Wall clock time and date at job start Tue Mar 31 2020 13:15:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47431 * 2 1 4 4 C 1.42905 * 114.00278 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47231 * 150.00258 * 4 3 2 6 6 C 1.52999 * 109.47024 * 180.02562 * 5 4 3 7 7 C 1.52998 * 109.47166 * 300.00212 * 6 5 4 8 8 N 1.46905 * 109.46896 * 180.02562 * 7 6 5 9 9 C 1.46902 * 110.99762 * 154.99825 * 8 7 6 10 10 C 1.50701 * 109.46725 * 179.97438 * 9 8 7 11 11 C 1.38307 * 119.92751 * 269.72227 * 10 9 8 12 12 C 1.38105 * 120.06147 * 179.73104 * 11 10 9 13 13 C 1.38872 * 119.93430 * 0.56469 * 12 11 10 14 14 O 1.35750 * 120.06955 * 179.68276 * 13 12 11 15 15 C 1.34838 * 116.99807 * 174.49013 * 14 13 12 16 16 H 1.07994 * 119.99916 * 5.06161 * 15 14 13 17 17 C 1.38659 * 119.99657 * 185.05899 * 15 14 13 18 18 N 1.31560 * 120.00104 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 119.99599 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.46912 * 90.00267 * 19 17 15 21 21 H 1.48504 * 109.46679 * 209.99903 * 19 17 15 22 22 H 1.48496 * 109.47497 * 329.99962 * 19 17 15 23 23 C 1.38887 * 119.86270 * 359.71205 * 13 12 11 24 24 C 1.38093 * 119.92815 * 359.97438 * 23 13 12 25 25 C 1.52997 * 109.47323 * 59.99970 * 7 6 5 26 26 C 1.52998 * 109.47068 * 270.00538 * 4 3 2 27 27 H 1.08996 * 109.47412 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46475 * 300.00002 * 1 2 3 29 29 H 1.08997 * 109.46599 * 59.99562 * 1 2 3 30 30 H 1.09003 * 109.47084 * 240.00368 * 2 1 3 31 31 H 1.08996 * 109.47323 * 120.00278 * 2 1 3 32 32 H 1.08997 * 109.46898 * 30.00109 * 4 3 2 33 33 H 1.08997 * 109.47301 * 60.00098 * 5 4 3 34 34 H 1.08999 * 109.46992 * 300.00316 * 5 4 3 35 35 H 1.09000 * 109.47106 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47187 * 60.00390 * 6 5 4 37 37 H 1.09006 * 109.46723 * 299.99646 * 7 6 5 38 38 H 1.00903 * 111.00010 * 31.04563 * 8 7 6 39 39 H 1.09004 * 109.47351 * 299.99678 * 9 8 7 40 40 H 1.08996 * 109.47247 * 60.00173 * 9 8 7 41 41 H 1.07994 * 119.96598 * 359.97438 * 11 10 9 42 42 H 1.07999 * 120.02925 * 180.28229 * 12 11 10 43 43 H 0.96992 * 120.00155 * 180.02562 * 18 17 15 44 44 H 1.08003 * 120.03351 * 179.97438 * 23 13 12 45 45 H 1.07999 * 119.96394 * 180.02562 * 24 23 13 46 46 H 1.08997 * 109.47301 * 60.00026 * 25 7 6 47 47 H 1.08999 * 109.46643 * 180.02562 * 25 7 6 48 48 H 1.09010 * 109.47024 * 299.99856 * 26 4 3 49 49 H 1.09000 * 109.47793 * 59.99388 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4310 1.4601 -0.0006 5 6 3.8405 2.7458 -0.7217 6 6 5.3657 2.8662 -0.7229 7 6 5.8753 2.9058 0.7192 8 7 7.3397 3.0221 0.7180 9 6 7.8196 3.6410 1.9609 10 6 9.3227 3.7427 1.9234 11 6 10.0968 2.7086 2.4177 12 6 11.4746 2.7964 2.3797 13 6 12.0825 3.9296 1.8553 14 8 13.4365 4.0216 1.8225 15 6 13.9621 5.0949 1.1981 16 1 13.3136 5.8735 0.8246 17 6 15.3352 5.1988 1.0357 18 7 16.1251 4.2500 1.4903 19 14 16.0634 6.6860 0.1712 20 1 16.3511 7.7470 1.1695 21 1 17.3226 6.2942 -0.5116 22 1 15.0956 7.1990 -0.8314 23 6 11.3023 4.9687 1.3650 24 6 9.9252 4.8721 1.3998 25 6 5.4658 1.6201 1.4403 26 6 3.9400 1.5000 1.4417 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 3.8632 0.6016 -0.5147 33 1 3.4083 3.6042 -0.2076 34 1 3.4778 2.7173 -1.7492 35 1 5.6575 3.7820 -1.2371 36 1 5.7976 2.0078 -1.2374 37 1 5.4434 3.7644 1.2336 38 1 7.6611 3.5354 -0.0891 39 1 7.3900 4.6379 2.0599 40 1 7.5183 3.0293 2.8112 41 1 9.6234 1.8299 2.8302 42 1 12.0785 1.9867 2.7617 43 1 17.0856 4.3229 1.3770 44 1 11.7722 5.8514 0.9569 45 1 9.3180 5.6797 1.0183 46 1 5.8976 0.7617 0.9259 47 1 5.8285 1.6487 2.4678 48 1 3.5077 2.3585 1.9559 49 1 3.6482 0.5840 1.9556 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000850442868.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:39 Heat of formation + Delta-G solvation = -89.369038 kcal Electronic energy + Delta-G solvation = -25818.038178 eV Core-core repulsion = 22129.931647 eV Total energy + Delta-G solvation = -3688.106531 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.82062 -40.34170 -38.76480 -37.91082 -35.32593 -34.23711 -32.28657 -31.80709 -31.76103 -31.04186 -28.52401 -27.35023 -25.30219 -24.05410 -23.59125 -23.30649 -22.43981 -21.84823 -20.75317 -19.82959 -18.84360 -17.79923 -17.01950 -16.69162 -16.40986 -16.32549 -16.03347 -15.95697 -15.61980 -15.43808 -15.16521 -14.91749 -14.54215 -14.37162 -14.28518 -13.99402 -13.71179 -13.52465 -13.38743 -13.14535 -13.11382 -12.97410 -12.64083 -12.58289 -12.33756 -12.29546 -12.14114 -12.08732 -12.04120 -11.97443 -11.68408 -11.29371 -11.25052 -11.15451 -10.78481 -10.32389 -9.76052 -9.30387 -8.88732 -8.46406 -6.14704 0.62262 0.69462 1.35192 1.44494 1.52819 2.18231 2.68239 2.81163 3.11785 3.46041 3.54102 3.72822 3.76184 4.05739 4.07274 4.13724 4.17677 4.22202 4.26378 4.31403 4.36950 4.41335 4.50396 4.51142 4.54677 4.56925 4.63706 4.65582 4.79036 4.81676 4.84222 4.99740 5.03096 5.06387 5.10383 5.14508 5.16514 5.22925 5.24168 5.27949 5.32965 5.34704 5.45489 5.59973 5.72924 5.83536 6.03834 6.16961 6.27851 6.35246 6.53131 6.98269 7.79721 8.76891 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.036544 B = 0.001821 C = 0.001778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.023358 B =15373.566198 C =15745.529362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.049 3.951 3 O -0.404 6.404 4 C 0.089 3.911 5 C -0.107 4.107 6 C -0.112 4.112 7 C 0.088 3.912 8 N -0.689 5.689 9 C 0.123 3.877 10 C -0.156 4.156 11 C -0.048 4.048 12 C -0.207 4.207 13 C 0.113 3.887 14 O -0.234 6.234 15 C -0.414 4.414 16 H 0.102 0.898 17 C -0.023 4.023 18 N -0.921 5.921 19 Si 1.019 2.981 20 H -0.263 1.263 21 H -0.271 1.271 22 H -0.253 1.253 23 C -0.243 4.243 24 C -0.062 4.062 25 C -0.100 4.100 26 C -0.133 4.133 27 H 0.087 0.913 28 H 0.057 0.943 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.344 0.656 39 H 0.043 0.957 40 H 0.081 0.919 41 H 0.143 0.857 42 H 0.110 0.890 43 H 0.272 0.728 44 H 0.118 0.882 45 H 0.138 0.862 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.064 0.936 49 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.610 -4.562 -3.766 30.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 O -0.324 6.324 4 C 0.032 3.968 5 C -0.146 4.146 6 C -0.150 4.150 7 C -0.022 4.022 8 N -0.320 5.320 9 C -0.005 4.005 10 C -0.157 4.157 11 C -0.066 4.066 12 C -0.226 4.226 13 C 0.063 3.937 14 O -0.141 6.141 15 C -0.490 4.490 16 H 0.119 0.881 17 C -0.221 4.221 18 N -0.559 5.559 19 Si 0.838 3.162 20 H -0.188 1.188 21 H -0.196 1.196 22 H -0.177 1.177 23 C -0.262 4.262 24 C -0.081 4.081 25 C -0.139 4.139 26 C -0.171 4.171 27 H 0.106 0.894 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.063 0.937 38 H 0.162 0.838 39 H 0.061 0.939 40 H 0.100 0.900 41 H 0.160 0.840 42 H 0.129 0.871 43 H 0.081 0.919 44 H 0.135 0.865 45 H 0.156 0.844 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.083 0.917 49 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -29.260 -5.243 -3.441 29.925 hybrid contribution 0.926 1.135 -0.282 1.492 sum -28.334 -4.109 -3.723 28.872 Atomic orbital electron populations 1.21758 0.93041 1.03222 1.02643 1.22661 0.96231 0.83260 1.00545 1.87885 1.21663 1.27615 1.95206 1.22170 0.80367 0.98608 0.95665 1.21486 0.95156 0.96971 1.00939 1.21620 0.94564 1.03119 0.95733 1.21572 0.86808 0.97392 0.96381 1.60521 1.09989 1.57084 1.04445 1.20640 0.88888 0.97617 0.93349 1.19627 0.95860 0.95027 1.05216 1.20837 0.90853 0.98345 0.96576 1.20467 0.95808 0.97263 1.09059 1.19950 0.84061 0.95001 0.94716 1.83944 1.16462 1.45047 1.68661 1.21824 0.91944 0.98489 1.36736 0.88111 1.26595 0.95164 1.02312 0.98002 1.70187 1.04835 1.35107 1.45802 0.84582 0.77964 0.75489 0.78138 1.18799 1.19611 1.17657 1.21229 0.95207 1.00197 1.09582 1.20944 0.92632 0.97806 0.96682 1.21436 0.94005 0.97738 1.00678 1.21969 0.95639 1.02524 0.96979 0.89446 0.92353 0.92273 0.92854 0.92965 0.91828 0.91467 0.90846 0.90737 0.91074 0.93696 0.83755 0.93917 0.90032 0.83951 0.87147 0.91879 0.86455 0.84407 0.91707 0.91890 0.91686 0.91446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 71.98 0.74 -0.77 16 2 C 0.05 0.62 6.47 71.98 0.47 1.09 16 3 O -0.40 -6.97 9.99 -148.98 -1.49 -8.46 16 4 C 0.09 1.35 2.61 30.59 0.08 1.43 16 5 C -0.11 -1.53 5.57 30.59 0.17 -1.36 16 6 C -0.11 -1.62 5.19 30.59 0.16 -1.46 16 7 C 0.09 1.45 2.49 44.91 0.11 1.57 16 8 N -0.69 -14.16 6.30 -495.56 -3.12 -17.29 16 9 C 0.12 2.76 5.61 85.56 0.48 3.24 16 10 C -0.16 -4.77 5.40 -19.83 -0.11 -4.87 16 11 C -0.05 -1.62 9.69 22.25 0.22 -1.40 16 12 C -0.21 -8.96 9.99 22.39 0.22 -8.74 16 13 C 0.11 5.70 6.65 22.58 0.15 5.85 16 14 O -0.23 -14.33 9.76 -22.82 -0.22 -14.55 16 15 C -0.41 -24.34 9.49 67.92 0.64 -23.70 16 16 H 0.10 5.43 5.20 -2.91 -0.02 5.41 16 17 C -0.02 -1.34 5.49 84.83 0.47 -0.87 16 18 N -0.92 -57.03 13.67 21.61 0.30 -56.73 16 19 Si 1.02 43.07 29.55 68.60 2.03 45.10 16 20 H -0.26 -10.55 7.11 99.48 0.71 -9.84 16 21 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 22 H -0.25 -9.91 7.11 99.48 0.71 -9.20 16 23 C -0.24 -10.58 9.17 22.39 0.21 -10.37 16 24 C -0.06 -2.09 9.69 22.25 0.22 -1.88 16 25 C -0.10 -1.62 5.43 30.61 0.17 -1.46 16 26 C -0.13 -1.96 5.54 30.61 0.17 -1.79 16 27 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.05 0.59 8.08 -2.39 -0.02 0.58 16 31 H 0.05 0.60 7.87 -2.39 -0.02 0.58 16 32 H 0.06 0.91 7.79 -2.39 -0.02 0.89 16 33 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.07 1.00 8.12 -2.39 -0.02 0.98 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.05 0.75 7.80 -2.38 -0.02 0.74 16 38 H 0.34 7.09 8.34 -89.69 -0.75 6.34 16 39 H 0.04 0.87 8.00 -2.38 -0.02 0.85 16 40 H 0.08 1.71 7.38 -2.39 -0.02 1.69 16 41 H 0.14 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.11 4.78 8.06 -2.91 -0.02 4.75 16 43 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 44 H 0.12 5.20 5.64 -2.91 -0.02 5.19 16 45 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 46 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 47 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 48 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 49 H 0.07 0.94 7.87 -2.39 -0.02 0.92 16 Total: -1.00 -69.93 392.51 2.22 -67.71 By element: Atomic # 1 Polarization: 29.56 SS G_CDS: 0.18 Total: 29.73 kcal Atomic # 6 Polarization: -50.06 SS G_CDS: 4.56 Total: -45.50 kcal Atomic # 7 Polarization: -71.19 SS G_CDS: -2.83 Total: -74.02 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: -1.71 Total: -23.01 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -69.93 2.22 -67.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000850442868.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.663 kcal (2) G-P(sol) polarization free energy of solvation -69.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds