Wall clock time and date at job start Tue Mar 31 2020 13:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46910 * 110.99621 * 2 1 4 4 C 1.53001 * 109.46717 * 159.64688 * 3 2 1 5 5 F 1.39897 * 109.47447 * 306.19963 * 4 3 2 6 6 F 1.39901 * 109.46968 * 66.20792 * 4 3 2 7 7 C 1.46891 * 111.00317 * 236.04899 * 2 1 3 8 8 C 1.53123 * 109.52221 * 297.06383 * 7 2 1 9 9 C 1.53038 * 109.28040 * 177.61835 * 8 7 2 10 10 N 1.46846 * 109.52556 * 300.82099 * 9 8 7 11 11 C 1.46898 * 110.99779 * 185.83424 * 10 9 8 12 12 C 1.50704 * 109.47031 * 169.99857 * 11 10 9 13 13 O 1.21288 * 119.99613 * 0.02562 * 12 11 10 14 14 N 1.34775 * 120.00201 * 179.72294 * 12 11 10 15 15 C 1.46496 * 120.00067 * 180.27590 * 14 12 11 16 16 C 1.50697 * 109.47393 * 180.02562 * 15 14 12 17 17 H 1.08001 * 119.99625 * 0.02562 * 16 15 14 18 18 C 1.37875 * 120.00530 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99672 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00208 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47120 * 60.00573 * 20 18 16 22 22 H 1.48507 * 109.46890 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47281 * 300.00071 * 20 18 16 24 24 C 1.46852 * 111.19342 * 61.74278 * 10 9 8 25 25 C 1.53035 * 109.52195 * 298.25259 * 24 10 9 26 26 H 1.09001 * 109.47020 * 186.93388 * 1 2 3 27 27 H 1.09004 * 109.47103 * 306.92842 * 1 2 3 28 28 H 1.08998 * 109.47551 * 66.93369 * 1 2 3 29 29 H 1.08992 * 109.46976 * 279.64702 * 3 2 1 30 30 H 1.08996 * 109.46857 * 39.64943 * 3 2 1 31 31 H 1.09002 * 109.46914 * 186.19791 * 4 3 2 32 32 H 1.08998 * 109.52490 * 176.93488 * 7 2 1 33 33 H 1.08995 * 109.50272 * 57.68014 * 8 7 2 34 34 H 1.08998 * 109.53575 * 297.58391 * 8 7 2 35 35 H 1.08999 * 109.46344 * 180.80119 * 9 8 7 36 36 H 1.09001 * 109.45143 * 60.83199 * 9 8 7 37 37 H 1.09001 * 109.47306 * 50.00351 * 11 10 9 38 38 H 1.08996 * 109.47691 * 290.00063 * 11 10 9 39 39 H 0.97003 * 119.99898 * 0.28518 * 14 12 11 40 40 H 1.08999 * 109.47281 * 300.00494 * 15 14 12 41 41 H 1.09005 * 109.47198 * 60.00278 * 15 14 12 42 42 H 0.97003 * 120.00096 * 180.02562 * 19 18 16 43 43 H 1.08995 * 109.46839 * 58.27650 * 24 10 9 44 44 H 1.09008 * 109.45841 * 178.24385 * 24 10 9 45 45 H 1.08997 * 109.50801 * 299.24305 * 25 24 10 46 46 H 1.09006 * 109.50029 * 179.12684 * 25 24 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9953 1.3716 0.0000 4 6 3.4407 1.3630 0.5017 5 9 3.4998 0.7201 1.7428 6 9 4.2486 0.6820 -0.4153 7 6 1.9954 -0.7659 -1.1375 8 6 1.5658 -2.2302 -1.0113 9 6 2.0666 -3.0105 -2.2288 10 7 1.5082 -2.4217 -3.4527 11 6 1.8556 -3.2278 -4.6306 12 6 1.0716 -2.7405 -5.8218 13 8 0.2998 -1.8127 -5.7014 14 7 1.2326 -3.3318 -7.0222 15 6 0.4750 -2.8541 -8.1815 16 6 0.8349 -3.6779 -9.3910 17 1 1.5556 -4.4775 -9.3046 18 6 0.2442 -3.4107 -10.6078 19 7 -0.6339 -2.4372 -10.7128 20 14 0.6899 -4.4323 -12.1068 21 1 0.3571 -5.8569 -11.8517 22 1 -0.0781 -3.9480 -13.2820 23 1 2.1442 -4.3045 -12.3783 24 6 1.9458 -1.0299 -3.6198 25 6 1.4413 -0.1905 -2.4439 26 1 -0.3633 -1.0202 0.1241 27 1 -0.3633 0.6175 0.8215 28 1 -0.3634 0.4026 -0.9455 29 1 1.9647 1.7724 -1.0131 30 1 1.3868 1.9942 0.6557 31 1 3.7950 2.3885 0.6065 32 1 3.0837 -0.7049 -1.1453 33 1 0.4784 -2.2876 -0.9644 34 1 1.9923 -2.6582 -0.1041 35 1 1.7501 -4.0505 -2.1489 36 1 3.1549 -2.9640 -2.2672 37 1 1.6138 -4.2734 -4.4395 38 1 2.9222 -3.1330 -4.8341 39 1 1.8501 -4.0737 -7.1185 40 1 -0.5924 -2.9491 -7.9822 41 1 0.7180 -1.8081 -8.3685 42 1 -1.0498 -2.2495 -11.5688 43 1 3.0347 -0.9928 -3.6519 44 1 1.5415 -0.6314 -4.5504 45 1 0.3519 -0.2158 -2.4195 46 1 1.7794 0.8392 -2.5603 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000749846851.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:52:10 Heat of formation + Delta-G solvation = -151.698357 kcal Electronic energy + Delta-G solvation = -27732.246398 eV Core-core repulsion = 23519.500286 eV Total energy + Delta-G solvation = -4212.746112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.181 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.78837 -47.79955 -41.09028 -40.02255 -37.66548 -36.07041 -34.35229 -33.32818 -31.85216 -30.64705 -29.77901 -27.91833 -26.31202 -24.68265 -24.39004 -23.68008 -22.16073 -21.33210 -20.34472 -18.91605 -18.42707 -18.25577 -17.55356 -17.46011 -17.21342 -16.76420 -16.59939 -16.17357 -15.95194 -15.66186 -15.40416 -15.22149 -14.84723 -14.75794 -14.43039 -14.22053 -14.16136 -14.06220 -13.98027 -13.72525 -13.42318 -13.16756 -13.03815 -12.90095 -12.70667 -12.67950 -12.54074 -12.26883 -12.22180 -11.94608 -11.76402 -11.56142 -11.50888 -11.11899 -10.79150 -10.62465 -9.80288 -9.29998 -9.24946 -8.29519 -6.46271 1.42496 1.46682 1.54812 1.80952 2.27332 2.46530 2.73943 3.03642 3.05177 3.09149 3.47446 3.64850 3.78004 3.85526 3.93257 4.03235 4.16112 4.21753 4.29337 4.35712 4.40361 4.47400 4.49842 4.53670 4.64466 4.66347 4.72732 4.76238 4.94927 4.98143 5.05715 5.09322 5.11501 5.20586 5.24381 5.37201 5.49319 5.70768 5.84791 5.90567 5.98141 6.03588 6.17389 6.65025 6.96285 7.23475 7.54478 8.82503 Molecular weight = 319.18amu Principal moments of inertia in cm(-1) A = 0.030609 B = 0.002233 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.548528 B =12533.616833 C =12566.964645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.536 5.536 3 C -0.009 4.009 4 C 0.262 3.738 5 F -0.213 7.213 6 F -0.221 7.221 7 C 0.074 3.926 8 C -0.101 4.101 9 C 0.059 3.941 10 N -0.538 5.538 11 C 0.049 3.951 12 C 0.494 3.506 13 O -0.584 6.584 14 N -0.711 5.711 15 C 0.270 3.730 16 C -0.556 4.556 17 H 0.084 0.916 18 C 0.003 3.997 19 N -0.932 5.932 20 Si 0.985 3.015 21 H -0.262 1.262 22 H -0.286 1.286 23 H -0.262 1.262 24 C 0.060 3.940 25 C -0.135 4.135 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.124 0.876 31 H 0.151 0.849 32 H 0.092 0.908 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.094 0.906 36 H 0.043 0.957 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.408 0.592 40 H -0.015 1.015 41 H -0.015 1.015 42 H 0.269 0.731 43 H 0.033 0.967 44 H 0.058 0.942 45 H 0.061 0.939 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.637 4.265 24.901 27.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.258 5.258 3 C -0.138 4.138 4 C 0.208 3.792 5 F -0.194 7.194 6 F -0.202 7.202 7 C -0.035 4.035 8 C -0.139 4.139 9 C -0.069 4.069 10 N -0.263 5.263 11 C -0.082 4.082 12 C 0.281 3.719 13 O -0.465 6.465 14 N -0.361 5.361 15 C 0.147 3.853 16 C -0.594 4.594 17 H 0.102 0.898 18 C -0.197 4.197 19 N -0.570 5.570 20 Si 0.808 3.192 21 H -0.186 1.186 22 H -0.211 1.211 23 H -0.186 1.186 24 C -0.069 4.069 25 C -0.175 4.175 26 H 0.090 0.910 27 H 0.101 0.899 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.142 0.858 31 H 0.168 0.832 32 H 0.110 0.890 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.147 0.853 38 H 0.101 0.899 39 H 0.243 0.757 40 H 0.003 0.997 41 H 0.003 0.997 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.076 0.924 45 H 0.080 0.920 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.633 4.756 25.375 27.222 hybrid contribution 0.538 -0.081 -2.049 2.120 sum 9.172 4.675 23.326 25.497 Atomic orbital electron populations 1.22506 0.86273 1.03191 1.00878 1.62275 1.09097 1.12380 1.42086 1.23449 0.94792 0.92065 1.03504 1.22475 0.90599 0.93439 0.72664 1.92957 1.97125 1.85154 1.44174 1.92876 1.76129 1.83393 1.67833 1.22081 1.00371 0.94052 0.86979 1.21565 1.01632 0.93453 0.97224 1.22179 0.97296 0.99311 0.88094 1.61525 1.60954 1.01947 1.01904 1.21934 0.98226 0.99956 0.88063 1.21368 0.82979 0.82614 0.84953 1.90608 1.39610 1.30865 1.85380 1.46195 1.44762 1.36441 1.08749 1.18474 0.89973 0.93600 0.83269 1.21603 1.26179 1.17952 0.93686 0.89787 1.26084 0.94300 0.96445 1.02861 1.70138 1.28611 1.31486 1.26808 0.85206 0.78710 0.78630 0.76663 1.18613 1.21133 1.18621 1.22015 0.96825 0.88748 0.99279 1.22101 1.01356 0.98732 0.95262 0.91012 0.89873 0.95362 0.90838 0.85778 0.83170 0.88996 0.91635 0.89768 0.88799 0.93876 0.85300 0.89945 0.75661 0.99726 0.99712 0.92266 0.94838 0.92352 0.92002 0.91358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 8.81 127.69 1.12 1.43 16 2 N -0.54 -9.31 4.48 -896.59 -4.02 -13.33 16 3 C -0.01 -0.12 5.26 86.30 0.45 0.34 16 4 C 0.26 3.35 5.58 71.98 0.40 3.75 16 5 F -0.21 -3.86 17.15 44.97 0.77 -3.08 16 6 F -0.22 -4.09 14.67 44.97 0.66 -3.43 16 7 C 0.07 1.49 2.15 45.00 0.10 1.58 16 8 C -0.10 -1.97 5.28 30.65 0.16 -1.81 16 9 C 0.06 1.19 5.46 86.33 0.47 1.66 16 10 N -0.54 -14.87 4.40 -900.92 -3.96 -18.83 16 11 C 0.05 1.34 5.45 85.56 0.47 1.80 16 12 C 0.49 19.88 7.50 87.66 0.66 20.54 16 13 O -0.58 -29.16 14.33 -3.05 -0.04 -29.20 16 14 N -0.71 -30.12 5.55 -466.79 -2.59 -32.71 16 15 C 0.27 14.96 5.43 85.63 0.46 15.43 16 16 C -0.56 -30.41 9.28 25.60 0.24 -30.17 16 17 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 18 C 0.00 0.15 5.46 84.65 0.46 0.61 16 19 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 20 Si 0.99 42.39 29.54 68.60 2.03 44.42 16 21 H -0.26 -10.64 7.11 99.48 0.71 -9.94 16 22 H -0.29 -12.23 7.11 99.48 0.71 -11.52 16 23 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 24 C 0.06 1.74 5.11 86.32 0.44 2.18 16 25 C -0.14 -3.27 4.73 30.65 0.14 -3.12 16 26 H 0.07 1.22 6.48 -2.39 -0.02 1.21 16 27 H 0.08 1.03 7.90 -2.38 -0.02 1.01 16 28 H 0.03 0.52 6.04 -2.39 -0.01 0.50 16 29 H 0.07 0.94 6.04 -2.39 -0.01 0.92 16 30 H 0.12 1.00 7.77 -2.39 -0.02 0.98 16 31 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.09 2.00 5.42 -2.39 -0.01 1.99 16 33 H 0.06 1.40 6.43 -2.39 -0.02 1.39 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.47 16 35 H 0.09 1.61 8.02 -2.39 -0.02 1.59 16 36 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.13 2.78 7.99 -2.39 -0.02 2.76 16 38 H 0.08 1.88 8.12 -2.39 -0.02 1.87 16 39 H 0.41 14.09 8.32 -92.71 -0.77 13.32 16 40 H -0.02 -0.96 8.14 -2.39 -0.02 -0.97 16 41 H -0.02 -0.94 8.14 -2.38 -0.02 -0.96 16 42 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 43 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 44 H 0.06 2.18 5.78 -2.38 -0.01 2.17 16 45 H 0.06 1.70 6.17 -2.39 -0.01 1.69 16 46 H 0.07 1.51 6.43 -2.38 -0.02 1.50 16 Total: -1.00 -75.34 361.87 -1.06 -76.40 By element: Atomic # 1 Polarization: 21.71 SS G_CDS: 0.23 Total: 21.94 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 5.58 Total: 14.20 kcal Atomic # 7 Polarization: -110.96 SS G_CDS: -10.28 Total: -121.25 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -0.04 Total: -29.20 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 1.43 Total: -6.52 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Total: -75.34 -1.06 -76.40 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000749846851.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.297 kcal (2) G-P(sol) polarization free energy of solvation -75.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds