Wall clock time and date at job start Tue Mar 31 2020 13:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42891 * 109.47380 * 2 1 4 4 C 1.42898 * 114.00431 * 179.97438 * 3 2 1 5 5 H 1.09010 * 110.81389 * 26.66499 * 4 3 2 6 6 C 1.54888 * 110.75859 * 263.33082 * 4 3 2 7 7 C 1.54260 * 104.19904 * 203.73686 * 6 4 3 8 8 C 1.53879 * 106.59706 * 23.60849 * 7 6 4 9 9 C 1.54264 * 106.59819 * 359.97438 * 8 7 6 10 10 H 1.09000 * 110.48442 * 95.19815 * 9 8 7 11 11 N 1.46898 * 110.48718 * 217.71026 * 9 8 7 12 12 C 1.46901 * 110.99847 * 273.54612 * 11 9 8 13 13 H 1.09001 * 109.47415 * 325.00062 * 12 11 9 14 14 C 1.52998 * 109.47204 * 84.99978 * 12 11 9 15 15 C 1.50707 * 109.46980 * 205.00214 * 12 11 9 16 16 C 1.38294 * 119.93175 * 140.00007 * 15 12 11 17 17 C 1.38102 * 120.07016 * 180.02562 * 16 15 12 18 18 C 1.38880 * 119.92770 * 0.02562 * 17 16 15 19 19 O 1.35748 * 120.06657 * 179.97438 * 18 17 16 20 20 C 1.34830 * 117.00171 * 5.52849 * 19 18 17 21 21 H 1.07998 * 120.00312 * 354.95212 * 20 19 18 22 22 C 1.38657 * 119.99975 * 174.94158 * 20 19 18 23 23 N 1.31554 * 119.99871 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99903 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47334 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47090 * 240.00271 * 24 22 20 27 27 H 1.48507 * 109.47091 * 120.00277 * 24 22 20 28 28 C 1.38881 * 119.86194 * 0.24922 * 18 17 16 29 29 C 1.38094 * 119.92834 * 359.49425 * 28 18 17 30 30 H 1.09009 * 109.46753 * 60.00017 * 1 2 3 31 31 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47528 * 300.00330 * 1 2 3 33 33 H 1.09004 * 109.47254 * 239.99390 * 2 1 3 34 34 H 1.08999 * 109.46621 * 119.99909 * 2 1 3 35 35 H 1.09003 * 110.48739 * 85.06313 * 6 4 3 36 36 H 1.08998 * 110.59708 * 322.47488 * 6 4 3 37 37 H 1.09000 * 110.03916 * 264.32603 * 7 6 4 38 38 H 1.08995 * 110.03541 * 142.88918 * 7 6 4 39 39 H 1.09000 * 110.03647 * 240.71214 * 8 7 6 40 40 H 1.09003 * 110.07268 * 119.30369 * 8 7 6 41 41 H 1.00901 * 111.00028 * 149.59655 * 11 9 8 42 42 H 1.09003 * 109.47157 * 299.99842 * 14 12 11 43 43 H 1.09001 * 109.46866 * 59.99747 * 14 12 11 44 44 H 1.09001 * 109.47162 * 180.02562 * 14 12 11 45 45 H 1.08002 * 119.97005 * 0.04250 * 16 15 12 46 46 H 1.07996 * 120.03498 * 179.97438 * 17 16 15 47 47 H 0.97000 * 120.00340 * 0.02562 * 23 22 20 48 48 H 1.07996 * 120.03114 * 179.72839 * 28 18 17 49 49 H 1.08003 * 119.96430 * 180.23503 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8891 0.5828 -0.4564 6 6 3.9642 1.6713 1.4393 7 6 5.3281 2.3638 1.2394 8 6 5.2742 3.0520 -0.1359 9 6 3.8797 2.7531 -0.7239 10 1 3.1918 3.5708 -0.5089 11 7 3.9703 2.5265 -2.1725 12 6 3.8933 3.7949 -2.9095 13 1 3.2152 4.4745 -2.3933 14 6 5.2853 4.4249 -2.9873 15 6 3.3805 3.5359 -4.3028 16 6 2.4824 4.4138 -4.8818 17 6 2.0102 4.1789 -6.1582 18 6 2.4378 3.0595 -6.8601 19 8 1.9751 2.8256 -8.1147 20 6 1.1930 3.7757 -8.6657 21 1 0.8942 4.6343 -8.0826 22 6 0.7726 3.6507 -9.9811 23 7 1.1364 2.6047 -10.6912 24 14 -0.3103 4.9673 -10.7447 25 1 -0.5752 6.0321 -9.7440 26 1 -1.5959 4.3620 -11.1761 27 1 0.3797 5.5548 -11.9211 28 6 3.3354 2.1768 -6.2737 29 6 3.8079 2.4200 -4.9991 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 4.0932 0.7132 1.9429 36 1 3.2905 2.3124 2.0077 37 1 6.1285 1.6241 1.2555 38 1 5.4886 3.1054 2.0219 39 1 6.0484 2.6463 -0.7871 40 1 5.4088 4.1276 -0.0215 41 1 3.2572 1.8838 -2.4833 42 1 5.6562 4.6122 -1.9796 43 1 5.9634 3.7453 -3.5035 44 1 5.2281 5.3663 -3.5338 45 1 2.1500 5.2841 -4.3354 46 1 1.3085 4.8646 -6.6096 47 1 1.6984 1.9208 -10.2946 48 1 3.6664 1.3031 -6.8153 49 1 4.5088 1.7359 -4.5439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000834912898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:33 Heat of formation + Delta-G solvation = -69.614575 kcal Electronic energy + Delta-G solvation = -26865.478040 eV Core-core repulsion = 23178.228127 eV Total energy + Delta-G solvation = -3687.249913 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.71178 -39.07532 -37.48796 -36.50032 -34.64950 -32.25037 -31.44023 -30.57928 -30.15706 -28.25839 -27.60033 -26.36306 -24.96615 -23.03839 -22.36992 -21.93062 -21.02309 -20.14918 -19.90071 -18.30007 -17.36692 -16.91340 -16.32041 -15.74506 -15.35421 -15.12279 -14.75973 -14.42104 -14.11529 -14.03532 -13.72978 -13.63619 -13.44078 -13.22823 -12.97778 -12.88106 -12.65306 -12.44352 -12.28759 -12.14001 -11.77666 -11.64815 -11.45058 -11.32488 -11.22066 -11.10495 -10.93065 -10.77261 -10.67513 -10.58874 -10.43281 -10.32723 -10.17637 -9.64529 -9.39871 -8.75378 -8.42105 -8.21967 -7.23684 -6.76948 -4.06084 2.17245 2.25990 3.23622 3.31018 3.40860 3.40914 4.11015 4.12423 4.29610 4.51460 4.56671 4.76036 4.84982 4.93371 5.05494 5.06050 5.13495 5.15337 5.21299 5.23519 5.30132 5.32928 5.39436 5.49630 5.59177 5.65817 5.66480 5.68740 5.72010 5.77387 5.81483 5.85437 5.90700 5.93719 5.98395 6.08605 6.14708 6.19074 6.35830 6.46780 6.66210 6.81814 7.00578 7.06745 7.09022 7.28688 7.39378 7.50477 7.58876 7.74519 8.40678 8.92454 9.61780 10.67270 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.002666 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.058746 B =10500.674057 C =11411.481018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.380 6.380 4 C 0.080 3.920 5 H 0.078 0.922 6 C -0.142 4.142 7 C -0.121 4.121 8 C -0.114 4.114 9 C 0.087 3.913 10 H 0.057 0.943 11 N -0.676 5.676 12 C 0.143 3.857 13 H 0.042 0.958 14 C -0.135 4.135 15 C -0.188 4.188 16 C -0.065 4.065 17 C -0.230 4.230 18 C 0.158 3.842 19 O -0.203 6.203 20 C -0.472 4.472 21 H 0.084 0.916 22 C 0.009 3.991 23 N -0.883 5.883 24 Si 1.101 2.899 25 H -0.284 1.284 26 H -0.279 1.279 27 H -0.279 1.279 28 C -0.198 4.198 29 C -0.056 4.056 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.045 0.955 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.347 0.653 42 H 0.051 0.949 43 H 0.060 0.940 44 H 0.052 0.948 45 H 0.105 0.895 46 H 0.127 0.873 47 H 0.282 0.718 48 H 0.114 0.886 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -1.556 23.519 24.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.019 4.019 3 O -0.299 6.299 4 C 0.022 3.978 5 H 0.096 0.904 6 C -0.180 4.180 7 C -0.159 4.159 8 C -0.152 4.152 9 C -0.024 4.024 10 H 0.075 0.925 11 N -0.308 5.308 12 C 0.034 3.966 13 H 0.060 0.940 14 C -0.193 4.193 15 C -0.189 4.189 16 C -0.084 4.084 17 C -0.249 4.249 18 C 0.105 3.895 19 O -0.108 6.108 20 C -0.548 4.548 21 H 0.102 0.898 22 C -0.196 4.196 23 N -0.515 5.515 24 Si 0.926 3.074 25 H -0.209 1.209 26 H -0.205 1.205 27 H -0.205 1.205 28 C -0.217 4.217 29 C -0.074 4.074 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.082 0.918 41 H 0.167 0.833 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.123 0.877 46 H 0.145 0.855 47 H 0.093 0.907 48 H 0.132 0.868 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 5.074 -1.178 21.898 22.509 hybrid contribution -0.044 -0.344 1.599 1.636 sum 5.030 -1.522 23.497 24.078 Atomic orbital electron populations 1.21750 0.93766 1.02244 1.03200 1.22500 0.95616 0.83793 0.99958 1.87924 1.20679 1.26455 1.94874 1.23283 0.80877 0.98485 0.95151 0.90433 1.22730 0.97279 1.00941 0.97082 1.22035 0.96792 0.99591 0.97530 1.22210 0.97111 1.00260 0.95602 1.22446 0.96009 0.95805 0.88092 0.92509 1.60742 1.54628 1.13200 1.02206 1.20197 0.96015 0.89680 0.90676 0.94046 1.21867 0.96401 1.00064 1.00975 1.19303 1.04142 0.98980 0.96500 1.20606 0.95688 0.97578 0.94500 1.21133 1.06672 1.01009 0.96110 1.19263 0.91609 0.92854 0.85796 1.83664 1.59059 1.43824 1.24235 1.22272 1.30257 1.03311 0.98925 0.89839 1.26530 0.99505 1.02130 0.91418 1.70510 1.32501 1.09357 1.39149 0.83001 0.75409 0.73242 0.75754 1.20914 1.20501 1.20493 1.20225 1.02780 1.01852 0.96850 1.20473 0.97857 0.96225 0.92853 0.91614 0.91149 0.92037 0.93154 0.93664 0.91672 0.90751 0.91646 0.91714 0.90101 0.91750 0.83339 0.93019 0.92098 0.92855 0.87700 0.85540 0.90742 0.86796 0.86291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 37.16 0.38 -0.94 16 2 C 0.06 0.54 6.50 37.16 0.24 0.78 16 3 O -0.38 -4.39 10.13 -35.23 -0.36 -4.75 16 4 C 0.08 0.81 2.79 -24.75 -0.07 0.74 16 5 H 0.08 0.77 7.83 -51.92 -0.41 0.37 16 6 C -0.14 -1.19 6.55 -25.08 -0.16 -1.36 16 7 C -0.12 -0.94 6.80 -25.61 -0.17 -1.11 16 8 C -0.11 -1.04 4.91 -25.61 -0.13 -1.17 16 9 C 0.09 0.95 2.89 -66.07 -0.19 0.76 16 10 H 0.06 0.70 7.51 -51.93 -0.39 0.31 16 11 N -0.68 -8.40 5.52 -99.23 -0.55 -8.95 16 12 C 0.14 1.98 2.82 -68.86 -0.19 1.78 16 13 H 0.04 0.58 7.33 -51.93 -0.38 0.20 16 14 C -0.14 -1.70 9.19 37.16 0.34 -1.36 16 15 C -0.19 -3.20 4.72 -104.58 -0.49 -3.69 16 16 C -0.06 -1.21 9.66 -39.61 -0.38 -1.60 16 17 C -0.23 -5.11 9.17 -39.39 -0.36 -5.47 16 18 C 0.16 3.85 6.65 -39.11 -0.26 3.59 16 19 O -0.20 -5.79 9.16 0.06 0.00 -5.79 16 20 C -0.47 -13.41 9.49 30.89 0.29 -13.12 16 21 H 0.08 2.25 5.20 -52.49 -0.27 1.98 16 22 C 0.01 0.26 5.49 -17.52 -0.10 0.17 16 23 N -0.88 -26.57 13.70 55.48 0.76 -25.81 16 24 Si 1.10 24.02 29.92 -169.99 -5.09 18.94 16 25 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 27 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 28 C -0.20 -4.18 9.99 -39.40 -0.39 -4.57 16 29 C -0.06 -0.99 8.99 -39.61 -0.36 -1.35 16 30 H 0.06 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.46 8.12 -51.93 -0.42 0.04 16 34 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 40 H 0.06 0.57 7.38 -51.93 -0.38 0.19 16 41 H 0.35 4.70 7.72 -39.29 -0.30 4.39 16 42 H 0.05 0.56 5.87 -51.93 -0.30 0.26 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.10 1.71 8.03 -52.49 -0.42 1.29 16 46 H 0.13 2.87 5.64 -52.49 -0.30 2.57 16 47 H 0.28 8.69 7.97 -40.82 -0.33 8.37 16 48 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 49 H 0.12 1.87 7.71 -52.48 -0.40 1.47 16 LS Contribution 390.47 15.07 5.88 5.88 Total: -1.00 -30.23 390.47 -9.52 -39.75 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -8.17 Total: 8.64 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: -2.00 Total: -27.91 kcal Atomic # 7 Polarization: -34.98 SS G_CDS: 0.21 Total: -34.77 kcal Atomic # 8 Polarization: -10.18 SS G_CDS: -0.36 Total: -10.54 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -5.09 Total: 18.94 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -30.23 -9.52 -39.75 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834912898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.860 kcal (2) G-P(sol) polarization free energy of solvation -30.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds