 9 C -0.072 4.072 10 N -0.243 5.243 11 C -0.096 4.096 12 C 0.283 3.717 13 O -0.418 6.418 14 N -0.365 5.365 15 C 0.131 3.869 16 C -0.582 4.582 17 H 0.080 0.920 18 C -0.140 4.140 19 N -0.523 5.523 20 Si 0.731 3.269 21 H -0.201 1.201 22 H -0.211 1.211 23 H -0.201 1.201 24 C -0.071 4.071 25 C -0.183 4.183 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.057 0.943 29 H 0.091 0.909 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.050 0.950 37 H 0.117 0.883 38 H 0.075 0.925 39 H 0.222 0.778 40 H 0.044 0.956 41 H 0.043 0.957 42 H 0.076 0.924 43 H 0.043 0.957 44 H 0.118 0.882 45 H 0.097 0.903 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 6.800 6.124 24.245 25.914 hybrid contribution 1.137 -0.579 -1.787 2.196 sum 7.937 5.545 22.458 24.456 Atomic orbital electron populations 1.22511 0.86604 1.03185 1.00774 1.62250 1.08763 1.11033 1.43113 1.23304 0.94410 0.92964 1.02836 1.21976 0.90690 0.92047 0.73772 1.92991 1.97068 1.84619 1.43169 1.92912 1.75637 1.82806 1.67208 1.22222 1.00868 0.93774 0.87468 1.21582 1.02096 0.93465 0.97023 1.22099 0.96765 0.98650 0.89664 1.61563 1.59837 1.01999 1.00944 1.21993 0.98129 0.98865 0.90579 1.20314 0.83531 0.83769 0.84113 1.90619 1.37571 1.28929 1.84644 1.46459 1.44759 1.35664 1.09577 1.19063 0.91606 0.95354 0.80848 1.21197 1.25855 1.17586 0.93555 0.91976 1.24955 0.94721 0.95308 0.99051 1.69968 1.27178 1.29412 1.25777 0.86474 0.78537 0.80288 0.81599 1.20051 1.21072 1.20082 1.22152 0.96638 0.88090 1.00251 1.22186 1.02493 0.98551 0.95086 0.90480 0.91633 0.94271 0.90927 0.88019 0.87283 0.88503 0.90833 0.90896 0.90432 0.94958 0.88341 0.92520 0.77832 0.95581 0.95691 0.92401 0.95678 0.88245 0.90320 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 8.81 60.06 0.53 0.67 16 2 N -0.53 -4.96 4.48 -234.74 -1.05 -6.01 16 3 C -0.01 -0.04 5.26 -3.82 -0.02 -0.06 16 4 C 0.27 2.00 5.58 37.16 0.21 2.21 16 5 F -0.20 -1.96 17.15 2.25 0.04 -1.92 16 6 F -0.20 -2.04 14.67 2.25 0.03 -2.01 16 7 C 0.06 0.69 2.15 -67.59 -0.15 0.54 16 8 C -0.10 -1.10 5.28 -26.65 -0.14 -1.24 16 9 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 10 N -0.52 -7.41 4.40 -236.11 -1.04 -8.45 16 11 C 0.04 0.52 5.45 -4.97 -0.03 0.49 16 12 C 0.50 9.88 7.50 -10.98 -0.08 9.80 16 13 O -0.54 -12.80 14.33 5.55 0.08 -12.72 16 14 N -0.72 -14.98 5.55 -61.47 -0.34 -15.32 16 15 C 0.25 6.68 5.43 -5.20 -0.03 6.65 16 16 C -0.54 -14.75 9.28 -34.44 -0.32 -15.07 16 17 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -26.15 13.29 55.43 0.74 -25.42 16 20 Si 0.90 20.85 29.54 -169.99 -5.02 15.82 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.06 0.82 5.11 -3.83 -0.02 0.80 16 25 C -0.14 -1.73 4.73 -26.65 -0.13 -1.86 16 26 H 0.08 0.68 6.48 -51.93 -0.34 0.34 16 27 H 0.06 0.46 7.90 -51.93 -0.41 0.05 16 28 H 0.04 0.36 6.04 -51.93 -0.31 0.05 16 29 H 0.07 0.51 6.04 -51.93 -0.31 0.20 16 30 H 0.10 0.54 7.77 -51.93 -0.40 0.14 16 31 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 1.12 5.42 -51.93 -0.28 0.84 16 33 H 0.07 0.82 6.43 -51.93 -0.33 0.49 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.79 8.02 -51.93 -0.42 0.37 16 36 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 1.22 7.99 -51.93 -0.41 0.81 16 38 H 0.06 0.73 8.12 -51.93 -0.42 0.31 16 39 H 0.39 6.95 8.32 -40.82 -0.34 6.61 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.10 1.76 5.78 -51.92 -0.30 1.46 16 45 H 0.08 1.04 6.17 -51.93 -0.32 0.72 16 46 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -32.96 361.87 -8.41 -41.38 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.01 Total: 3.98 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -0.29 Total: 5.22 kcal Atomic # 7 Polarization: -53.51 SS G_CDS: -1.69 Total: -55.20 kcal Atomic # 8 Polarization: -12.80 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 9 Polarization: -4.00 SS G_CDS: 0.07 Total: -3.93 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.96 -8.41 -41.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749846851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.896 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds