Wall clock time and date at job start Tue Mar 31 2020 13:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47135 * 2 1 4 4 C 1.34224 * 117.00151 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00019 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00346 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.47463 * 205.00131 * 6 4 3 8 8 N 1.46902 * 109.46996 * 325.00229 * 6 4 3 9 9 C 1.46896 * 110.99965 * 295.90539 * 8 6 4 10 10 C 1.52998 * 109.47173 * 174.41059 * 9 8 6 11 11 H 1.08998 * 109.47436 * 55.00220 * 10 9 8 12 12 C 1.53001 * 109.47095 * 294.99655 * 10 9 8 13 13 C 1.53007 * 109.47368 * 175.00111 * 10 9 8 14 14 C 1.50692 * 109.47290 * 184.99894 * 13 10 9 15 15 H 1.08002 * 120.00053 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00054 * 179.97438 * 14 13 10 17 17 N 1.31519 * 120.00080 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00021 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46769 * 89.99917 * 18 16 14 20 20 H 1.48498 * 109.47012 * 209.99629 * 18 16 14 21 21 H 1.48494 * 109.47171 * 329.99968 * 18 16 14 22 22 C 1.50699 * 109.47201 * 85.00106 * 6 4 3 23 23 C 1.38239 * 119.99866 * 236.12857 * 22 6 4 24 24 C 1.38238 * 119.99593 * 179.79158 * 23 22 6 25 25 C 1.38231 * 119.99910 * 0.43567 * 24 23 22 26 26 C 1.38234 * 120.00384 * 359.81527 * 25 24 23 27 27 C 1.38234 * 120.00058 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47401 * 299.99509 * 1 2 3 30 30 H 1.09000 * 109.47100 * 60.00352 * 1 2 3 31 31 H 1.09001 * 109.47281 * 239.99772 * 2 1 3 32 32 H 1.09007 * 109.46937 * 120.00287 * 2 1 3 33 33 H 1.08997 * 109.47173 * 179.97438 * 7 6 4 34 34 H 1.08992 * 109.47202 * 300.00002 * 7 6 4 35 35 H 1.09008 * 109.46887 * 59.99673 * 7 6 4 36 36 H 1.00900 * 110.99856 * 59.85734 * 8 6 4 37 37 H 1.08996 * 109.47343 * 54.40649 * 9 8 6 38 38 H 1.09004 * 109.47519 * 294.40897 * 9 8 6 39 39 H 1.08993 * 109.47452 * 300.00072 * 12 10 9 40 40 H 1.09002 * 109.47035 * 179.97438 * 12 10 9 41 41 H 1.09003 * 109.46800 * 60.00144 * 12 10 9 42 42 H 1.08999 * 109.46979 * 304.99863 * 13 10 9 43 43 H 1.08998 * 109.47181 * 64.99611 * 13 10 9 44 44 H 0.97000 * 119.99819 * 179.97438 * 17 16 14 45 45 H 1.08001 * 120.00264 * 359.97438 * 23 22 6 46 46 H 1.08004 * 119.99725 * 180.27371 * 24 23 22 47 47 H 1.08007 * 119.99729 * 179.83947 * 25 24 23 48 48 H 1.07997 * 119.99976 * 179.97438 * 26 25 24 49 49 H 1.07994 * 120.00315 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 6 5.3239 2.9091 -0.6080 8 7 3.0597 3.8237 -0.7933 9 6 3.0383 3.4118 -2.2031 10 6 2.0277 4.2677 -2.9692 11 1 2.2639 5.3224 -2.8282 12 6 0.6186 3.9859 -2.4438 13 6 2.0945 3.9249 -4.4589 14 6 1.1892 4.8516 -5.2287 15 1 0.6225 5.6091 -4.7076 16 6 1.0844 4.7326 -6.5983 17 7 0.2939 5.5410 -7.2701 18 14 2.0639 3.4220 -7.4996 19 1 1.2641 2.1733 -7.5789 20 1 2.3795 3.8957 -8.8712 21 1 3.3267 3.1553 -6.7652 22 6 3.9978 3.4484 1.4167 23 6 3.3766 4.6354 1.7578 24 6 3.4437 5.1020 3.0573 25 6 4.1396 4.3863 4.0136 26 6 4.7651 3.2021 3.6713 27 6 4.6944 2.7332 2.3728 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.7403 3.9164 -0.6079 34 1 5.9627 2.2515 -0.0186 35 1 5.2682 2.5394 -1.6319 36 1 2.1261 3.8576 -0.4122 37 1 2.7511 2.3625 -2.2708 38 1 4.0297 3.5456 -2.6359 39 1 0.3824 2.9313 -2.5849 40 1 -0.1013 4.5960 -2.9893 41 1 0.5710 4.2301 -1.3826 42 1 3.1189 4.0408 -4.8128 43 1 1.7725 2.8945 -4.6095 44 1 0.2204 5.4575 -8.2337 45 1 2.8364 5.1966 1.0098 46 1 2.9547 6.0271 3.3248 47 1 4.1942 4.7522 5.0283 48 1 5.3091 2.6432 4.4183 49 1 5.1834 1.8082 2.1053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895893107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:20 Heat of formation + Delta-G solvation = -71.838130 kcal Electronic energy + Delta-G solvation = -27986.645151 eV Core-core repulsion = 24299.298818 eV Total energy + Delta-G solvation = -3687.346334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.17958 -39.31240 -37.41802 -36.75008 -34.91878 -32.43923 -31.79052 -31.24028 -30.76071 -29.07481 -27.34296 -26.22220 -24.71473 -23.32035 -22.72778 -22.09559 -21.80210 -19.86523 -19.19847 -17.82053 -17.45393 -16.90334 -16.67723 -16.51571 -15.57464 -15.24051 -14.70070 -14.38409 -14.18525 -14.04820 -13.90466 -13.73972 -13.41754 -13.03948 -12.93796 -12.83751 -12.46378 -12.41818 -12.27819 -12.10266 -11.99248 -11.96722 -11.74582 -11.62514 -11.23690 -11.13824 -11.02739 -10.86741 -10.65478 -10.59467 -10.36833 -9.84643 -9.73379 -9.49657 -9.07619 -9.06091 -8.95071 -8.52592 -8.50367 -6.02279 -3.99234 1.10116 1.26324 2.08472 2.50877 3.31166 3.39105 3.42731 3.61564 3.99078 4.43020 4.46731 4.53176 4.76213 4.77621 4.83257 4.84909 4.91987 5.00431 5.09583 5.31280 5.33261 5.43403 5.49109 5.55569 5.57495 5.61528 5.63518 5.66010 5.80602 5.84915 5.90246 5.91059 6.01791 6.11732 6.27609 6.29626 6.33361 6.36966 6.43327 6.44207 6.70317 6.82738 6.92787 6.98771 7.07028 7.29290 7.33927 7.48172 7.63037 7.81848 8.56605 9.03302 9.60743 11.11074 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.003555 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.419806 B = 7875.138613 C = 8507.330757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.352 6.352 4 C 0.443 3.557 5 O -0.509 6.509 6 C 0.172 3.828 7 C -0.130 4.130 8 N -0.662 5.662 9 C 0.055 3.945 10 C -0.074 4.074 11 H 0.074 0.926 12 C -0.135 4.135 13 C -0.008 4.008 14 C -0.512 4.512 15 H 0.074 0.926 16 C 0.066 3.934 17 N -0.905 5.905 18 Si 0.876 3.124 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.079 4.079 23 C -0.086 4.086 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.112 4.112 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.354 0.646 37 H 0.026 0.974 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.069 0.931 41 H 0.034 0.966 42 H 0.015 0.985 43 H 0.009 0.991 44 H 0.262 0.738 45 H 0.142 0.858 46 H 0.125 0.875 47 H 0.121 0.879 48 H 0.121 0.879 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.100 -7.194 22.483 24.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.269 6.269 4 C 0.283 3.717 5 O -0.395 6.395 6 C 0.078 3.922 7 C -0.188 4.188 8 N -0.296 5.296 9 C -0.073 4.073 10 C -0.093 4.093 11 H 0.093 0.907 12 C -0.192 4.192 13 C -0.045 4.045 14 C -0.550 4.550 15 H 0.093 0.907 16 C -0.135 4.135 17 N -0.544 5.544 18 Si 0.704 3.296 19 H -0.205 1.205 20 H -0.215 1.215 21 H -0.191 1.191 22 C -0.079 4.079 23 C -0.104 4.104 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.130 4.130 28 H 0.097 0.903 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.176 0.824 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.060 0.940 40 H 0.088 0.912 41 H 0.053 0.947 42 H 0.034 0.966 43 H 0.027 0.973 44 H 0.072 0.928 45 H 0.159 0.841 46 H 0.143 0.857 47 H 0.139 0.861 48 H 0.139 0.861 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.703 -7.009 22.194 24.220 hybrid contribution -0.072 -1.797 -0.608 1.899 sum 6.630 -8.806 21.585 24.237 Atomic orbital electron populations 1.21810 0.92354 1.02941 1.03907 1.23026 0.95654 0.80186 1.02278 1.86523 1.24379 1.32498 1.83450 1.25118 0.80930 0.93843 0.71813 1.90620 1.60462 1.43234 1.45197 1.19843 0.95971 0.83399 0.92956 1.21857 0.91819 1.03760 1.01322 1.60793 1.16676 1.49061 1.03117 1.22355 1.01225 0.97338 0.86373 1.21036 0.92881 0.99275 0.96120 0.90716 1.21745 0.97991 1.01102 0.98363 1.19590 0.97137 0.96638 0.91179 1.21109 1.25184 1.16905 0.91801 0.90744 1.25015 0.95058 0.95742 0.97688 1.69913 1.38467 1.38337 1.07674 0.86831 0.81335 0.82324 0.79098 1.20467 1.21451 1.19070 1.19359 0.99816 0.96410 0.92337 1.21180 0.97710 0.95076 0.96446 1.21216 0.99536 1.00112 0.93177 1.21204 0.97662 0.95239 0.99465 1.21053 1.00308 0.96739 0.95989 1.21063 0.98876 0.99909 0.93194 0.90312 0.91491 0.90940 0.91286 0.91536 0.89808 0.91026 0.91220 0.82364 0.95584 0.90611 0.93975 0.91244 0.94694 0.96634 0.97308 0.92828 0.84078 0.85722 0.86144 0.86071 0.85976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.29 37.16 0.38 -1.03 16 2 C 0.06 0.72 6.19 37.16 0.23 0.95 16 3 O -0.35 -4.86 9.31 -39.24 -0.37 -5.22 16 4 C 0.44 6.39 4.98 36.00 0.18 6.57 16 5 O -0.51 -8.15 15.65 -18.75 -0.29 -8.45 16 6 C 0.17 2.24 0.76 -133.91 -0.10 2.14 16 7 C -0.13 -1.62 7.49 37.16 0.28 -1.35 16 8 N -0.66 -9.08 4.82 -102.33 -0.49 -9.57 16 9 C 0.06 0.89 4.30 -3.83 -0.02 0.87 16 10 C -0.07 -1.41 2.54 -90.62 -0.23 -1.64 16 11 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 12 C -0.13 -2.39 8.78 37.16 0.33 -2.06 16 13 C -0.01 -0.18 3.52 -27.88 -0.10 -0.27 16 14 C -0.51 -14.22 8.96 -34.44 -0.31 -14.53 16 15 H 0.07 2.21 7.30 -52.49 -0.38 1.83 16 16 C 0.07 1.90 5.47 -17.82 -0.10 1.80 16 17 N -0.90 -27.73 13.96 55.43 0.77 -26.96 16 18 Si 0.88 21.76 27.47 -169.99 -4.67 17.09 16 19 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.27 -6.37 6.54 56.52 0.37 -6.00 16 22 C -0.08 -0.94 4.76 -104.62 -0.50 -1.44 16 23 C -0.09 -0.95 9.17 -39.58 -0.36 -1.32 16 24 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 25 C -0.12 -1.05 10.05 -39.59 -0.40 -1.44 16 26 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 27 C -0.11 -1.25 8.80 -39.58 -0.35 -1.60 16 28 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.40 16 32 H 0.07 0.72 8.13 -51.92 -0.42 0.29 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.84 7.33 -51.93 -0.38 0.46 16 35 H 0.07 0.92 6.47 -51.92 -0.34 0.58 16 36 H 0.35 4.76 5.60 -39.29 -0.22 4.54 16 37 H 0.03 0.44 6.86 -51.93 -0.36 0.08 16 38 H 0.08 1.22 6.57 -51.93 -0.34 0.88 16 39 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.39 6.95 -51.93 -0.36 1.03 16 41 H 0.03 0.52 6.56 -51.93 -0.34 0.18 16 42 H 0.02 0.37 7.20 -51.93 -0.37 -0.01 16 43 H 0.01 0.20 7.57 -51.93 -0.39 -0.19 16 44 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.14 1.55 6.62 -52.49 -0.35 1.20 16 46 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 47 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 48 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 49 H 0.12 1.37 7.52 -52.49 -0.39 0.98 16 LS Contribution 388.27 15.07 5.85 5.85 Total: -1.00 -31.41 388.27 -9.10 -40.51 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -8.04 Total: 4.21 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -1.86 Total: -17.46 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.28 Total: -36.53 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.66 Total: -13.67 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.67 Total: 17.09 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.41 -9.10 -40.51 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895893107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.327 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds