Wall clock time and date at job start Tue Mar 31 2020 13:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42891 * 109.47380 * 2 1 4 4 C 1.42898 * 114.00431 * 179.97438 * 3 2 1 5 5 H 1.09010 * 110.81389 * 26.66499 * 4 3 2 6 6 C 1.54888 * 110.75859 * 263.33082 * 4 3 2 7 7 C 1.54260 * 104.19904 * 203.73686 * 6 4 3 8 8 C 1.53879 * 106.59706 * 23.60849 * 7 6 4 9 9 C 1.54264 * 106.59819 * 359.97438 * 8 7 6 10 10 H 1.09000 * 110.48442 * 95.19815 * 9 8 7 11 11 N 1.46898 * 110.48718 * 217.71026 * 9 8 7 12 12 C 1.46901 * 110.99847 * 273.54612 * 11 9 8 13 13 H 1.09001 * 109.47415 * 325.00062 * 12 11 9 14 14 C 1.52998 * 109.47204 * 84.99978 * 12 11 9 15 15 C 1.50707 * 109.46980 * 205.00214 * 12 11 9 16 16 C 1.38294 * 119.93175 * 140.00007 * 15 12 11 17 17 C 1.38102 * 120.07016 * 180.02562 * 16 15 12 18 18 C 1.38880 * 119.92770 * 0.02562 * 17 16 15 19 19 O 1.35748 * 120.06657 * 179.97438 * 18 17 16 20 20 C 1.34830 * 117.00171 * 5.52849 * 19 18 17 21 21 H 1.07998 * 120.00312 * 354.95212 * 20 19 18 22 22 C 1.38657 * 119.99975 * 174.94158 * 20 19 18 23 23 N 1.31554 * 119.99871 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99903 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47334 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47090 * 240.00271 * 24 22 20 27 27 H 1.48507 * 109.47091 * 120.00277 * 24 22 20 28 28 C 1.38881 * 119.86194 * 0.24922 * 18 17 16 29 29 C 1.38094 * 119.92834 * 359.49425 * 28 18 17 30 30 H 1.09009 * 109.46753 * 60.00017 * 1 2 3 31 31 H 1.08997 * 109.47385 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47528 * 300.00330 * 1 2 3 33 33 H 1.09004 * 109.47254 * 239.99390 * 2 1 3 34 34 H 1.08999 * 109.46621 * 119.99909 * 2 1 3 35 35 H 1.09003 * 110.48739 * 85.06313 * 6 4 3 36 36 H 1.08998 * 110.59708 * 322.47488 * 6 4 3 37 37 H 1.09000 * 110.03916 * 264.32603 * 7 6 4 38 38 H 1.08995 * 110.03541 * 142.88918 * 7 6 4 39 39 H 1.09000 * 110.03647 * 240.71214 * 8 7 6 40 40 H 1.09003 * 110.07268 * 119.30369 * 8 7 6 41 41 H 1.00901 * 111.00028 * 149.59655 * 11 9 8 42 42 H 1.09003 * 109.47157 * 299.99842 * 14 12 11 43 43 H 1.09001 * 109.46866 * 59.99747 * 14 12 11 44 44 H 1.09001 * 109.47162 * 180.02562 * 14 12 11 45 45 H 1.08002 * 119.97005 * 0.04250 * 16 15 12 46 46 H 1.07996 * 120.03498 * 179.97438 * 17 16 15 47 47 H 0.97000 * 120.00340 * 0.02562 * 23 22 20 48 48 H 1.07996 * 120.03114 * 179.72839 * 28 18 17 49 49 H 1.08003 * 119.96430 * 180.23503 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.8891 0.5828 -0.4564 6 6 3.9642 1.6713 1.4393 7 6 5.3281 2.3638 1.2394 8 6 5.2742 3.0520 -0.1359 9 6 3.8797 2.7531 -0.7239 10 1 3.1918 3.5708 -0.5089 11 7 3.9703 2.5265 -2.1725 12 6 3.8933 3.7949 -2.9095 13 1 3.2152 4.4745 -2.3933 14 6 5.2853 4.4249 -2.9873 15 6 3.3805 3.5359 -4.3028 16 6 2.4824 4.4138 -4.8818 17 6 2.0102 4.1789 -6.1582 18 6 2.4378 3.0595 -6.8601 19 8 1.9751 2.8256 -8.1147 20 6 1.1930 3.7757 -8.6657 21 1 0.8942 4.6343 -8.0826 22 6 0.7726 3.6507 -9.9811 23 7 1.1364 2.6047 -10.6912 24 14 -0.3103 4.9673 -10.7447 25 1 -0.5752 6.0321 -9.7440 26 1 -1.5959 4.3620 -11.1761 27 1 0.3797 5.5548 -11.9211 28 6 3.3354 2.1768 -6.2737 29 6 3.8079 2.4200 -4.9991 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8900 35 1 4.0932 0.7132 1.9429 36 1 3.2905 2.3124 2.0077 37 1 6.1285 1.6241 1.2555 38 1 5.4886 3.1054 2.0219 39 1 6.0484 2.6463 -0.7871 40 1 5.4088 4.1276 -0.0215 41 1 3.2572 1.8838 -2.4833 42 1 5.6562 4.6122 -1.9796 43 1 5.9634 3.7453 -3.5035 44 1 5.2281 5.3663 -3.5338 45 1 2.1500 5.2841 -4.3354 46 1 1.3085 4.8646 -6.6096 47 1 1.6984 1.9208 -10.2946 48 1 3.6664 1.3031 -6.8153 49 1 4.5088 1.7359 -4.5439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000834912898.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:34:32 Heat of formation + Delta-G solvation = -87.251231 kcal Electronic energy + Delta-G solvation = -26866.242823 eV Core-core repulsion = 23178.228127 eV Total energy + Delta-G solvation = -3688.014696 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.06253 -40.31566 -38.94867 -37.55000 -35.82670 -34.25288 -32.17920 -31.96797 -31.57449 -29.47720 -28.56268 -27.23607 -26.97709 -23.94641 -23.73438 -23.50185 -21.83697 -21.41143 -20.86571 -20.13569 -18.76341 -18.10094 -17.40665 -17.03810 -16.49577 -16.09288 -15.94480 -15.76780 -15.71386 -15.61309 -15.21264 -14.94914 -14.67529 -14.22436 -14.02057 -13.94843 -13.88038 -13.68823 -13.14867 -13.01862 -12.96268 -12.89935 -12.64900 -12.51304 -12.29945 -12.20937 -12.14253 -12.05159 -11.93047 -11.88523 -11.65195 -11.38475 -11.30725 -11.27312 -10.76673 -10.42014 -9.86658 -9.43737 -9.02496 -8.94977 -6.25962 0.50757 0.59653 1.47176 1.61169 1.74772 2.33772 2.65518 2.79446 3.08551 3.18118 3.32527 3.54573 3.78499 3.89020 4.00731 4.05333 4.14195 4.15070 4.24388 4.32606 4.37571 4.46363 4.47191 4.52301 4.54311 4.60332 4.63025 4.68297 4.74937 4.86071 4.94206 4.95242 4.99342 5.04656 5.06118 5.08426 5.18647 5.21670 5.22634 5.24795 5.30843 5.42714 5.44336 5.50626 5.66170 5.70427 6.03059 6.17300 6.27856 6.29640 6.41716 6.85023 7.61164 8.49207 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.017163 B = 0.002666 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.058746 B =10500.674057 C =11411.481018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.053 3.947 3 O -0.402 6.402 4 C 0.078 3.922 5 H 0.079 0.921 6 C -0.137 4.137 7 C -0.116 4.116 8 C -0.110 4.110 9 C 0.085 3.915 10 H 0.045 0.955 11 N -0.672 5.672 12 C 0.147 3.853 13 H 0.047 0.953 14 C -0.132 4.132 15 C -0.160 4.160 16 C -0.066 4.066 17 C -0.239 4.239 18 C 0.117 3.883 19 O -0.253 6.253 20 C -0.487 4.487 21 H 0.090 0.910 22 C -0.044 4.044 23 N -0.918 5.918 24 Si 1.150 2.850 25 H -0.260 1.260 26 H -0.269 1.269 27 H -0.269 1.269 28 C -0.203 4.203 29 C -0.045 4.045 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.062 0.938 33 H 0.049 0.951 34 H 0.061 0.939 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.340 0.660 42 H 0.073 0.927 43 H 0.056 0.944 44 H 0.051 0.949 45 H 0.136 0.864 46 H 0.115 0.885 47 H 0.261 0.739 48 H 0.114 0.886 49 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.295 -0.634 26.906 27.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.023 4.023 3 O -0.322 6.322 4 C 0.020 3.980 5 H 0.097 0.903 6 C -0.176 4.176 7 C -0.154 4.154 8 C -0.148 4.148 9 C -0.025 4.025 10 H 0.063 0.937 11 N -0.303 5.303 12 C 0.038 3.962 13 H 0.065 0.935 14 C -0.189 4.189 15 C -0.161 4.161 16 C -0.084 4.084 17 C -0.259 4.259 18 C 0.067 3.933 19 O -0.160 6.160 20 C -0.563 4.563 21 H 0.107 0.893 22 C -0.241 4.241 23 N -0.553 5.553 24 Si 0.965 3.035 25 H -0.184 1.184 26 H -0.194 1.194 27 H -0.194 1.194 28 C -0.223 4.223 29 C -0.063 4.063 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.067 0.933 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.159 0.841 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.154 0.846 46 H 0.133 0.867 47 H 0.069 0.931 48 H 0.132 0.868 49 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 6.111 -0.253 25.359 26.087 hybrid contribution -0.200 -0.667 0.938 1.168 sum 5.911 -0.919 26.297 26.969 Atomic orbital electron populations 1.21766 0.93532 1.03191 1.02360 1.22629 0.95876 0.83104 1.00669 1.87897 1.21527 1.27721 1.95060 1.23350 0.80398 0.98004 0.96206 0.90304 1.22699 0.97415 1.01593 0.95855 1.22023 0.96581 0.99946 0.96893 1.22178 0.95564 1.00803 0.96238 1.22525 0.97023 0.95980 0.86985 0.93742 1.60799 1.54188 1.12113 1.03220 1.20220 0.96940 0.90645 0.88425 0.93511 1.21834 0.95085 0.99666 1.02348 1.19794 1.01379 0.97131 0.97751 1.20937 0.95409 0.98853 0.93208 1.21215 1.06842 1.00305 0.97493 1.19815 0.93370 0.94843 0.85246 1.83643 1.61132 1.44874 1.26382 1.22630 1.30447 1.03689 0.99508 0.89280 1.28379 1.00240 1.03397 0.92038 1.70652 1.34691 1.10508 1.39443 0.82503 0.73978 0.71226 0.75746 1.18439 1.19419 1.19432 1.20493 1.02244 1.01427 0.98105 1.20769 0.97414 0.96751 0.91356 0.93314 0.89374 0.91939 0.93265 0.92058 0.90481 0.91284 0.90666 0.90594 0.90410 0.91182 0.84110 0.90857 0.92529 0.92950 0.84634 0.86679 0.93090 0.86751 0.83378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.44 10.28 71.98 0.74 -1.70 16 2 C 0.05 0.91 6.50 71.98 0.47 1.38 16 3 O -0.40 -8.62 10.13 -148.98 -1.51 -10.13 16 4 C 0.08 1.40 2.79 31.88 0.09 1.48 16 5 H 0.08 1.38 7.83 -2.38 -0.02 1.36 16 6 C -0.14 -1.91 6.55 31.67 0.21 -1.70 16 7 C -0.12 -1.39 6.80 31.32 0.21 -1.17 16 8 C -0.11 -1.63 4.91 31.32 0.15 -1.48 16 9 C 0.08 1.62 2.89 45.98 0.13 1.75 16 10 H 0.04 0.98 7.51 -2.39 -0.02 0.96 16 11 N -0.67 -14.76 5.52 -467.87 -2.58 -17.34 16 12 C 0.15 3.57 2.82 44.17 0.12 3.70 16 13 H 0.05 1.14 7.33 -2.39 -0.02 1.13 16 14 C -0.13 -2.83 9.19 71.98 0.66 -2.17 16 15 C -0.16 -5.04 4.72 -19.83 -0.09 -5.14 16 16 C -0.07 -2.34 9.66 22.25 0.21 -2.12 16 17 C -0.24 -10.76 9.17 22.39 0.21 -10.56 16 18 C 0.12 5.91 6.65 22.58 0.15 6.06 16 19 O -0.25 -15.28 9.16 -22.71 -0.21 -15.49 16 20 C -0.49 -29.02 9.49 67.92 0.64 -28.38 16 21 H 0.09 4.99 5.20 -2.91 -0.02 4.98 16 22 C -0.04 -2.60 5.49 84.83 0.47 -2.13 16 23 N -0.92 -58.17 13.70 21.61 0.30 -57.87 16 24 Si 1.15 49.04 29.92 68.60 2.05 51.10 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.24 16 26 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 27 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 28 C -0.20 -8.69 9.99 22.39 0.22 -8.47 16 29 C -0.04 -1.52 8.99 22.25 0.20 -1.32 16 30 H 0.05 0.93 8.14 -2.38 -0.02 0.92 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.05 0.83 8.12 -2.39 -0.02 0.81 16 34 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 39 H 0.08 1.24 8.04 -2.39 -0.02 1.22 16 40 H 0.07 0.97 7.38 -2.39 -0.02 0.96 16 41 H 0.34 8.36 7.72 -89.69 -0.69 7.67 16 42 H 0.07 1.29 5.87 -2.39 -0.01 1.28 16 43 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.14 4.01 8.03 -2.91 -0.02 3.99 16 46 H 0.12 5.37 5.64 -2.91 -0.02 5.35 16 47 H 0.26 17.21 7.97 -92.71 -0.74 16.47 16 48 H 0.11 4.78 8.06 -2.91 -0.02 4.76 16 49 H 0.15 4.21 7.71 -2.91 -0.02 4.18 16 Total: -1.00 -69.84 390.47 3.12 -66.72 By element: Atomic # 1 Polarization: 34.71 SS G_CDS: 0.27 Total: 34.98 kcal Atomic # 6 Polarization: -56.76 SS G_CDS: 4.80 Total: -51.96 kcal Atomic # 7 Polarization: -72.93 SS G_CDS: -2.29 Total: -75.22 kcal Atomic # 8 Polarization: -23.89 SS G_CDS: -1.72 Total: -25.61 kcal Atomic # 14 Polarization: 49.04 SS G_CDS: 2.05 Total: 51.10 kcal Total: -69.84 3.12 -66.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000834912898.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.535 kcal (2) G-P(sol) polarization free energy of solvation -69.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds