Wall clock time and date at job start Tue Mar 31 2020 13:34:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.42895 * 109.47317 * 2 1
4 4 C 1.42893 * 114.00227 * 180.02562 * 3 2 1
5 5 H 1.09003 * 109.47680 * 29.99487 * 4 3 2
6 6 C 1.53007 * 109.47053 * 269.99524 * 4 3 2
7 7 C 1.52997 * 109.46977 * 179.97438 * 6 4 3
8 8 C 1.53001 * 109.47465 * 60.00446 * 7 6 4
9 9 C 1.53007 * 109.46659 * 299.99749 * 8 7 6
10 10 C 1.52997 * 109.46977 * 59.99952 * 9 8 7
11 11 H 1.08998 * 109.47453 * 60.00348 * 10 9 8
12 12 N 1.46900 * 109.46969 * 179.97438 * 10 9 8
13 13 C 1.46894 * 111.00408 * 274.99915 * 12 10 9
14 14 C 1.50701 * 109.47510 * 179.97438 * 13 12 10
15 15 C 1.38298 * 119.92863 * 269.72849 * 14 13 12
16 16 C 1.38109 * 120.06767 * 179.72240 * 15 14 13
17 17 C 1.38881 * 119.92646 * 0.56835 * 16 15 14
18 18 O 1.35750 * 120.06820 * 179.68112 * 17 16 15
19 19 C 1.34830 * 117.00311 * 174.48979 * 18 17 16
20 20 H 1.07999 * 119.99764 * 5.05575 * 19 18 17
21 21 C 1.38652 * 120.00203 * 185.05989 * 19 18 17
22 22 N 1.31553 * 119.99733 * 359.97438 * 21 19 18
23 23 Si 1.86793 * 119.99953 * 179.97438 * 21 19 18
24 24 H 1.48497 * 109.47243 * 359.97438 * 23 21 19
25 25 H 1.48505 * 109.47298 * 119.99928 * 23 21 19
26 26 H 1.48505 * 109.47090 * 239.99865 * 23 21 19
27 27 C 1.38878 * 119.86238 * 359.70748 * 17 16 15
28 28 C 1.38101 * 119.93509 * 359.97438 * 27 17 16
29 29 H 1.09001 * 109.47376 * 59.99864 * 1 2 3
30 30 H 1.08998 * 109.47260 * 180.02562 * 1 2 3
31 31 H 1.09003 * 109.46987 * 300.00542 * 1 2 3
32 32 H 1.08996 * 109.47361 * 239.99392 * 2 1 3
33 33 H 1.09005 * 109.47064 * 119.99457 * 2 1 3
34 34 H 1.09001 * 109.47051 * 60.00175 * 6 4 3
35 35 H 1.08994 * 109.47001 * 300.00186 * 6 4 3
36 36 H 1.08994 * 109.47691 * 300.00112 * 7 6 4
37 37 H 1.09001 * 109.47180 * 179.97438 * 7 6 4
38 38 H 1.09006 * 109.47276 * 59.98910 * 8 7 6
39 39 H 1.08997 * 109.47652 * 179.97438 * 8 7 6
40 40 H 1.09002 * 109.46526 * 179.97438 * 9 8 7
41 41 H 1.08994 * 109.47001 * 299.99417 * 9 8 7
42 42 H 1.00906 * 111.00161 * 38.95401 * 12 10 9
43 43 H 1.09005 * 109.47482 * 299.99785 * 13 12 10
44 44 H 1.09000 * 109.47120 * 59.99625 * 13 12 10
45 45 H 1.08001 * 119.96949 * 359.97438 * 15 14 13
46 46 H 1.07994 * 120.03458 * 180.27256 * 16 15 14
47 47 H 0.97004 * 119.99915 * 180.02562 * 22 21 19
48 48 H 1.08000 * 120.03181 * 179.97438 * 27 17 16
49 49 H 1.07991 * 119.96856 * 180.02562 * 28 27 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3472 0.0000
4 6 3.4308 1.4600 -0.0006
5 1 3.8632 0.6016 -0.5146
6 6 3.9398 1.5002 1.4418
7 6 5.4651 1.6204 1.4411
8 6 5.8752 2.9058 0.7197
9 6 5.3661 2.8656 -0.7226
10 6 3.8409 2.7455 -0.7220
11 1 3.4090 3.6042 -0.2081
12 7 3.3522 2.7075 -2.1068
13 6 3.1820 4.0647 -2.6425
14 6 2.6812 3.9855 -4.0616
15 6 3.5823 3.9396 -5.1097
16 6 3.1267 3.8613 -6.4111
17 6 1.7618 3.8406 -6.6673
18 8 1.3107 3.7702 -7.9457
19 6 -0.0199 3.6385 -8.1190
20 1 -0.6817 3.6757 -7.2664
21 6 -0.5385 3.4553 -9.3917
22 7 0.2677 3.4105 -10.4303
23 14 -2.3819 3.2722 -9.6316
24 1 -3.0634 3.3575 -8.3150
25 1 -2.8762 4.3576 -10.5165
26 1 -2.6717 1.9555 -10.2541
27 6 0.8595 3.8926 -5.6129
28 6 1.3215 3.9642 -4.3134
29 1 -0.3634 0.5138 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.8934 -0.5139 -0.8899
33 1 1.8933 -0.5138 0.8901
34 1 3.6481 0.5843 1.9556
35 1 3.5075 2.3586 1.9558
36 1 5.8970 0.7617 0.9272
37 1 5.8277 1.6495 2.4686
38 1 5.4431 3.7646 1.2336
39 1 6.9617 2.9917 0.7196
40 1 5.6579 3.7816 -1.2364
41 1 5.7981 2.0070 -1.2366
42 1 3.9668 2.1621 -2.6924
43 1 2.4608 4.6085 -2.0322
44 1 4.1394 4.5853 -2.6239
45 1 4.6435 3.9609 -4.9102
46 1 3.8308 3.8210 -7.2289
47 1 -0.0952 3.2827 -11.3208
48 1 -0.2024 3.8771 -5.8089
49 1 0.6203 4.0042 -3.4930
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000832624702.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:34:04
Heat of formation + Delta-G solvation = -87.714485 kcal
Electronic energy + Delta-G solvation = -26676.480686 eV
Core-core repulsion = 22988.445902 eV
Total energy + Delta-G solvation = -3688.034784 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.85 seconds
Orbital eigenvalues (eV)
-40.84402 -40.38707 -38.57516 -37.62729 -35.73525 -34.27078 -32.37444 -31.84652
-31.67087 -30.34076 -28.80327 -27.40152 -25.29119 -23.97903 -23.60143 -23.03116
-22.52429 -22.01345 -20.84541 -19.82499 -18.82441 -17.84658 -16.94890 -16.55350
-16.45567 -16.27664 -15.99643 -15.69462 -15.66137 -15.46929 -14.97345 -14.65992
-14.49751 -14.36505 -14.34600 -14.17833 -13.75590 -13.69972 -13.56260 -13.12009
-13.06037 -12.95770 -12.59249 -12.46314 -12.32570 -12.26915 -12.12370 -12.06085
-12.03562 -11.81045 -11.57141 -11.49665 -11.19007 -11.15553 -10.79847 -10.22739
-9.75968 -9.19253 -8.86843 -8.47318 -6.15111 0.61914 0.69537 1.34661
1.42808 1.53036 2.17757 2.78668 2.81961 3.10073 3.42543 3.53208
3.79834 3.97426 4.05897 4.06493 4.15030 4.18579 4.21822 4.24040
4.28946 4.34281 4.41759 4.47830 4.51536 4.54771 4.61299 4.62751
4.72846 4.82433 4.83634 4.92137 4.98602 5.04079 5.10239 5.11164
5.15457 5.17468 5.21120 5.26720 5.30337 5.31814 5.35208 5.48330
5.58150 5.73279 5.85007 6.03716 6.16400 6.27674 6.44822 6.60921
6.97807 7.78894 8.76262
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.016831 B = 0.002629 C = 0.002344
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1663.169811 B =10646.950427 C =11942.382290
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C 0.057 3.943
3 O -0.389 6.389
4 C 0.103 3.897
5 H 0.055 0.945
6 C -0.136 4.136
7 C -0.114 4.114
8 C -0.115 4.115
9 C -0.142 4.142
10 C 0.095 3.905
11 H 0.075 0.925
12 N -0.683 5.683
13 C 0.127 3.873
14 C -0.155 4.155
15 C -0.058 4.058
16 C -0.204 4.204
17 C 0.114 3.886
18 O -0.233 6.233
19 C -0.412 4.412
20 H 0.099 0.901
21 C -0.023 4.023
22 N -0.921 5.921
23 Si 1.018 2.982
24 H -0.253 1.253
25 H -0.267 1.267
26 H -0.268 1.268
27 C -0.244 4.244
28 C -0.051 4.051
29 H 0.047 0.953
30 H 0.084 0.916
31 H 0.061 0.939
32 H 0.040 0.960
33 H 0.056 0.944
34 H 0.067 0.933
35 H 0.065 0.935
36 H 0.065 0.935
37 H 0.077 0.923
38 H 0.064 0.936
39 H 0.074 0.926
40 H 0.069 0.931
41 H 0.068 0.932
42 H 0.340 0.660
43 H 0.073 0.927
44 H 0.049 0.951
45 H 0.148 0.852
46 H 0.114 0.886
47 H 0.273 0.727
48 H 0.114 0.886
49 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.978 -4.500 26.506 28.345
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.019 4.019
3 O -0.309 6.309
4 C 0.044 3.956
5 H 0.073 0.927
6 C -0.174 4.174
7 C -0.151 4.151
8 C -0.153 4.153
9 C -0.181 4.181
10 C -0.015 4.015
11 H 0.093 0.907
12 N -0.313 5.313
13 C -0.001 4.001
14 C -0.156 4.156
15 C -0.077 4.077
16 C -0.223 4.223
17 C 0.064 3.936
18 O -0.140 6.140
19 C -0.488 4.488
20 H 0.116 0.884
21 C -0.220 4.220
22 N -0.559 5.559
23 Si 0.837 3.163
24 H -0.177 1.177
25 H -0.192 1.192
26 H -0.193 1.193
27 C -0.263 4.263
28 C -0.069 4.069
29 H 0.066 0.934
30 H 0.103 0.897
31 H 0.080 0.920
32 H 0.059 0.941
33 H 0.074 0.926
34 H 0.086 0.914
35 H 0.084 0.916
36 H 0.084 0.916
37 H 0.095 0.905
38 H 0.083 0.917
39 H 0.093 0.907
40 H 0.088 0.912
41 H 0.086 0.914
42 H 0.158 0.842
43 H 0.091 0.909
44 H 0.067 0.933
45 H 0.166 0.834
46 H 0.132 0.868
47 H 0.082 0.918
48 H 0.132 0.868
49 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 8.288 -4.412 26.262 27.890
hybrid contribution 0.082 -0.053 -0.978 0.983
sum 8.370 -4.465 25.284 27.005
Atomic orbital electron populations
1.21725 0.93744 1.02832 1.02260 1.22507 0.95759 0.83828 0.99807
1.87938 1.21369 1.26603 1.94982 1.22107 0.80932 0.97454 0.95077
0.92733 1.22011 0.96727 1.02582 0.96100 1.21494 0.94111 0.98128
1.01398 1.21502 1.01239 0.98136 0.94457 1.22219 0.94810 1.02613
0.98482 1.21647 0.93335 0.97556 0.88997 0.90722 1.60471 1.54590
1.13729 1.02546 1.20573 0.99446 0.89984 0.90094 1.19622 0.92686
1.07929 0.95389 1.20880 1.00014 0.96671 0.90091 1.20444 0.91859
1.11652 0.98358 1.19935 0.94437 0.94330 0.84924 1.83936 1.26044
1.81439 1.22540 1.21834 0.79904 1.51775 0.95317 0.88363 1.26572
1.05971 0.95908 0.93584 1.70187 1.37662 1.48512 0.99581 0.84539
0.73742 0.78600 0.79382 1.17654 1.19191 1.19257 1.21229 0.99550
1.12078 0.93464 1.20861 0.95975 0.95558 0.94519 0.93424 0.89707
0.92018 0.94126 0.92621 0.91444 0.91648 0.91640 0.90485 0.91739
0.90704 0.91210 0.91351 0.84158 0.90906 0.93279 0.83409 0.86833
0.91836 0.86782 0.85373
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -2.75 10.28 71.98 0.74 -2.01 16
2 C 0.06 1.13 6.47 71.98 0.47 1.59 16
3 O -0.39 -9.19 9.85 -148.98 -1.47 -10.66 16
4 C 0.10 1.91 2.26 30.60 0.07 1.98 16
5 H 0.05 1.02 7.79 -2.39 -0.02 1.00 16
6 C -0.14 -1.93 5.54 30.60 0.17 -1.76 16
7 C -0.11 -1.22 5.92 30.59 0.18 -1.04 16
8 C -0.12 -1.27 5.92 30.60 0.18 -1.09 16
9 C -0.14 -1.96 5.17 30.60 0.16 -1.80 16
10 C 0.09 1.75 2.16 44.91 0.10 1.85 16
11 H 0.07 1.51 7.80 -2.39 -0.02 1.49 16
12 N -0.68 -15.71 6.11 -495.59 -3.03 -18.74 16
13 C 0.13 3.07 5.61 85.56 0.48 3.55 16
14 C -0.16 -4.97 5.40 -19.83 -0.11 -5.07 16
15 C -0.06 -1.94 9.69 22.25 0.22 -1.72 16
16 C -0.20 -8.79 9.99 22.39 0.22 -8.56 16
17 C 0.11 5.84 6.65 22.58 0.15 5.99 16
18 O -0.23 -14.36 9.76 -22.74 -0.22 -14.58 16
19 C -0.41 -24.64 9.49 67.92 0.64 -23.99 16
20 H 0.10 5.47 5.20 -2.91 -0.02 5.45 16
21 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16
22 N -0.92 -57.40 13.67 21.61 0.30 -57.11 16
23 Si 1.02 43.86 29.55 68.60 2.03 45.89 16
24 H -0.25 -10.16 7.11 99.48 0.71 -9.46 16
25 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16
26 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16
27 C -0.24 -11.16 9.17 22.39 0.21 -10.95 16
28 C -0.05 -1.87 9.69 22.25 0.22 -1.66 16
29 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16
30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16
31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16
32 H 0.04 0.83 8.08 -2.39 -0.02 0.81 16
33 H 0.06 0.88 7.87 -2.38 -0.02 0.86 16
34 H 0.07 0.90 7.87 -2.39 -0.02 0.88 16
35 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
36 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
37 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16
38 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16
39 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16
40 H 0.07 0.96 7.45 -2.39 -0.02 0.94 16
41 H 0.07 0.92 8.13 -2.39 -0.02 0.90 16
42 H 0.34 7.64 8.46 -89.69 -0.76 6.88 16
43 H 0.07 1.77 8.00 -2.38 -0.02 1.76 16
44 H 0.05 1.00 7.37 -2.39 -0.02 0.98 16
45 H 0.15 3.73 8.06 -2.91 -0.02 3.70 16
46 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16
47 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16
48 H 0.11 5.37 5.64 -2.91 -0.02 5.35 16
49 H 0.13 4.21 8.06 -2.92 -0.02 4.19 16
Total: -1.00 -71.46 392.45 2.33 -69.14
By element:
Atomic # 1 Polarization: 31.48 SS G_CDS: 0.17 Total: 31.64 kcal
Atomic # 6 Polarization: -50.14 SS G_CDS: 4.56 Total: -45.59 kcal
Atomic # 7 Polarization: -73.12 SS G_CDS: -2.73 Total: -75.85 kcal
Atomic # 8 Polarization: -23.55 SS G_CDS: -1.69 Total: -25.24 kcal
Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal
Total: -71.46 2.33 -69.14 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000832624702.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -18.579 kcal
(2) G-P(sol) polarization free energy of solvation -71.464 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.043 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.328 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.136 kcal
(6) G-S(sol) free energy of system = (1) + (5) -87.714 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.85 seconds