Wall clock time and date at job start Tue Mar 31 2020 12:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 5 5 C 1.46897 * 111.00172 * 84.99810 * 4 2 1 6 6 H 1.08996 * 109.47053 * 35.00006 * 5 4 2 7 7 C 1.52994 * 109.47139 * 155.00538 * 5 4 2 8 8 C 1.50705 * 109.47190 * 294.99607 * 7 5 4 9 9 H 1.08009 * 119.99663 * 0.02562 * 8 7 5 10 10 C 1.37872 * 120.00302 * 179.97438 * 8 7 5 11 11 N 1.31509 * 120.00097 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00057 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47216 * 89.99826 * 12 10 8 14 14 H 1.48501 * 109.47295 * 210.00134 * 12 10 8 15 15 H 1.48501 * 109.46760 * 330.00325 * 12 10 8 16 16 C 1.50707 * 109.46763 * 275.00291 * 5 4 2 17 17 C 1.38237 * 120.00169 * 319.72251 * 16 5 4 18 18 C 1.38228 * 120.00039 * 179.81322 * 17 16 5 19 19 C 1.38240 * 119.99795 * 0.39706 * 18 17 16 20 20 C 1.38236 * 120.00090 * 359.86196 * 19 18 17 21 21 C 1.38234 * 120.00056 * 359.95012 * 20 19 18 22 22 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 23 23 O 1.20833 * 120.00046 * 119.99902 * 22 2 1 24 24 O 1.34228 * 120.00167 * 300.00387 * 22 2 1 25 25 C 1.45196 * 117.00058 * 179.97438 * 24 22 2 26 26 C 1.53002 * 109.47248 * 59.99886 * 25 24 22 27 27 C 1.53003 * 109.47083 * 179.97438 * 25 24 22 28 28 C 1.52996 * 109.47313 * 299.99598 * 25 24 22 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.00899 * 110.99467 * 321.04346 * 4 2 1 33 33 H 1.08998 * 109.47730 * 54.99879 * 7 5 4 34 34 H 1.09004 * 109.47160 * 175.00248 * 7 5 4 35 35 H 0.97001 * 120.00489 * 180.02562 * 11 10 8 36 36 H 1.07998 * 119.99516 * 0.02562 * 17 16 5 37 37 H 1.07993 * 120.00300 * 180.23430 * 18 17 16 38 38 H 1.08005 * 119.99815 * 179.83511 * 19 18 17 39 39 H 1.08000 * 119.99869 * 179.97438 * 20 19 18 40 40 H 1.07999 * 119.99689 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.46990 * 60.00215 * 26 25 24 42 42 H 1.08999 * 109.47050 * 179.97438 * 26 25 24 43 43 H 1.08994 * 109.46937 * 300.00287 * 26 25 24 44 44 H 1.09006 * 109.47025 * 60.00100 * 27 25 24 45 45 H 1.08999 * 109.47422 * 179.97438 * 27 25 24 46 46 H 1.08998 * 109.47053 * 299.99999 * 27 25 24 47 47 H 1.09003 * 109.46664 * 60.00429 * 28 25 24 48 48 H 1.09005 * 109.47265 * 179.97438 * 28 25 24 49 49 H 1.08995 * 109.47642 * 300.00311 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6924 -1.1995 5 6 2.0825 0.2227 -2.3469 6 1 2.3648 1.2177 -2.0030 7 6 3.1221 -0.2850 -3.3480 8 6 4.4913 -0.2322 -2.7206 9 1 4.6082 0.1272 -1.7088 10 6 5.5946 -0.6436 -3.4377 11 7 5.4523 -1.0818 -4.6695 12 14 7.2917 -0.5788 -2.6598 13 1 7.5697 -1.8643 -1.9703 14 1 8.3117 -0.3523 -3.7150 15 1 7.3427 0.5319 -1.6753 16 6 0.7323 0.2859 -3.0134 17 6 -0.0184 -0.8650 -3.1649 18 6 -1.2584 -0.8063 -3.7727 19 6 -1.7444 0.4019 -4.2365 20 6 -0.9914 1.5519 -4.0899 21 6 0.2470 1.4939 -3.4785 22 6 2.0324 -0.7104 1.2304 23 8 2.7271 -1.6928 1.1195 24 8 1.7081 -0.2519 2.4496 25 6 2.2269 -0.9865 3.5895 26 6 3.7562 -0.9860 3.5435 27 6 1.7559 -0.3193 4.8834 28 6 1.7157 -2.4278 3.5431 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.4496 -1.4978 -1.4101 33 1 2.8886 -1.3132 -3.6244 34 1 3.1061 0.3432 -4.2386 35 1 6.2284 -1.3716 -5.1740 36 1 0.3627 -1.8093 -2.8052 37 1 -1.8465 -1.7048 -3.8877 38 1 -2.7121 0.4473 -4.7139 39 1 -1.3709 2.4957 -4.4526 40 1 0.8351 2.3924 -3.3636 41 1 4.1204 0.0408 3.5767 42 1 4.1456 -1.5371 4.3995 43 1 4.0921 -1.4610 2.6218 44 1 0.6663 -0.3193 4.9164 45 1 2.1449 -0.8709 5.7392 46 1 2.1204 0.7074 4.9162 47 1 2.0516 -2.9028 2.6213 48 1 2.1055 -2.9793 4.3986 49 1 0.6262 -2.4282 3.5759 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893194687.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:09:36 Heat of formation + Delta-G solvation = -64.554515 kcal Electronic energy + Delta-G solvation = -27952.909490 eV Core-core repulsion = 24265.878998 eV Total energy + Delta-G solvation = -3687.030492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.62492 -39.37889 -37.18695 -35.94247 -34.04855 -33.11737 -31.79901 -30.65110 -29.37526 -27.74335 -27.45906 -27.37444 -24.88493 -24.18972 -22.44200 -21.88702 -21.13918 -19.84310 -19.20065 -17.27949 -16.60575 -16.34009 -16.03803 -15.75852 -15.08737 -14.90548 -14.67799 -14.29091 -14.24663 -13.87077 -13.79103 -13.49598 -13.09123 -12.87731 -12.69630 -12.53029 -12.46614 -12.20699 -12.14284 -11.93285 -11.88037 -11.86466 -11.59043 -11.31347 -11.16303 -11.04192 -11.00061 -10.80580 -10.65936 -10.51077 -10.24082 -10.17267 -9.71925 -9.50124 -9.00613 -8.65749 -8.24904 -8.21299 -7.83072 -5.85655 -3.83474 1.65529 1.66639 2.63326 2.80481 3.43193 3.48795 3.52373 4.07240 4.59874 4.65110 4.70294 4.73052 4.83482 4.90745 5.11856 5.13534 5.18987 5.24737 5.27820 5.39871 5.41542 5.49257 5.51942 5.62295 5.67827 5.73144 5.76276 5.79052 5.83992 5.84585 5.89235 5.94018 6.03385 6.16530 6.25703 6.26582 6.32414 6.37488 6.71173 6.73195 6.74373 6.79467 6.92474 7.28018 7.39121 7.61868 7.89419 7.94556 8.13919 8.26544 8.56648 9.20694 9.77941 11.26190 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.007675 B = 0.005523 C = 0.003450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3647.346167 B = 5068.208005 C = 8113.437167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.096 3.904 3 H 0.110 0.890 4 N -0.639 5.639 5 C 0.133 3.867 6 H 0.078 0.922 7 C 0.042 3.958 8 C -0.488 4.488 9 H 0.059 0.941 10 C 0.053 3.947 11 N -0.902 5.902 12 Si 0.890 3.110 13 H -0.282 1.282 14 H -0.290 1.290 15 H -0.276 1.276 16 C -0.090 4.090 17 C -0.118 4.118 18 C -0.118 4.118 19 C -0.136 4.136 20 C -0.120 4.120 21 C -0.117 4.117 22 C 0.463 3.537 23 O -0.474 6.474 24 O -0.359 6.359 25 C 0.117 3.883 26 C -0.184 4.184 27 C -0.139 4.139 28 C -0.182 4.182 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.342 0.658 33 H 0.020 0.980 34 H 0.022 0.978 35 H 0.257 0.743 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.114 0.886 39 H 0.116 0.884 40 H 0.120 0.880 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.088 0.912 44 H 0.064 0.936 45 H 0.074 0.926 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.067 0.933 49 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.364 3.004 12.683 19.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.016 4.016 3 H 0.128 0.872 4 N -0.270 5.270 5 C 0.024 3.976 6 H 0.096 0.904 7 C 0.005 3.995 8 C -0.526 4.526 9 H 0.077 0.923 10 C -0.147 4.147 11 N -0.543 5.543 12 Si 0.718 3.282 13 H -0.208 1.208 14 H -0.216 1.216 15 H -0.201 1.201 16 C -0.092 4.092 17 C -0.136 4.136 18 C -0.136 4.136 19 C -0.154 4.154 20 C -0.138 4.138 21 C -0.136 4.136 22 C 0.304 3.696 23 O -0.358 6.358 24 O -0.277 6.277 25 C 0.081 3.919 26 C -0.242 4.242 27 C -0.196 4.196 28 C -0.239 4.239 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.164 0.836 33 H 0.039 0.961 34 H 0.040 0.960 35 H 0.067 0.933 36 H 0.138 0.862 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.134 0.866 40 H 0.138 0.862 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.093 0.907 46 H 0.084 0.916 47 H 0.104 0.896 48 H 0.086 0.914 49 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.339 2.677 12.718 18.624 hybrid contribution 0.131 -0.099 0.133 0.211 sum -13.208 2.578 12.851 18.607 Atomic orbital electron populations 1.22545 0.94934 1.02719 1.03559 1.21155 0.93806 0.98482 0.88174 0.87202 1.60225 1.56372 1.08694 1.01749 1.21064 0.90198 0.96082 0.90284 0.90418 1.19101 0.91709 0.96615 0.92061 1.21073 0.90894 1.41312 0.99355 0.92319 1.24957 0.98932 0.95915 0.94870 1.69961 1.29845 1.44790 1.09724 0.86630 0.84467 0.78341 0.78716 1.20849 1.21644 1.20130 1.21125 0.97246 0.93082 0.97723 1.20963 0.94529 0.98136 1.00003 1.21049 0.96122 0.97549 0.98913 1.21016 0.99889 0.93053 1.01449 1.21079 0.95075 0.98079 0.99595 1.21072 0.95715 0.97706 0.99087 1.23753 0.78087 0.83588 0.84189 1.90589 1.33468 1.25106 1.86614 1.86531 1.70179 1.56108 1.14888 1.22071 0.94090 0.91558 0.84182 1.22498 0.94026 1.02924 1.04712 1.21831 1.02076 1.01350 0.94329 1.22477 1.01266 0.95556 1.04605 0.91466 0.92344 0.90660 0.83617 0.96119 0.96007 0.93321 0.86238 0.86623 0.86809 0.86640 0.86176 0.92092 0.91481 0.89304 0.91730 0.90693 0.91593 0.89574 0.91428 0.92309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.24 8.55 37.16 0.32 -1.92 16 2 C 0.10 1.48 3.10 -68.86 -0.21 1.26 16 3 H 0.11 1.65 7.43 -51.93 -0.39 1.26 16 4 N -0.64 -11.77 5.24 -102.17 -0.54 -12.31 16 5 C 0.13 2.55 2.17 -68.87 -0.15 2.40 16 6 H 0.08 1.48 7.29 -51.93 -0.38 1.10 16 7 C 0.04 1.06 4.63 -27.88 -0.13 0.93 16 8 C -0.49 -13.71 8.84 -34.44 -0.30 -14.01 16 9 H 0.06 1.66 7.74 -52.48 -0.41 1.25 16 10 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 11 N -0.90 -27.47 13.29 55.43 0.74 -26.73 16 12 Si 0.89 22.60 29.54 -169.99 -5.02 17.58 16 13 H -0.28 -7.22 7.11 56.52 0.40 -6.81 16 14 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 15 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 16 C -0.09 -1.48 2.92 -104.62 -0.31 -1.78 16 17 C -0.12 -1.81 8.43 -39.59 -0.33 -2.14 16 18 C -0.12 -1.58 10.05 -39.58 -0.40 -1.98 16 19 C -0.14 -1.72 10.05 -39.58 -0.40 -2.11 16 20 C -0.12 -1.57 10.05 -39.58 -0.40 -1.97 16 21 C -0.12 -1.75 9.66 -39.58 -0.38 -2.13 16 22 C 0.46 7.60 6.64 36.00 0.24 7.84 16 23 O -0.47 -9.13 11.93 -18.76 -0.22 -9.35 16 24 O -0.36 -5.14 9.79 -39.25 -0.38 -5.52 16 25 C 0.12 1.45 1.13 -90.62 -0.10 1.34 16 26 C -0.18 -2.41 8.37 37.16 0.31 -2.09 16 27 C -0.14 -1.27 8.85 37.16 0.33 -0.94 16 28 C -0.18 -2.16 8.37 37.16 0.31 -1.85 16 29 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 30 H 0.06 0.72 8.13 -51.93 -0.42 0.30 16 31 H 0.07 0.97 5.94 -51.93 -0.31 0.66 16 32 H 0.34 6.05 6.10 -39.29 -0.24 5.81 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.12 1.83 6.53 -52.49 -0.34 1.48 16 37 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 38 H 0.11 1.16 8.06 -52.48 -0.42 0.73 16 39 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.12 1.68 8.04 -52.49 -0.42 1.25 16 41 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.09 1.45 5.89 -51.93 -0.31 1.14 16 44 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.09 1.25 5.89 -51.93 -0.31 0.95 16 48 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 391.21 15.07 5.90 5.90 Total: -1.00 -32.03 391.21 -9.38 -41.41 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: -8.15 Total: 6.75 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.70 Total: -17.72 kcal Atomic # 7 Polarization: -39.24 SS G_CDS: 0.20 Total: -39.04 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: -0.61 Total: -14.88 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -32.03 -9.38 -41.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893194687.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.140 kcal (2) G-P(sol) polarization free energy of solvation -32.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds