Wall clock time and date at job start Tue Mar 31 2020 12:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47003 * 2 1 4 4 C 1.46903 * 111.00013 * 297.01827 * 3 2 1 5 5 C 1.53002 * 109.46872 * 287.91548 * 4 3 2 6 6 C 1.46903 * 111.00168 * 60.96538 * 3 2 1 7 7 C 1.53003 * 109.46819 * 66.04786 * 6 3 2 8 8 O 1.45204 * 109.47096 * 65.00158 * 7 6 3 9 9 C 1.34221 * 116.99978 * 180.02562 * 8 7 6 10 10 O 1.20828 * 120.00348 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00144 * 180.27246 * 9 8 7 12 12 C 1.53001 * 109.47544 * 179.72046 * 11 9 8 13 13 H 1.08994 * 109.47093 * 305.00851 * 12 11 9 14 14 C 1.50702 * 109.46494 * 65.00149 * 12 11 9 15 15 H 1.07993 * 120.00119 * 235.77658 * 14 12 11 16 16 C 1.37880 * 119.99827 * 55.78300 * 14 12 11 17 17 N 1.31517 * 120.00298 * 2.95843 * 16 14 12 18 18 Si 1.86799 * 119.99883 * 182.96017 * 16 14 12 19 19 H 1.48501 * 109.47205 * 89.99534 * 18 16 14 20 20 H 1.48504 * 109.47518 * 209.99982 * 18 16 14 21 21 H 1.48505 * 109.47191 * 329.99794 * 18 16 14 22 22 C 1.50696 * 109.47093 * 185.00108 * 12 11 9 23 23 C 1.38237 * 119.99581 * 150.00398 * 22 12 11 24 24 C 1.38241 * 119.99836 * 179.78608 * 23 22 12 25 25 C 1.38235 * 119.99837 * 0.44394 * 24 23 22 26 26 C 1.38238 * 119.99889 * 359.81062 * 25 24 23 27 27 C 1.38229 * 120.00271 * 359.97438 * 26 25 24 28 28 H 1.09010 * 109.46801 * 180.70214 * 1 2 3 29 29 H 1.08995 * 109.47372 * 300.69489 * 1 2 3 30 30 H 1.08993 * 109.47290 * 60.70093 * 1 2 3 31 31 H 1.08996 * 109.47085 * 240.00217 * 2 1 3 32 32 H 1.08995 * 109.47663 * 119.99944 * 2 1 3 33 33 H 1.09000 * 109.47033 * 47.90702 * 4 3 2 34 34 H 1.09002 * 109.47411 * 167.91306 * 4 3 2 35 35 H 1.08999 * 109.47425 * 59.86114 * 5 4 3 36 36 H 1.08996 * 109.47227 * 179.86842 * 5 4 3 37 37 H 1.09000 * 109.46960 * 299.86207 * 5 4 3 38 38 H 1.09003 * 109.47144 * 306.05285 * 6 3 2 39 39 H 1.08998 * 109.47397 * 186.04605 * 6 3 2 40 40 H 1.09008 * 109.47241 * 305.00531 * 7 6 3 41 41 H 1.08996 * 109.47402 * 185.00167 * 7 6 3 42 42 H 1.08997 * 109.47341 * 299.72892 * 11 9 8 43 43 H 1.09005 * 109.47014 * 59.72314 * 11 9 8 44 44 H 0.97000 * 120.00086 * 180.02562 * 17 16 14 45 45 H 1.07996 * 120.00379 * 359.97438 * 23 22 12 46 46 H 1.07990 * 120.00190 * 180.27485 * 24 23 22 47 47 H 1.08002 * 120.00006 * 179.83234 * 25 24 23 48 48 H 1.08003 * 119.99801 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00036 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6077 2.0890 -1.2218 5 6 2.4114 1.5593 -2.4111 6 6 1.5676 2.1032 1.1991 7 6 2.2191 1.4869 2.4387 8 8 3.6552 1.6950 2.3848 9 6 4.3799 1.2102 3.4053 10 8 3.8326 0.6308 4.3133 11 6 5.8756 1.3936 3.4213 12 6 6.4538 0.7588 4.6877 13 1 5.9554 1.1754 5.5629 14 6 6.2352 -0.7317 4.6471 15 1 5.7141 -1.2232 5.4552 16 6 6.7007 -1.4679 3.5783 17 7 7.3860 -0.8788 2.6227 18 14 6.3580 -3.3019 3.4874 19 1 5.0787 -3.5314 2.7692 20 1 7.4626 -3.9765 2.7591 21 1 6.2604 -3.8559 4.8617 22 6 7.9307 1.0481 4.7652 23 6 8.5499 1.1568 5.9964 24 6 9.9056 1.4178 6.0675 25 6 10.6402 1.5792 4.9077 26 6 10.0199 1.4757 3.6766 27 6 8.6651 1.2103 3.6054 28 1 -0.3633 -1.0277 0.0126 29 1 -0.3634 0.5246 0.8836 30 1 -0.3633 0.5029 -0.8961 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.5452 1.9206 -1.3975 34 1 1.7920 3.1570 -1.1054 35 1 2.2290 0.4909 -2.5260 36 1 2.1042 2.0800 -3.3180 37 1 3.4738 1.7298 -2.2365 38 1 0.4835 2.0257 1.2819 39 1 1.8521 3.1527 1.1229 40 1 2.0078 0.4178 2.4667 41 1 1.8168 1.9604 3.3341 42 1 6.3098 0.9144 2.5438 43 1 6.1114 2.4577 3.4081 44 1 7.7132 -1.3967 1.8705 45 1 7.9752 1.0348 6.9026 46 1 10.3902 1.4983 7.0292 47 1 11.6988 1.7858 4.9633 48 1 10.5937 1.6022 2.7705 49 1 8.1805 1.1299 2.6436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795989496.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:04 Heat of formation + Delta-G solvation = -56.098095 kcal Electronic energy + Delta-G solvation = -27596.842095 eV Core-core repulsion = 23910.178301 eV Total energy + Delta-G solvation = -3686.663795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.62244 -38.50490 -38.07294 -35.64422 -34.17695 -31.81025 -31.12225 -30.82224 -29.80636 -28.64953 -27.52217 -25.93825 -24.33869 -22.96557 -22.10794 -21.43199 -20.41777 -19.64412 -19.17499 -16.90493 -16.58558 -16.36782 -15.98413 -15.61796 -15.24629 -15.01676 -14.67563 -14.22409 -13.89582 -13.75043 -13.54265 -13.33478 -13.08396 -12.66047 -12.45118 -12.36628 -12.18686 -12.10380 -11.87795 -11.58242 -11.52728 -11.45619 -11.38780 -11.20243 -10.95460 -10.89027 -10.78237 -10.49830 -10.41275 -10.18533 -9.96974 -9.85761 -9.37497 -9.28378 -9.05453 -8.48245 -8.22182 -7.78361 -7.43470 -5.98023 -4.10188 2.51032 2.60095 3.30916 3.37109 3.40103 3.41790 3.56677 3.87640 4.42353 4.82871 4.91074 4.99083 5.06250 5.12783 5.21486 5.23864 5.30406 5.35824 5.44456 5.46208 5.57411 5.61406 5.82701 5.83164 5.90259 5.92205 5.93845 5.97419 6.02585 6.09747 6.16200 6.29647 6.37342 6.47744 6.56053 6.73577 6.79129 7.02627 7.09346 7.11395 7.15209 7.28811 7.36607 7.50977 7.55189 7.73204 7.93655 8.10427 8.19239 8.31637 8.85504 8.95725 9.54055 10.95332 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.003641 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.368290 B = 7688.819872 C = 8230.787719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.042 3.958 3 N -0.526 5.526 4 C 0.047 3.953 5 C -0.147 4.147 6 C 0.053 3.947 7 C 0.070 3.930 8 O -0.353 6.353 9 C 0.467 3.533 10 O -0.505 6.505 11 C -0.111 4.111 12 C 0.085 3.915 13 H 0.038 0.962 14 C -0.478 4.478 15 H 0.060 0.940 16 C 0.061 3.939 17 N -0.886 5.886 18 Si 0.893 3.107 19 H -0.282 1.282 20 H -0.287 1.287 21 H -0.275 1.275 22 C -0.029 4.029 23 C -0.131 4.131 24 C -0.143 4.143 25 C -0.153 4.153 26 C -0.143 4.143 27 C -0.068 4.068 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.035 0.965 34 H 0.071 0.929 35 H 0.052 0.948 36 H 0.054 0.946 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.142 0.858 43 H 0.064 0.936 44 H 0.263 0.737 45 H 0.105 0.895 46 H 0.101 0.899 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.345 6.844 -6.766 12.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.086 4.086 3 N -0.249 5.249 4 C -0.081 4.081 5 C -0.205 4.205 6 C -0.074 4.074 7 C -0.005 4.005 8 O -0.271 6.271 9 C 0.311 3.689 10 O -0.392 6.392 11 C -0.149 4.149 12 C 0.066 3.934 13 H 0.057 0.943 14 C -0.516 4.516 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.525 5.525 18 Si 0.721 3.279 19 H -0.208 1.208 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.030 4.030 23 C -0.149 4.149 24 C -0.161 4.161 25 C -0.171 4.171 26 C -0.162 4.162 27 C -0.086 4.086 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.159 0.841 43 H 0.082 0.918 44 H 0.073 0.927 45 H 0.123 0.877 46 H 0.119 0.881 47 H 0.117 0.883 48 H 0.120 0.880 49 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.938 6.589 -6.654 12.276 hybrid contribution -1.065 -1.371 -0.023 1.736 sum -9.002 5.218 -6.677 12.363 Atomic orbital electron populations 1.22445 0.98654 1.02422 1.01765 1.22259 0.92361 0.90511 1.03493 1.62185 1.59423 1.01968 1.01355 1.22127 0.97219 0.98404 0.90341 1.21761 1.01513 1.00898 0.96304 1.22229 0.96779 0.98943 0.89496 1.22828 0.79820 1.00987 0.96867 1.86623 1.19319 1.73449 1.47737 1.24268 0.91493 0.74632 0.78519 1.90562 1.72958 1.38655 1.37002 1.21758 0.85372 1.00307 1.07415 1.17696 0.87546 0.96065 0.92074 0.94330 1.20996 1.33880 0.91108 1.05585 0.92144 1.24913 0.94643 0.98500 0.95908 1.69628 1.36443 1.35438 1.10992 0.86556 0.77702 0.85453 0.78165 1.20821 1.21275 1.19999 1.20237 0.98073 0.92608 0.92043 1.20885 0.94298 1.02222 0.97517 1.20787 0.94509 1.03686 0.97106 1.20781 0.98355 1.04700 0.93259 1.21064 0.95921 1.02821 0.96350 1.21477 0.92777 0.94320 1.00070 0.92019 0.92431 0.92474 0.90389 0.90222 0.94667 0.91039 0.92847 0.92729 0.91513 0.92821 0.89827 0.91702 0.91739 0.84122 0.91809 0.92667 0.87663 0.88082 0.88282 0.88001 0.83803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.92 9.28 37.16 0.34 -1.58 16 2 C 0.04 0.52 5.71 -3.82 -0.02 0.49 16 3 N -0.53 -6.81 4.62 -234.62 -1.08 -7.89 16 4 C 0.05 0.49 5.56 -3.82 -0.02 0.47 16 5 C -0.15 -1.48 9.96 37.16 0.37 -1.11 16 6 C 0.05 0.66 5.12 -3.82 -0.02 0.64 16 7 C 0.07 1.10 5.52 37.16 0.21 1.30 16 8 O -0.35 -6.88 10.17 -39.23 -0.40 -7.28 16 9 C 0.47 10.40 7.71 36.01 0.28 10.68 16 10 O -0.51 -12.39 14.73 -18.75 -0.28 -12.67 16 11 C -0.11 -2.47 4.24 -27.88 -0.12 -2.59 16 12 C 0.09 2.05 1.98 -92.92 -0.18 1.87 16 13 H 0.04 0.93 7.90 -51.93 -0.41 0.52 16 14 C -0.48 -12.80 7.27 -34.44 -0.25 -13.05 16 15 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 16 C 0.06 1.60 5.13 -17.82 -0.09 1.51 16 17 N -0.89 -22.79 7.84 55.43 0.43 -22.35 16 18 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 C -0.03 -0.67 4.69 -104.62 -0.49 -1.16 16 23 C -0.13 -2.80 9.70 -39.58 -0.38 -3.18 16 24 C -0.14 -2.75 10.05 -39.58 -0.40 -3.15 16 25 C -0.15 -2.88 10.05 -39.58 -0.40 -3.28 16 26 C -0.14 -2.87 10.05 -39.58 -0.40 -3.27 16 27 C -0.07 -1.51 7.44 -39.59 -0.29 -1.80 16 28 H 0.06 0.57 8.14 -51.92 -0.42 0.15 16 29 H 0.06 0.56 6.26 -51.93 -0.33 0.24 16 30 H 0.06 0.52 6.27 -51.93 -0.33 0.19 16 31 H 0.08 0.94 6.60 -51.93 -0.34 0.59 16 32 H 0.08 1.15 6.33 -51.93 -0.33 0.82 16 33 H 0.04 0.33 5.89 -51.93 -0.31 0.02 16 34 H 0.07 0.71 7.81 -51.93 -0.41 0.30 16 35 H 0.05 0.54 6.71 -51.93 -0.35 0.19 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.55 6.01 -51.93 -0.31 0.24 16 39 H 0.08 0.98 7.86 -51.93 -0.41 0.57 16 40 H 0.06 1.08 6.31 -51.92 -0.33 0.75 16 41 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 42 H 0.14 3.38 4.73 -51.93 -0.25 3.13 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 45 H 0.11 2.12 8.06 -52.49 -0.42 1.69 16 46 H 0.10 1.66 8.06 -52.49 -0.42 1.24 16 47 H 0.10 1.59 8.06 -52.49 -0.42 1.17 16 48 H 0.10 1.81 8.06 -52.48 -0.42 1.38 16 49 H 0.14 3.30 5.08 -52.49 -0.27 3.04 16 LS Contribution 380.50 15.07 5.73 5.73 Total: -1.00 -28.61 380.50 -10.19 -38.80 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -7.70 Total: 6.41 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: -1.87 Total: -17.21 kcal Atomic # 7 Polarization: -29.60 SS G_CDS: -0.65 Total: -30.25 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.68 Total: -19.95 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -28.61 -10.19 -38.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795989496.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.301 kcal (2) G-P(sol) polarization free energy of solvation -28.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds