Wall clock time and date at job start Tue Mar 31 2020 13:34:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.42895 * 109.47317 * 2 1
4 4 C 1.42893 * 114.00227 * 180.02562 * 3 2 1
5 5 H 1.09003 * 109.47680 * 29.99487 * 4 3 2
6 6 C 1.53007 * 109.47053 * 269.99524 * 4 3 2
7 7 C 1.52997 * 109.46977 * 179.97438 * 6 4 3
8 8 C 1.53001 * 109.47465 * 60.00446 * 7 6 4
9 9 C 1.53007 * 109.46659 * 299.99749 * 8 7 6
10 10 C 1.52997 * 109.46977 * 59.99952 * 9 8 7
11 11 H 1.08998 * 109.47453 * 60.00348 * 10 9 8
12 12 N 1.46900 * 109.46969 * 179.97438 * 10 9 8
13 13 C 1.46894 * 111.00408 * 274.99915 * 12 10 9
14 14 C 1.50701 * 109.47510 * 179.97438 * 13 12 10
15 15 C 1.38298 * 119.92863 * 269.72849 * 14 13 12
16 16 C 1.38109 * 120.06767 * 179.72240 * 15 14 13
17 17 C 1.38881 * 119.92646 * 0.56835 * 16 15 14
18 18 O 1.35750 * 120.06820 * 179.68112 * 17 16 15
19 19 C 1.34830 * 117.00311 * 174.48979 * 18 17 16
20 20 H 1.07999 * 119.99764 * 5.05575 * 19 18 17
21 21 C 1.38652 * 120.00203 * 185.05989 * 19 18 17
22 22 N 1.31553 * 119.99733 * 359.97438 * 21 19 18
23 23 Si 1.86793 * 119.99953 * 179.97438 * 21 19 18
24 24 H 1.48497 * 109.47243 * 359.97438 * 23 21 19
25 25 H 1.48505 * 109.47298 * 119.99928 * 23 21 19
26 26 H 1.48505 * 109.47090 * 239.99865 * 23 21 19
27 27 C 1.38878 * 119.86238 * 359.70748 * 17 16 15
28 28 C 1.38101 * 119.93509 * 359.97438 * 27 17 16
29 29 H 1.09001 * 109.47376 * 59.99864 * 1 2 3
30 30 H 1.08998 * 109.47260 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.46987 * 300.00542 * 1 2 3
32 32 H 1.08996 * 109.47361 * 239.99392 * 2 1 3
33 33 H 1.09005 * 109.47064 * 119.99457 * 2 1 3
34 34 H 1.09001 * 109.47051 * 60.00175 * 6 4 3
35 35 H 1.08994 * 109.47001 * 300.00186 * 6 4 3
36 36 H 1.08994 * 109.47691 * 300.00112 * 7 6 4
37 37 H 1.09001 * 109.47180 * 179.97438 * 7 6 4
38 38 H 1.09006 * 109.47276 * 59.98910 * 8 7 6
39 39 H 1.08997 * 109.47652 * 179.97438 * 8 7 6
40 40 H 1.09002 * 109.46526 * 179.97438 * 9 8 7
41 41 H 1.08994 * 109.47001 * 299.99417 * 9 8 7
42 42 H 1.00906 * 111.00161 * 38.95401 * 12 10 9
43 43 H 1.09005 * 109.47482 * 299.99785 * 13 12 10
44 44 H 1.09000 * 109.47120 * 59.99625 * 13 12 10
45 45 H 1.08001 * 119.96949 * 359.97438 * 15 14 13
46 46 H 1.07994 * 120.03458 * 180.27256 * 16 15 14
47 47 H 0.97004 * 119.99915 * 180.02562 * 22 21 19
48 48 H 1.08000 * 120.03181 * 179.97438 * 27 17 16
49 49 H 1.07991 * 119.96856 * 180.02562 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3472 0.0000
4 6 3.4308 1.4600 -0.0006
5 1 3.8632 0.6016 -0.5146
6 6 3.9398 1.5002 1.4418
7 6 5.4651 1.6204 1.4411
8 6 5.8752 2.9058 0.7197
9 6 5.3661 2.8656 -0.7226
10 6 3.8409 2.7455 -0.7220
11 1 3.4090 3.6042 -0.2081
12 7 3.3522 2.7075 -2.1068
13 6 3.1820 4.0647 -2.6425
14 6 2.6812 3.9855 -4.0616
15 6 3.5823 3.9396 -5.1097
16 6 3.1267 3.8613 -6.4111
17 6 1.7618 3.8406 -6.6673
18 8 1.3107 3.7702 -7.9457
19 6 -0.0199 3.6385 -8.1190
20 1 -0.6817 3.6757 -7.2664
21 6 -0.5385 3.4553 -9.3917
22 7 0.2677 3.4105 -10.4303
23 14 -2.3819 3.2722 -9.6316
24 1 -3.0634 3.3575 -8.3150
25 1 -2.8762 4.3576 -10.5165
26 1 -2.6717 1.9555 -10.2541
27 6 0.8595 3.8926 -5.6129
28 6 1.3215 3.9642 -4.3134
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.8934 -0.5139 -0.8899
33 1 1.8933 -0.5138 0.8901
34 1 3.6481 0.5843 1.9556
35 1 3.5075 2.3586 1.9558
36 1 5.8970 0.7617 0.9272
37 1 5.8277 1.6495 2.4686
38 1 5.4431 3.7646 1.2336
39 1 6.9617 2.9917 0.7196
40 1 5.6579 3.7816 -1.2364
41 1 5.7981 2.0070 -1.2366
42 1 3.9668 2.1621 -2.6924
43 1 2.4608 4.6085 -2.0322
44 1 4.1394 4.5853 -2.6239
45 1 4.6435 3.9609 -4.9102
46 1 3.8308 3.8210 -7.2289
47 1 -0.0952 3.2827 -11.3208
48 1 -0.2024 3.8771 -5.8089
49 1 0.6203 4.0042 -3.4930
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000832624702.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:34:05
Heat of formation + Delta-G solvation = -69.199983 kcal
Electronic energy + Delta-G solvation = -26675.677837 eV
Core-core repulsion = 22988.445902 eV
Total energy + Delta-G solvation = -3687.231935 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-39.72488 -38.94984 -37.12537 -36.56575 -34.67328 -32.27947 -31.59009 -30.57690
-30.09620 -29.49402 -27.66960 -25.48192 -23.99719 -23.19555 -22.27463 -21.92800
-21.72671 -20.56995 -20.00274 -17.93484 -17.08905 -16.83615 -15.94621 -15.71830
-15.22183 -14.95459 -14.57343 -14.47601 -14.27848 -13.88947 -13.73594 -13.62812
-13.53015 -13.33509 -12.96429 -12.89104 -12.68161 -12.61545 -12.33883 -11.99105
-11.77643 -11.65235 -11.48413 -11.35143 -11.24032 -11.12502 -10.97455 -10.86069
-10.74426 -10.67933 -10.54716 -10.39589 -10.31870 -9.41236 -9.27982 -8.80504
-8.19862 -8.10244 -7.13064 -6.42123 -4.00589 2.27351 2.35074 3.14382
3.16291 3.21828 3.59023 3.99568 4.14006 4.46754 4.61324 4.66975
4.81347 4.86719 4.96834 5.01638 5.07792 5.13104 5.15954 5.20732
5.26756 5.30774 5.32507 5.40887 5.43361 5.49626 5.61564 5.64990
5.73918 5.77504 5.80172 5.83360 5.85349 5.89400 5.90213 5.99418
5.99760 6.07372 6.13479 6.26617 6.49156 6.75679 6.96686 7.07867
7.19636 7.26527 7.30261 7.47275 7.49126 7.58881 7.88570 8.03694
9.04038 9.74809 10.76187
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.016831 B = 0.002629 C = 0.002344
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1663.169811 B =10646.950427 C =11942.382290
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C 0.061 3.939
3 O -0.364 6.364
4 C 0.106 3.894
5 H 0.056 0.944
6 C -0.142 4.142
7 C -0.117 4.117
8 C -0.117 4.117
9 C -0.148 4.148
10 C 0.091 3.909
11 H 0.082 0.918
12 N -0.671 5.671
13 C 0.121 3.879
14 C -0.182 4.182
15 C -0.070 4.070
16 C -0.195 4.195
17 C 0.155 3.845
18 O -0.180 6.180
19 C -0.390 4.390
20 H 0.092 0.908
21 C 0.038 3.962
22 N -0.864 5.864
23 Si 0.940 3.060
24 H -0.266 1.266
25 H -0.276 1.276
26 H -0.276 1.276
27 C -0.235 4.235
28 C -0.047 4.047
29 H 0.067 0.933
30 H 0.066 0.934
31 H 0.058 0.942
32 H 0.047 0.953
33 H 0.038 0.962
34 H 0.062 0.938
35 H 0.070 0.930
36 H 0.062 0.938
37 H 0.064 0.936
38 H 0.064 0.936
39 H 0.062 0.938
40 H 0.068 0.932
41 H 0.065 0.935
42 H 0.338 0.662
43 H 0.069 0.931
44 H 0.025 0.975
45 H 0.106 0.894
46 H 0.115 0.885
47 H 0.269 0.731
48 H 0.126 0.874
49 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.063 -4.239 23.197 24.921
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.016 4.016
3 O -0.283 6.283
4 C 0.047 3.953
5 H 0.074 0.926
6 C -0.180 4.180
7 C -0.155 4.155
8 C -0.155 4.155
9 C -0.187 4.187
10 C -0.019 4.019
11 H 0.100 0.900
12 N -0.300 5.300
13 C -0.007 4.007
14 C -0.184 4.184
15 C -0.088 4.088
16 C -0.214 4.214
17 C 0.102 3.898
18 O -0.083 6.083
19 C -0.466 4.466
20 H 0.110 0.890
21 C -0.166 4.166
22 N -0.499 5.499
23 Si 0.765 3.235
24 H -0.191 1.191
25 H -0.202 1.202
26 H -0.202 1.202
27 C -0.254 4.254
28 C -0.066 4.066
29 H 0.086 0.914
30 H 0.085 0.915
31 H 0.077 0.923
32 H 0.065 0.935
33 H 0.056 0.944
34 H 0.081 0.919
35 H 0.089 0.911
36 H 0.080 0.920
37 H 0.082 0.918
38 H 0.082 0.918
39 H 0.081 0.919
40 H 0.086 0.914
41 H 0.084 0.916
42 H 0.157 0.843
43 H 0.088 0.912
44 H 0.044 0.956
45 H 0.124 0.876
46 H 0.133 0.867
47 H 0.079 0.921
48 H 0.143 0.857
49 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges 7.342 -4.154 22.886 24.391
hybrid contribution 0.164 -0.139 -0.274 0.349
sum 7.506 -4.294 22.612 24.209
Atomic orbital electron populations
1.21717 0.93973 1.01866 1.03194 1.22412 0.95503 0.84402 0.99291
1.87973 1.20069 1.25482 1.94767 1.21983 0.81772 0.97711 0.93815
0.92583 1.22067 0.95727 1.02566 0.97636 1.21500 0.95335 0.98095
1.00531 1.21507 1.00528 0.98029 0.95479 1.22288 0.96625 1.02439
0.97393 1.21631 0.91918 0.97675 0.90708 0.89981 1.60556 1.53623
1.14487 1.01332 1.20625 0.98331 0.88947 0.92801 1.19127 0.93557
1.12407 0.93273 1.20469 0.97723 0.98838 0.91814 1.20157 0.93042
1.11668 0.96520 1.19393 0.92698 0.92286 0.85449 1.83974 1.25755
1.78418 1.20171 1.21379 0.79424 1.51280 0.94528 0.89016 1.25283
1.00400 0.96580 0.94314 1.70051 1.35043 1.45929 0.98918 0.85653
0.80664 0.78254 0.78905 1.19067 1.20182 1.20167 1.21173 1.00224
1.11578 0.92463 1.20585 0.94404 0.96129 0.95464 0.91415 0.91546
0.92269 0.93482 0.94391 0.91889 0.91139 0.91971 0.91770 0.91772
0.91907 0.91359 0.91643 0.84343 0.91230 0.95639 0.87605 0.86719
0.92133 0.85659 0.87453
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.48 10.28 37.16 0.38 -1.10 16
2 C 0.06 0.64 6.47 37.16 0.24 0.88 16
3 O -0.36 -4.58 9.85 -35.23 -0.35 -4.93 16
4 C 0.11 1.10 2.26 -26.73 -0.06 1.04 16
5 H 0.06 0.58 7.79 -51.93 -0.40 0.18 16
6 C -0.14 -1.18 5.54 -26.73 -0.15 -1.33 16
7 C -0.12 -0.82 5.92 -26.73 -0.16 -0.97 16
8 C -0.12 -0.85 5.92 -26.73 -0.16 -1.01 16
9 C -0.15 -1.27 5.17 -26.73 -0.14 -1.41 16
10 C 0.09 0.97 2.16 -67.71 -0.15 0.82 16
11 H 0.08 0.94 7.80 -51.93 -0.40 0.53 16
12 N -0.67 -8.66 6.11 -108.00 -0.66 -9.32 16
13 C 0.12 1.68 5.61 -4.98 -0.03 1.65 16
14 C -0.18 -3.16 5.40 -104.58 -0.56 -3.72 16
15 C -0.07 -1.24 9.69 -39.61 -0.38 -1.63 16
16 C -0.19 -4.16 9.99 -39.39 -0.39 -4.56 16
17 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16
18 O -0.18 -5.21 9.76 0.05 0.00 -5.21 16
19 C -0.39 -11.06 9.49 30.89 0.29 -10.77 16
20 H 0.09 2.43 5.20 -52.49 -0.27 2.15 16
21 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16
22 N -0.86 -25.63 13.67 55.48 0.76 -24.87 16
23 Si 0.94 20.81 29.55 -169.99 -5.02 15.79 16
24 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16
25 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16
26 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16
27 C -0.24 -5.25 9.17 -39.39 -0.36 -5.61 16
28 C -0.05 -0.90 9.69 -39.61 -0.38 -1.28 16
29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16
30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16
32 H 0.05 0.50 8.08 -51.93 -0.42 0.09 16
33 H 0.04 0.34 7.87 -51.93 -0.41 -0.07 16
34 H 0.06 0.50 7.87 -51.93 -0.41 0.09 16
35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16
36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16
37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16
38 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16
39 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
40 H 0.07 0.60 7.45 -51.93 -0.39 0.22 16
41 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16
42 H 0.34 4.31 8.46 -39.29 -0.33 3.98 16
43 H 0.07 0.97 8.00 -51.93 -0.42 0.56 16
44 H 0.03 0.32 7.37 -51.93 -0.38 -0.06 16
45 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16
46 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16
47 H 0.27 7.28 8.31 -40.82 -0.34 6.95 16
48 H 0.13 2.82 5.64 -52.49 -0.30 2.53 16
49 H 0.11 1.86 8.06 -52.49 -0.42 1.44 16
LS Contribution 392.45 15.07 5.91 5.91
Total: -1.00 -30.85 392.45 -10.06 -40.91
By element:
Atomic # 1 Polarization: 14.51 SS G_CDS: -8.34 Total: 6.17 kcal
Atomic # 6 Polarization: -22.10 SS G_CDS: -2.37 Total: -24.47 kcal
Atomic # 7 Polarization: -34.29 SS G_CDS: 0.10 Total: -34.19 kcal
Atomic # 8 Polarization: -9.79 SS G_CDS: -0.35 Total: -10.14 kcal
Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -30.85 -10.06 -40.91 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000832624702.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -28.287 kcal
(2) G-P(sol) polarization free energy of solvation -30.850 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.137 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.063 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.200 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds