Wall clock time and date at job start Tue Mar 31 2020 12:47:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46901 * 109.47003 * 2 1 4 4 C 1.46903 * 111.00013 * 297.01827 * 3 2 1 5 5 C 1.53002 * 109.46872 * 287.91548 * 4 3 2 6 6 C 1.46903 * 111.00168 * 60.96538 * 3 2 1 7 7 C 1.53003 * 109.46819 * 66.04786 * 6 3 2 8 8 O 1.45204 * 109.47096 * 65.00158 * 7 6 3 9 9 C 1.34221 * 116.99978 * 180.02562 * 8 7 6 10 10 O 1.20828 * 120.00348 * 0.02562 * 9 8 7 11 11 C 1.50700 * 120.00144 * 180.27246 * 9 8 7 12 12 C 1.53001 * 109.47544 * 179.72046 * 11 9 8 13 13 H 1.08994 * 109.47093 * 305.00851 * 12 11 9 14 14 C 1.50702 * 109.46494 * 65.00149 * 12 11 9 15 15 H 1.07993 * 120.00119 * 235.77658 * 14 12 11 16 16 C 1.37880 * 119.99827 * 55.78300 * 14 12 11 17 17 N 1.31517 * 120.00298 * 2.95843 * 16 14 12 18 18 Si 1.86799 * 119.99883 * 182.96017 * 16 14 12 19 19 H 1.48501 * 109.47205 * 89.99534 * 18 16 14 20 20 H 1.48504 * 109.47518 * 209.99982 * 18 16 14 21 21 H 1.48505 * 109.47191 * 329.99794 * 18 16 14 22 22 C 1.50696 * 109.47093 * 185.00108 * 12 11 9 23 23 C 1.38237 * 119.99581 * 150.00398 * 22 12 11 24 24 C 1.38241 * 119.99836 * 179.78608 * 23 22 12 25 25 C 1.38235 * 119.99837 * 0.44394 * 24 23 22 26 26 C 1.38238 * 119.99889 * 359.81062 * 25 24 23 27 27 C 1.38229 * 120.00271 * 359.97438 * 26 25 24 28 28 H 1.09010 * 109.46801 * 180.70214 * 1 2 3 29 29 H 1.08995 * 109.47372 * 300.69489 * 1 2 3 30 30 H 1.08993 * 109.47290 * 60.70093 * 1 2 3 31 31 H 1.08996 * 109.47085 * 240.00217 * 2 1 3 32 32 H 1.08995 * 109.47663 * 119.99944 * 2 1 3 33 33 H 1.09000 * 109.47033 * 47.90702 * 4 3 2 34 34 H 1.09002 * 109.47411 * 167.91306 * 4 3 2 35 35 H 1.08999 * 109.47425 * 59.86114 * 5 4 3 36 36 H 1.08996 * 109.47227 * 179.86842 * 5 4 3 37 37 H 1.09000 * 109.46960 * 299.86207 * 5 4 3 38 38 H 1.09003 * 109.47144 * 306.05285 * 6 3 2 39 39 H 1.08998 * 109.47397 * 186.04605 * 6 3 2 40 40 H 1.09008 * 109.47241 * 305.00531 * 7 6 3 41 41 H 1.08996 * 109.47402 * 185.00167 * 7 6 3 42 42 H 1.08997 * 109.47341 * 299.72892 * 11 9 8 43 43 H 1.09005 * 109.47014 * 59.72314 * 11 9 8 44 44 H 0.97000 * 120.00086 * 180.02562 * 17 16 14 45 45 H 1.07996 * 120.00379 * 359.97438 * 23 22 12 46 46 H 1.07990 * 120.00190 * 180.27485 * 24 23 22 47 47 H 1.08002 * 120.00006 * 179.83234 * 25 24 23 48 48 H 1.08003 * 119.99801 * 179.97438 * 26 25 24 49 49 H 1.08001 * 120.00036 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6077 2.0890 -1.2218 5 6 2.4114 1.5593 -2.4111 6 6 1.5676 2.1032 1.1991 7 6 2.2191 1.4869 2.4387 8 8 3.6552 1.6950 2.3848 9 6 4.3799 1.2102 3.4053 10 8 3.8326 0.6308 4.3133 11 6 5.8756 1.3936 3.4213 12 6 6.4538 0.7588 4.6877 13 1 5.9554 1.1754 5.5629 14 6 6.2352 -0.7317 4.6471 15 1 5.7141 -1.2232 5.4552 16 6 6.7007 -1.4679 3.5783 17 7 7.3860 -0.8788 2.6227 18 14 6.3580 -3.3019 3.4874 19 1 5.0787 -3.5314 2.7692 20 1 7.4626 -3.9765 2.7591 21 1 6.2604 -3.8559 4.8617 22 6 7.9307 1.0481 4.7652 23 6 8.5499 1.1568 5.9964 24 6 9.9056 1.4178 6.0675 25 6 10.6402 1.5792 4.9077 26 6 10.0199 1.4757 3.6766 27 6 8.6651 1.2103 3.6054 28 1 -0.3633 -1.0277 0.0126 29 1 -0.3634 0.5246 0.8836 30 1 -0.3633 0.5029 -0.8961 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 0.5452 1.9206 -1.3975 34 1 1.7920 3.1570 -1.1054 35 1 2.2290 0.4909 -2.5260 36 1 2.1042 2.0800 -3.3180 37 1 3.4738 1.7298 -2.2365 38 1 0.4835 2.0257 1.2819 39 1 1.8521 3.1527 1.1229 40 1 2.0078 0.4178 2.4667 41 1 1.8168 1.9604 3.3341 42 1 6.3098 0.9144 2.5438 43 1 6.1114 2.4577 3.4081 44 1 7.7132 -1.3967 1.8705 45 1 7.9752 1.0348 6.9026 46 1 10.3902 1.4983 7.0292 47 1 11.6988 1.7858 4.9633 48 1 10.5937 1.6022 2.7705 49 1 8.1805 1.1299 2.6436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795989496.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:47:03 Heat of formation + Delta-G solvation = -69.617934 kcal Electronic energy + Delta-G solvation = -27597.428359 eV Core-core repulsion = 23910.178301 eV Total energy + Delta-G solvation = -3687.250059 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26887 -39.89264 -39.37039 -37.27257 -36.01456 -33.05955 -32.71374 -31.84579 -31.39828 -30.24937 -28.69510 -27.75128 -25.31828 -24.63215 -23.34328 -22.94564 -22.00435 -20.95274 -20.62869 -18.58998 -18.22267 -17.77784 -17.34641 -16.93197 -16.90600 -16.49079 -16.39135 -15.47213 -15.37590 -15.07264 -14.90984 -14.78952 -14.26605 -13.96647 -13.89981 -13.76285 -13.42411 -13.34310 -13.21098 -13.12632 -12.96545 -12.85474 -12.80046 -12.67244 -12.35280 -12.29043 -12.27879 -11.90224 -11.87245 -11.72717 -11.44097 -11.34801 -11.18612 -11.07157 -10.93467 -10.46281 -9.38915 -9.14775 -9.11976 -7.96124 -6.15075 0.89344 1.00900 1.35557 1.38478 1.46095 1.62358 2.04529 2.42989 2.93742 3.17658 3.37906 3.83695 3.96837 4.04927 4.17107 4.25196 4.32883 4.33548 4.37795 4.41607 4.43474 4.49593 4.51121 4.62344 4.64859 4.68708 4.71379 4.80822 4.85102 4.91602 4.99954 5.06235 5.09476 5.14228 5.15286 5.23187 5.29263 5.44934 5.52587 5.57106 5.67142 5.72825 5.88638 5.95161 6.10969 6.14083 6.20874 6.31649 6.41498 6.58320 6.81280 7.20221 7.48821 8.92021 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013856 B = 0.003641 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.368290 B = 7688.819872 C = 8230.787719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.042 3.958 3 N -0.552 5.552 4 C 0.048 3.952 5 C -0.145 4.145 6 C 0.062 3.938 7 C 0.063 3.937 8 O -0.354 6.354 9 C 0.468 3.532 10 O -0.535 6.535 11 C -0.104 4.104 12 C 0.087 3.913 13 H 0.023 0.977 14 C -0.498 4.498 15 H 0.034 0.966 16 C 0.033 3.967 17 N -0.884 5.884 18 Si 0.931 3.069 19 H -0.285 1.285 20 H -0.278 1.278 21 H -0.281 1.281 22 C -0.053 4.053 23 C -0.149 4.149 24 C -0.140 4.140 25 C -0.147 4.147 26 C -0.148 4.148 27 C -0.082 4.082 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.079 0.921 35 H 0.049 0.951 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.050 0.950 41 H 0.073 0.927 42 H 0.127 0.873 43 H 0.084 0.916 44 H 0.263 0.737 45 H 0.106 0.894 46 H 0.134 0.866 47 H 0.136 0.864 48 H 0.125 0.875 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.875 7.869 -7.737 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.086 4.086 3 N -0.276 5.276 4 C -0.079 4.079 5 C -0.203 4.203 6 C -0.066 4.066 7 C -0.011 4.011 8 O -0.271 6.271 9 C 0.313 3.687 10 O -0.424 6.424 11 C -0.142 4.142 12 C 0.068 3.932 13 H 0.041 0.959 14 C -0.536 4.536 15 H 0.052 0.948 16 C -0.167 4.167 17 N -0.522 5.522 18 Si 0.759 3.241 19 H -0.212 1.212 20 H -0.203 1.203 21 H -0.206 1.206 22 C -0.053 4.053 23 C -0.167 4.167 24 C -0.158 4.158 25 C -0.165 4.165 26 C -0.166 4.166 27 C -0.101 4.101 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.094 0.906 37 H 0.065 0.935 38 H 0.099 0.901 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.091 0.909 42 H 0.145 0.855 43 H 0.103 0.897 44 H 0.073 0.927 45 H 0.125 0.875 46 H 0.152 0.848 47 H 0.154 0.846 48 H 0.143 0.857 49 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.466 7.631 -7.651 13.134 hybrid contribution -1.199 -1.644 0.273 2.054 sum -8.665 5.986 -7.377 12.859 Atomic orbital electron populations 1.22351 0.96446 1.03052 1.02498 1.22175 0.94184 0.90269 1.01976 1.62142 1.60618 1.02393 1.02481 1.22184 0.98154 0.98472 0.89106 1.21749 1.00283 1.00986 0.97239 1.22213 0.97775 0.98866 0.87728 1.23181 0.77686 1.00760 0.99457 1.86592 1.21496 1.72665 1.46334 1.24255 0.91763 0.74094 0.78568 1.90541 1.73583 1.40056 1.38258 1.21603 0.85520 1.01209 1.05830 1.17593 0.88869 0.94611 0.92140 0.95856 1.20989 1.34546 0.92737 1.05328 0.94809 1.25303 0.94806 1.00729 0.95885 1.69737 1.36047 1.35725 1.10706 0.85969 0.77558 0.82906 0.77682 1.21161 1.20299 1.20599 1.20196 0.97298 0.94584 0.93250 1.21078 0.95705 1.02874 0.97022 1.21162 0.93538 1.02070 0.99003 1.21212 1.00133 1.02743 0.92377 1.21363 0.95112 1.02006 0.98125 1.21399 0.93977 0.95594 0.99128 0.91526 0.92210 0.91039 0.90475 0.93211 0.92937 0.90290 0.93236 0.90598 0.93490 0.90081 0.88796 0.93136 0.90862 0.85514 0.89749 0.92696 0.87540 0.84833 0.84570 0.85695 0.85175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.35 9.28 71.98 0.67 -2.68 16 2 C 0.04 1.03 5.71 86.30 0.49 1.52 16 3 N -0.55 -13.80 4.62 -896.20 -4.14 -17.94 16 4 C 0.05 0.90 5.56 86.30 0.48 1.38 16 5 C -0.14 -2.73 9.96 71.98 0.72 -2.01 16 6 C 0.06 1.44 5.12 86.30 0.44 1.88 16 7 C 0.06 2.01 5.52 71.98 0.40 2.41 16 8 O -0.35 -14.03 10.17 -51.33 -0.52 -14.55 16 9 C 0.47 21.56 7.71 71.24 0.55 22.11 16 10 O -0.54 -27.40 14.73 21.96 0.32 -27.07 16 11 C -0.10 -4.78 4.24 29.85 0.13 -4.66 16 12 C 0.09 4.34 1.98 -12.29 -0.02 4.31 16 13 H 0.02 1.18 7.90 -2.39 -0.02 1.16 16 14 C -0.50 -27.73 7.27 25.60 0.19 -27.55 16 15 H 0.03 2.00 7.81 -2.91 -0.02 1.98 16 16 C 0.03 1.76 5.13 84.65 0.43 2.20 16 17 N -0.88 -46.08 7.84 21.45 0.17 -45.91 16 18 Si 0.93 44.72 29.54 68.60 2.03 46.75 16 19 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 20 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 21 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 22 C -0.05 -2.45 4.69 -19.87 -0.09 -2.55 16 23 C -0.15 -6.29 9.70 22.27 0.22 -6.07 16 24 C -0.14 -5.02 10.05 22.27 0.22 -4.80 16 25 C -0.15 -5.05 10.05 22.27 0.22 -4.82 16 26 C -0.15 -5.62 10.05 22.27 0.22 -5.39 16 27 C -0.08 -3.64 7.44 22.27 0.17 -3.48 16 28 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.06 1.05 6.26 -2.39 -0.01 1.03 16 30 H 0.07 1.10 6.27 -2.39 -0.01 1.08 16 31 H 0.08 1.85 6.60 -2.39 -0.02 1.84 16 32 H 0.05 1.50 6.33 -2.39 -0.02 1.48 16 33 H 0.05 0.82 5.89 -2.39 -0.01 0.81 16 34 H 0.08 1.37 7.81 -2.39 -0.02 1.36 16 35 H 0.05 0.95 6.71 -2.39 -0.02 0.94 16 36 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.08 1.47 6.01 -2.39 -0.01 1.46 16 39 H 0.09 2.01 7.86 -2.39 -0.02 1.99 16 40 H 0.05 1.75 6.31 -2.38 -0.02 1.73 16 41 H 0.07 2.17 8.13 -2.39 -0.02 2.15 16 42 H 0.13 6.27 4.73 -2.39 -0.01 6.26 16 43 H 0.08 3.44 8.14 -2.38 -0.02 3.42 16 44 H 0.26 13.30 8.31 -92.71 -0.77 12.53 16 45 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 46 H 0.13 3.88 8.06 -2.92 -0.02 3.86 16 47 H 0.14 3.68 8.06 -2.91 -0.02 3.66 16 48 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 49 H 0.13 6.05 5.08 -2.91 -0.01 6.03 16 Total: -1.00 -62.88 380.50 4.22 -58.67 By element: Atomic # 1 Polarization: 27.32 SS G_CDS: 0.93 Total: 28.25 kcal Atomic # 6 Polarization: -33.62 SS G_CDS: 5.43 Total: -28.19 kcal Atomic # 7 Polarization: -59.88 SS G_CDS: -3.97 Total: -63.85 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -0.20 Total: -41.63 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -62.88 4.22 -58.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795989496.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.952 kcal (2) G-P(sol) polarization free energy of solvation -62.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds