Wall clock time and date at job start Tue Mar 31 2020 13:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47431 * 2 1 4 4 C 1.42905 * 114.00278 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47231 * 150.00258 * 4 3 2 6 6 C 1.52999 * 109.47024 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47166 * 300.00212 * 6 5 4 8 8 N 1.46905 * 109.46896 * 180.02562 * 7 6 5 9 9 C 1.46902 * 110.99762 * 154.99825 * 8 7 6 10 10 C 1.50701 * 109.46725 * 179.97438 * 9 8 7 11 11 C 1.38307 * 119.92751 * 269.72227 * 10 9 8 12 12 C 1.38105 * 120.06147 * 179.73104 * 11 10 9 13 13 C 1.38872 * 119.93430 * 0.56469 * 12 11 10 14 14 O 1.35750 * 120.06955 * 179.68276 * 13 12 11 15 15 C 1.34838 * 116.99807 * 174.49013 * 14 13 12 16 16 H 1.07994 * 119.99916 * 5.06161 * 15 14 13 17 17 C 1.38659 * 119.99657 * 185.05899 * 15 14 13 18 18 N 1.31560 * 120.00104 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99599 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46912 * 90.00267 * 19 17 15 21 21 H 1.48504 * 109.46679 * 209.99903 * 19 17 15 22 22 H 1.48496 * 109.47497 * 329.99962 * 19 17 15 23 23 C 1.38887 * 119.86270 * 359.71205 * 13 12 11 24 24 C 1.38093 * 119.92815 * 359.97438 * 23 13 12 25 25 C 1.52997 * 109.47323 * 59.99970 * 7 6 5 26 26 C 1.52998 * 109.47068 * 270.00538 * 4 3 2 27 27 H 1.08996 * 109.47412 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46475 * 300.00002 * 1 2 3 29 29 H 1.08997 * 109.46599 * 59.99562 * 1 2 3 30 30 H 1.09003 * 109.47084 * 240.00368 * 2 1 3 31 31 H 1.08996 * 109.47323 * 120.00278 * 2 1 3 32 32 H 1.08997 * 109.46898 * 30.00109 * 4 3 2 33 33 H 1.08997 * 109.47301 * 60.00098 * 5 4 3 34 34 H 1.08999 * 109.46992 * 300.00316 * 5 4 3 35 35 H 1.09000 * 109.47106 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47187 * 60.00390 * 6 5 4 37 37 H 1.09006 * 109.46723 * 299.99646 * 7 6 5 38 38 H 1.00903 * 111.00010 * 31.04563 * 8 7 6 39 39 H 1.09004 * 109.47351 * 299.99678 * 9 8 7 40 40 H 1.08996 * 109.47247 * 60.00173 * 9 8 7 41 41 H 1.07994 * 119.96598 * 359.97438 * 11 10 9 42 42 H 1.07999 * 120.02925 * 180.28229 * 12 11 10 43 43 H 0.96992 * 120.00155 * 180.02562 * 18 17 15 44 44 H 1.08003 * 120.03351 * 179.97438 * 23 13 12 45 45 H 1.07999 * 119.96394 * 180.02562 * 24 23 13 46 46 H 1.08997 * 109.47301 * 60.00026 * 25 7 6 47 47 H 1.08999 * 109.46643 * 180.02562 * 25 7 6 48 48 H 1.09010 * 109.47024 * 299.99856 * 26 4 3 49 49 H 1.09000 * 109.47793 * 59.99388 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8405 2.7458 -0.7217 6 6 5.3657 2.8662 -0.7229 7 6 5.8753 2.9058 0.7192 8 7 7.3397 3.0221 0.7180 9 6 7.8196 3.6410 1.9609 10 6 9.3227 3.7427 1.9234 11 6 10.0968 2.7086 2.4177 12 6 11.4746 2.7964 2.3797 13 6 12.0825 3.9296 1.8553 14 8 13.4365 4.0216 1.8225 15 6 13.9621 5.0949 1.1981 16 1 13.3136 5.8735 0.8246 17 6 15.3352 5.1988 1.0357 18 7 16.1251 4.2500 1.4903 19 14 16.0634 6.6860 0.1712 20 1 16.3511 7.7470 1.1695 21 1 17.3226 6.2942 -0.5116 22 1 15.0956 7.1990 -0.8314 23 6 11.3023 4.9687 1.3650 24 6 9.9252 4.8721 1.3998 25 6 5.4658 1.6201 1.4403 26 6 3.9400 1.5000 1.4417 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8632 0.6016 -0.5147 33 1 3.4083 3.6042 -0.2076 34 1 3.4778 2.7173 -1.7492 35 1 5.6575 3.7820 -1.2371 36 1 5.7976 2.0078 -1.2374 37 1 5.4434 3.7644 1.2336 38 1 7.6611 3.5354 -0.0891 39 1 7.3900 4.6379 2.0599 40 1 7.5183 3.0293 2.8112 41 1 9.6234 1.8299 2.8302 42 1 12.0785 1.9867 2.7617 43 1 17.0856 4.3229 1.3770 44 1 11.7722 5.8514 0.9569 45 1 9.3180 5.6797 1.0183 46 1 5.8976 0.7617 0.9259 47 1 5.8285 1.6487 2.4678 48 1 3.5077 2.3585 1.9559 49 1 3.6482 0.5840 1.9556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000850442868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:40 Heat of formation + Delta-G solvation = -71.369244 kcal Electronic energy + Delta-G solvation = -25817.257648 eV Core-core repulsion = 22129.931647 eV Total energy + Delta-G solvation = -3687.326001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.71798 -39.02363 -37.65931 -36.58447 -34.30043 -32.30578 -31.56421 -31.10341 -30.16508 -29.85116 -27.45379 -25.47863 -24.06448 -23.44450 -22.64303 -21.93926 -21.62577 -20.41349 -19.97623 -17.96947 -17.16877 -17.01063 -16.07676 -15.95960 -15.38977 -14.97353 -14.81016 -14.52544 -14.28094 -14.18706 -13.78663 -13.65097 -13.57411 -13.44729 -12.92567 -12.87346 -12.68044 -12.49080 -12.34202 -12.21984 -11.93186 -11.88951 -11.63883 -11.39389 -11.34537 -11.24034 -11.16435 -10.80562 -10.67726 -10.61677 -10.56154 -10.43652 -10.38893 -9.67867 -9.32333 -8.83102 -8.35005 -8.15028 -7.16889 -6.44526 -4.03442 2.24319 2.30049 3.12525 3.13579 3.18395 3.29654 3.96876 4.16502 4.42685 4.43103 4.65541 4.66714 4.78034 4.90970 4.95100 4.97686 5.03779 5.07343 5.11322 5.20360 5.24519 5.30231 5.31214 5.38470 5.45019 5.49554 5.51889 5.59191 5.69657 5.74237 5.76323 5.79623 5.85320 5.92917 5.94534 5.94852 6.05513 6.18996 6.23763 6.44676 6.72676 6.91905 6.95416 7.04518 7.13682 7.28604 7.37309 7.44924 7.51861 7.84896 8.00550 9.01121 9.71693 10.73532 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.036544 B = 0.001821 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.023358 B =15373.566198 C =15745.529362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.056 3.944 3 O -0.386 6.386 4 C 0.091 3.909 5 C -0.111 4.111 6 C -0.118 4.118 7 C 0.085 3.915 8 N -0.682 5.682 9 C 0.119 3.881 10 C -0.184 4.184 11 C -0.052 4.052 12 C -0.194 4.194 13 C 0.156 3.844 14 O -0.179 6.179 15 C -0.392 4.392 16 H 0.092 0.908 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.941 3.059 20 H -0.273 1.273 21 H -0.277 1.277 22 H -0.268 1.268 23 C -0.235 4.235 24 C -0.066 4.066 25 C -0.104 4.104 26 C -0.139 4.139 27 H 0.069 0.931 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.042 0.958 38 H 0.343 0.657 39 H 0.027 0.973 40 H 0.069 0.931 41 H 0.111 0.889 42 H 0.116 0.884 43 H 0.270 0.730 44 H 0.126 0.874 45 H 0.102 0.898 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.413 -5.194 -3.067 27.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.306 6.306 4 C 0.033 3.967 5 C -0.149 4.149 6 C -0.156 4.156 7 C -0.025 4.025 8 N -0.313 5.313 9 C -0.009 4.009 10 C -0.185 4.185 11 C -0.071 4.071 12 C -0.214 4.214 13 C 0.102 3.898 14 O -0.082 6.082 15 C -0.468 4.468 16 H 0.109 0.891 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.192 1.192 23 C -0.254 4.254 24 C -0.085 4.085 25 C -0.142 4.142 26 C -0.178 4.178 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.060 0.940 38 H 0.161 0.839 39 H 0.045 0.955 40 H 0.088 0.912 41 H 0.129 0.871 42 H 0.134 0.866 43 H 0.080 0.920 44 H 0.143 0.857 45 H 0.120 0.880 46 H 0.088 0.912 47 H 0.084 0.916 48 H 0.087 0.913 49 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -25.989 -5.865 -2.747 26.784 hybrid contribution 0.327 1.468 -0.555 1.603 sum -25.662 -4.397 -3.303 26.244 Atomic orbital electron populations 1.21744 0.93878 1.02166 1.03065 1.22483 0.95461 0.84078 0.99995 1.87905 1.21305 1.26228 1.95117 1.22142 0.80515 0.98365 0.95663 1.21527 0.95481 0.97197 1.00740 1.21681 0.94485 1.02889 0.96583 1.21551 0.88333 0.97157 0.95463 1.60579 1.08440 1.57253 1.05063 1.20658 0.91956 0.96136 0.92179 1.19124 0.93581 0.96685 1.09148 1.20461 0.92340 0.96889 0.97400 1.20227 0.94157 0.98009 1.08989 1.19403 0.84865 0.92943 0.92610 1.83981 1.14135 1.43942 1.66129 1.21322 0.91106 0.98028 1.36370 0.89106 1.25286 0.95081 0.98813 0.97329 1.70038 1.04478 1.32215 1.43021 0.85717 0.78784 0.79817 0.79133 1.19902 1.20249 1.19231 1.21117 0.93619 1.01085 1.09566 1.20584 0.94029 0.96358 0.97518 1.21482 0.93510 0.98191 1.01055 1.22042 0.96346 1.02469 0.96903 0.91202 0.91892 0.91925 0.93494 0.93454 0.92125 0.91177 0.91235 0.91375 0.90806 0.93983 0.83867 0.95532 0.91231 0.87107 0.86593 0.92037 0.85672 0.87972 0.91155 0.91603 0.91304 0.91877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 10.28 37.16 0.38 -0.51 16 2 C 0.06 0.41 6.47 37.16 0.24 0.65 16 3 O -0.39 -3.68 9.99 -35.23 -0.35 -4.03 16 4 C 0.09 0.78 2.61 -26.73 -0.07 0.71 16 5 C -0.11 -0.92 5.57 -26.73 -0.15 -1.07 16 6 C -0.12 -1.02 5.19 -26.73 -0.14 -1.16 16 7 C 0.08 0.84 2.49 -67.71 -0.17 0.67 16 8 N -0.68 -8.27 6.30 -107.99 -0.68 -8.95 16 9 C 0.12 1.58 5.61 -4.97 -0.03 1.56 16 10 C -0.18 -3.10 5.40 -104.57 -0.56 -3.67 16 11 C -0.05 -0.94 9.69 -39.60 -0.38 -1.32 16 12 C -0.19 -4.15 9.99 -39.40 -0.39 -4.55 16 13 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 14 O -0.18 -5.13 9.76 0.03 0.00 -5.13 16 15 C -0.39 -11.00 9.49 30.89 0.29 -10.70 16 16 H 0.09 2.36 5.20 -52.49 -0.27 2.08 16 17 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 18 N -0.86 -25.37 13.67 55.48 0.76 -24.61 16 19 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 20 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 23 C -0.23 -5.09 9.17 -39.39 -0.36 -5.45 16 24 C -0.07 -1.20 9.69 -39.61 -0.38 -1.58 16 25 C -0.10 -0.99 5.43 -26.71 -0.14 -1.13 16 26 C -0.14 -1.19 5.54 -26.71 -0.15 -1.34 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.30 8.08 -51.93 -0.42 -0.11 16 31 H 0.05 0.31 7.87 -51.93 -0.41 -0.09 16 32 H 0.06 0.50 7.79 -51.93 -0.40 0.09 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.43 7.80 -51.93 -0.40 0.03 16 38 H 0.34 4.17 8.34 -39.29 -0.33 3.84 16 39 H 0.03 0.34 8.00 -51.93 -0.42 -0.08 16 40 H 0.07 0.89 7.38 -51.93 -0.38 0.51 16 41 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 42 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16 43 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.13 2.73 5.64 -52.48 -0.30 2.43 16 45 H 0.10 1.58 8.06 -52.49 -0.42 1.15 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 47 H 0.07 0.66 7.45 -51.93 -0.39 0.27 16 48 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 49 H 0.06 0.51 7.87 -51.93 -0.41 0.10 16 LS Contribution 392.51 15.07 5.92 5.92 Total: -1.00 -30.35 392.51 -10.09 -40.44 By element: Atomic # 1 Polarization: 13.57 SS G_CDS: -8.34 Total: 5.24 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: -2.37 Total: -24.40 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.08 Total: -33.55 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: -0.35 Total: -9.16 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.35 -10.09 -40.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850442868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.926 kcal (2) G-P(sol) polarization free energy of solvation -30.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds