Wall clock time and date at job start Tue Mar 31 2020 13:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42902 * 109.47333 * 2 1 4 4 C 1.42897 * 114.00596 * 180.02562 * 3 2 1 5 5 H 1.08997 * 112.84556 * 18.80021 * 4 3 2 6 6 C 1.53784 * 113.61366 * 247.50264 * 4 3 2 7 7 C 1.53782 * 87.07742 * 220.01686 * 6 4 3 8 8 H 1.08997 * 113.68759 * 270.86722 * 7 6 4 9 9 N 1.46900 * 113.61343 * 139.98441 * 7 6 4 10 10 C 1.46898 * 111.00182 * 107.50008 * 9 7 6 11 11 H 1.08993 * 109.47084 * 324.99163 * 10 9 7 12 12 C 1.53006 * 109.47006 * 204.99462 * 10 9 7 13 13 C 1.50699 * 109.46610 * 65.00087 * 12 10 9 14 14 H 1.07998 * 120.00857 * 359.97438 * 13 12 10 15 15 C 1.37886 * 119.99708 * 180.02562 * 13 12 10 16 16 N 1.31512 * 119.99820 * 359.97438 * 15 13 12 17 17 Si 1.86794 * 119.99904 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47416 * 59.99788 * 17 15 13 19 19 H 1.48506 * 109.47130 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47293 * 299.99636 * 17 15 13 21 21 C 1.50699 * 109.47309 * 84.99732 * 10 9 7 22 22 C 1.38237 * 119.99898 * 39.72714 * 21 10 9 23 23 C 1.38235 * 119.99755 * 179.76881 * 22 21 10 24 24 C 1.38232 * 120.00369 * 0.50271 * 23 22 21 25 25 C 1.38242 * 119.99690 * 359.74637 * 24 23 22 26 26 C 1.38231 * 119.99724 * 0.02562 * 25 24 23 27 27 C 1.53773 * 113.61633 * 150.00132 * 4 3 2 28 28 H 1.08994 * 113.61608 * 25.43497 * 27 4 3 29 29 O 1.42899 * 113.61455 * 254.52648 * 27 4 3 30 30 C 1.42902 * 113.99982 * 112.50292 * 29 27 4 31 31 H 1.09001 * 109.47019 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47230 * 299.99827 * 1 2 3 33 33 H 1.08998 * 109.47106 * 60.00020 * 1 2 3 34 34 H 1.08998 * 109.47539 * 240.00549 * 2 1 3 35 35 H 1.08998 * 109.47106 * 119.99980 * 2 1 3 36 36 H 1.09000 * 113.61718 * 105.46694 * 6 4 3 37 37 H 1.09000 * 113.61394 * 334.56077 * 6 4 3 38 38 H 1.00896 * 111.00379 * 343.53807 * 9 7 6 39 39 H 1.08992 * 109.47046 * 184.99823 * 12 10 9 40 40 H 1.08997 * 109.47395 * 305.00364 * 12 10 9 41 41 H 0.97002 * 119.99655 * 180.02562 * 16 15 13 42 42 H 1.07994 * 120.00259 * 359.97438 * 22 21 10 43 43 H 1.08003 * 119.99939 * 180.23090 * 23 22 21 44 44 H 1.08000 * 120.00610 * 179.73022 * 24 23 22 45 45 H 1.07997 * 119.99788 * 179.97438 * 25 24 23 46 46 H 1.08009 * 120.00057 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.46682 * 60.00082 * 30 29 27 48 48 H 1.08994 * 109.47148 * 180.02562 * 30 29 27 49 49 H 1.09004 * 109.47237 * 300.00381 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9277 0.5458 -0.3246 6 6 4.0029 2.0462 1.3011 7 6 4.9899 2.8314 0.4212 8 1 5.9146 2.2933 0.2129 9 7 5.2218 4.2073 0.8808 10 6 6.5583 4.3458 1.4746 11 1 6.8200 3.4266 1.9987 12 6 6.5588 5.5140 2.4627 13 6 5.6412 5.1973 3.6154 14 1 5.1104 4.2571 3.6406 15 6 5.4784 6.1084 4.6374 16 7 6.1244 7.2536 4.6065 17 14 4.3405 5.7162 6.0659 18 1 4.8135 4.4874 6.7526 19 1 4.3401 6.8505 7.0244 20 1 2.9628 5.4991 5.5561 21 6 7.5669 4.6081 0.3861 22 6 7.2465 5.4459 -0.6657 23 6 8.1734 5.6903 -1.6617 24 6 9.4170 5.0888 -1.6114 25 6 9.7355 4.2469 -0.5622 26 6 8.8103 4.0062 0.4362 27 6 3.9483 2.7254 -0.7051 28 1 3.2298 3.5450 -0.7138 29 8 4.5189 2.4720 -1.9904 30 6 3.7662 3.0139 -3.0776 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 1.8934 -0.5137 -0.8900 35 1 1.8933 -0.5138 0.8900 36 1 4.4822 1.3046 1.9402 37 1 3.2993 2.6801 1.8407 38 1 4.5059 4.4972 1.5299 39 1 7.5701 5.6733 2.8365 40 1 6.2113 6.4161 1.9590 41 1 6.0101 7.8944 5.3257 42 1 6.2733 5.9121 -0.7077 43 1 7.9245 6.3478 -2.4816 44 1 10.1396 5.2763 -2.3918 45 1 10.7069 3.7766 -0.5230 46 1 9.0590 3.3481 1.2558 47 1 3.6935 4.0957 -2.9655 48 1 4.2648 2.7784 -4.0178 49 1 2.7660 2.5807 -3.0786 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000893193865.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:31 Heat of formation + Delta-G solvation = -68.487509 kcal Electronic energy + Delta-G solvation = -27582.674573 eV Core-core repulsion = 23895.473533 eV Total energy + Delta-G solvation = -3687.201040 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.11979 -40.04123 -38.22193 -37.57783 -35.97222 -34.40466 -32.08817 -31.63668 -31.07874 -30.16830 -27.91321 -26.50079 -25.43430 -24.25137 -23.67557 -23.58066 -23.15923 -21.17505 -20.77445 -18.59924 -18.30544 -17.66313 -17.41901 -16.72172 -16.61781 -16.46472 -16.25793 -15.98622 -15.85447 -15.21834 -15.05357 -14.59227 -14.46962 -14.06681 -14.04798 -13.85563 -13.81941 -13.49536 -13.30329 -13.27971 -13.06927 -12.72024 -12.70404 -12.60934 -12.42076 -12.26546 -12.10285 -12.05821 -11.92964 -11.73057 -11.68806 -11.42677 -11.15242 -10.82227 -10.56367 -10.23491 -9.65477 -9.40228 -9.18662 -8.18049 -6.29230 0.62369 0.68875 1.40770 1.42292 1.49776 2.40571 2.44877 3.04685 3.11984 3.14710 3.44459 3.55442 3.59622 3.87043 3.88614 4.11930 4.17857 4.20233 4.26073 4.30788 4.39676 4.40779 4.44041 4.48767 4.57531 4.61065 4.62837 4.75800 4.81235 4.82563 4.83529 4.87107 4.90323 4.99891 5.03014 5.08691 5.24914 5.26653 5.32707 5.44700 5.52917 5.70094 5.75222 5.82370 5.89981 6.15295 6.18357 6.29371 6.35830 6.42048 6.60530 6.85203 7.39663 8.93083 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007321 B = 0.005374 C = 0.003341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3823.674642 B = 5208.669506 C = 8378.450843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.047 3.953 3 O -0.392 6.392 4 C 0.063 3.937 5 H 0.104 0.896 6 C -0.177 4.177 7 C 0.079 3.921 8 H 0.094 0.906 9 N -0.665 5.665 10 C 0.145 3.855 11 H 0.035 0.965 12 C 0.042 3.958 13 C -0.532 4.532 14 H 0.062 0.938 15 C 0.008 3.992 16 N -0.929 5.929 17 Si 0.957 3.043 18 H -0.269 1.269 19 H -0.287 1.287 20 H -0.266 1.266 21 C -0.077 4.077 22 C -0.102 4.102 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.126 4.126 26 C -0.140 4.140 27 C 0.083 3.917 28 H 0.088 0.912 29 O -0.389 6.389 30 C 0.029 3.971 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.351 0.649 39 H -0.010 1.010 40 H -0.003 1.003 41 H 0.262 0.738 42 H 0.111 0.889 43 H 0.136 0.864 44 H 0.147 0.853 45 H 0.143 0.857 46 H 0.118 0.882 47 H 0.040 0.960 48 H 0.099 0.901 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.943 -13.407 -14.197 19.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.029 4.029 3 O -0.312 6.312 4 C 0.004 3.996 5 H 0.122 0.878 6 C -0.217 4.217 7 C -0.032 4.032 8 H 0.112 0.888 9 N -0.297 5.297 10 C 0.036 3.964 11 H 0.053 0.947 12 C 0.004 3.996 13 C -0.570 4.570 14 H 0.081 0.919 15 C -0.190 4.190 16 N -0.569 5.569 17 Si 0.782 3.218 18 H -0.194 1.194 19 H -0.213 1.213 20 H -0.191 1.191 21 C -0.078 4.078 22 C -0.120 4.120 23 C -0.150 4.150 24 C -0.150 4.150 25 C -0.144 4.144 26 C -0.158 4.158 27 C 0.024 3.976 28 H 0.105 0.895 29 O -0.308 6.308 30 C -0.067 4.067 31 H 0.110 0.890 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.173 0.827 39 H 0.009 0.991 40 H 0.015 0.985 41 H 0.071 0.929 42 H 0.129 0.871 43 H 0.154 0.846 44 H 0.164 0.836 45 H 0.161 0.839 46 H 0.136 0.864 47 H 0.059 0.941 48 H 0.117 0.883 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.690 -12.946 -14.738 19.960 hybrid contribution -0.705 -0.136 1.969 2.096 sum -4.394 -13.083 -12.769 18.802 Atomic orbital electron populations 1.21763 0.92794 1.03418 1.02597 1.22734 0.96435 0.82968 1.00739 1.87923 1.20490 1.28141 1.94619 1.24061 0.81211 0.98798 0.95566 0.87824 1.23873 0.99264 1.01171 0.97344 1.22928 0.97044 0.89020 0.94218 0.88776 1.60252 1.03960 1.20986 1.44472 1.20301 0.87602 0.97583 0.90933 0.94655 1.19006 0.95192 0.92818 0.92538 1.21445 1.26631 1.02845 1.06054 0.91939 1.25845 0.97377 0.94770 1.01016 1.70099 1.43708 1.08993 1.34110 0.85617 0.79598 0.77674 0.78862 1.19433 1.21274 1.19087 1.20105 0.94935 0.96952 0.95764 1.20993 0.99400 0.97535 0.94071 1.21403 0.94155 1.00442 0.98971 1.21396 0.96957 0.97513 0.99088 1.21332 0.99638 0.99118 0.94297 1.21211 0.93875 1.01049 0.99689 1.24176 0.94766 0.96101 0.82596 0.89452 1.87875 1.50803 1.77528 1.14594 1.22896 0.96198 0.97809 0.89766 0.88967 0.92612 0.92192 0.92414 0.92845 0.89750 0.89682 0.82736 0.99149 0.98452 0.92881 0.87117 0.84586 0.83570 0.83917 0.86414 0.94092 0.88255 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 10.28 71.98 0.74 -1.64 16 2 C 0.05 0.92 6.50 71.98 0.47 1.38 16 3 O -0.39 -10.33 10.35 -148.98 -1.54 -11.88 16 4 C 0.06 1.64 4.14 31.12 0.13 1.77 16 5 H 0.10 2.43 7.87 -2.39 -0.02 2.42 16 6 C -0.18 -5.13 7.53 31.12 0.23 -4.90 16 7 C 0.08 2.55 3.74 45.44 0.17 2.72 16 8 H 0.09 3.13 7.81 -2.39 -0.02 3.12 16 9 N -0.66 -25.32 5.66 -470.62 -2.66 -27.98 16 10 C 0.15 6.11 2.05 44.17 0.09 6.20 16 11 H 0.04 1.50 7.70 -2.39 -0.02 1.49 16 12 C 0.04 2.19 4.55 29.85 0.14 2.32 16 13 C -0.53 -28.88 8.12 25.60 0.21 -28.67 16 14 H 0.06 3.21 7.49 -2.91 -0.02 3.19 16 15 C 0.01 0.47 5.46 84.66 0.46 0.94 16 16 N -0.93 -56.01 13.29 21.45 0.28 -55.72 16 17 Si 0.96 43.54 29.54 68.60 2.03 45.56 16 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 21 C -0.08 -2.97 4.78 -19.87 -0.09 -3.06 16 22 C -0.10 -3.73 9.33 22.27 0.21 -3.53 16 23 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 24 C -0.13 -3.54 10.05 22.27 0.22 -3.32 16 25 C -0.13 -3.59 10.05 22.27 0.22 -3.36 16 26 C -0.14 -4.80 9.67 22.27 0.22 -4.59 16 27 C 0.08 2.44 3.94 31.12 0.12 2.56 16 28 H 0.09 2.73 7.87 -2.39 -0.02 2.71 16 29 O -0.39 -11.34 10.71 -148.98 -1.60 -12.93 16 30 C 0.03 0.66 10.85 113.37 1.23 1.89 16 31 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 36 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.08 2.69 7.82 -2.39 -0.02 2.68 16 38 H 0.35 14.47 6.67 -89.70 -0.60 13.87 16 39 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 40 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 41 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 42 H 0.11 4.30 7.71 -2.91 -0.02 4.27 16 43 H 0.14 3.36 8.06 -2.91 -0.02 3.33 16 44 H 0.15 2.88 8.06 -2.91 -0.02 2.86 16 45 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 46 H 0.12 3.83 8.04 -2.91 -0.02 3.80 16 47 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 48 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -65.07 402.95 1.81 -63.27 By element: Atomic # 1 Polarization: 36.42 SS G_CDS: 0.31 Total: 36.72 kcal Atomic # 6 Polarization: -42.03 SS G_CDS: 4.99 Total: -37.04 kcal Atomic # 7 Polarization: -81.33 SS G_CDS: -2.38 Total: -83.71 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -3.14 Total: -24.81 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.07 1.81 -63.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893193865.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.219 kcal (2) G-P(sol) polarization free energy of solvation -65.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds