Wall clock time and date at job start Tue Mar 31 2020 13:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45197 * 109.47135 * 2 1 4 4 C 1.34224 * 117.00151 * 179.97438 * 3 2 1 5 5 O 1.20829 * 120.00019 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00346 * 180.02562 * 4 3 2 7 7 C 1.53002 * 109.47463 * 205.00131 * 6 4 3 8 8 N 1.46902 * 109.46996 * 325.00229 * 6 4 3 9 9 C 1.46896 * 110.99965 * 295.90539 * 8 6 4 10 10 C 1.52998 * 109.47173 * 174.41059 * 9 8 6 11 11 H 1.08998 * 109.47436 * 55.00220 * 10 9 8 12 12 C 1.53001 * 109.47095 * 294.99655 * 10 9 8 13 13 C 1.53007 * 109.47368 * 175.00111 * 10 9 8 14 14 C 1.50692 * 109.47290 * 184.99894 * 13 10 9 15 15 H 1.08002 * 120.00053 * 359.97438 * 14 13 10 16 16 C 1.37876 * 120.00054 * 179.97438 * 14 13 10 17 17 N 1.31519 * 120.00080 * 179.97438 * 16 14 13 18 18 Si 1.86801 * 120.00021 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.46769 * 89.99917 * 18 16 14 20 20 H 1.48498 * 109.47012 * 209.99629 * 18 16 14 21 21 H 1.48494 * 109.47171 * 329.99968 * 18 16 14 22 22 C 1.50699 * 109.47201 * 85.00106 * 6 4 3 23 23 C 1.38239 * 119.99866 * 236.12857 * 22 6 4 24 24 C 1.38238 * 119.99593 * 179.79158 * 23 22 6 25 25 C 1.38231 * 119.99910 * 0.43567 * 24 23 22 26 26 C 1.38234 * 120.00384 * 359.81527 * 25 24 23 27 27 C 1.38234 * 120.00058 * 359.97438 * 26 25 24 28 28 H 1.09005 * 109.47075 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47401 * 299.99509 * 1 2 3 30 30 H 1.09000 * 109.47100 * 60.00352 * 1 2 3 31 31 H 1.09001 * 109.47281 * 239.99772 * 2 1 3 32 32 H 1.09007 * 109.46937 * 120.00287 * 2 1 3 33 33 H 1.08997 * 109.47173 * 179.97438 * 7 6 4 34 34 H 1.08992 * 109.47202 * 300.00002 * 7 6 4 35 35 H 1.09008 * 109.46887 * 59.99673 * 7 6 4 36 36 H 1.00900 * 110.99856 * 59.85734 * 8 6 4 37 37 H 1.08996 * 109.47343 * 54.40649 * 9 8 6 38 38 H 1.09004 * 109.47519 * 294.40897 * 9 8 6 39 39 H 1.08993 * 109.47452 * 300.00072 * 12 10 9 40 40 H 1.09002 * 109.47035 * 179.97438 * 12 10 9 41 41 H 1.09003 * 109.46800 * 60.00144 * 12 10 9 42 42 H 1.08999 * 109.46979 * 304.99863 * 13 10 9 43 43 H 1.08998 * 109.47181 * 64.99611 * 13 10 9 44 44 H 0.97000 * 119.99819 * 179.97438 * 17 16 14 45 45 H 1.08001 * 120.00264 * 359.97438 * 23 22 6 46 46 H 1.08004 * 119.99725 * 180.27371 * 24 23 22 47 47 H 1.08007 * 119.99729 * 179.83947 * 25 24 23 48 48 H 1.07997 * 119.99976 * 179.97438 * 26 25 24 49 49 H 1.07994 * 120.00315 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9373 0.0012 7 6 5.3239 2.9091 -0.6080 8 7 3.0597 3.8237 -0.7933 9 6 3.0383 3.4118 -2.2031 10 6 2.0277 4.2677 -2.9692 11 1 2.2639 5.3224 -2.8282 12 6 0.6186 3.9859 -2.4438 13 6 2.0945 3.9249 -4.4589 14 6 1.1892 4.8516 -5.2287 15 1 0.6225 5.6091 -4.7076 16 6 1.0844 4.7326 -6.5983 17 7 0.2939 5.5410 -7.2701 18 14 2.0639 3.4220 -7.4996 19 1 1.2641 2.1733 -7.5789 20 1 2.3795 3.8957 -8.8712 21 1 3.3267 3.1553 -6.7652 22 6 3.9978 3.4484 1.4167 23 6 3.3766 4.6354 1.7578 24 6 3.4437 5.1020 3.0573 25 6 4.1396 4.3863 4.0136 26 6 4.7651 3.2021 3.6713 27 6 4.6944 2.7332 2.3728 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.7403 3.9164 -0.6079 34 1 5.9627 2.2515 -0.0186 35 1 5.2682 2.5394 -1.6319 36 1 2.1261 3.8576 -0.4122 37 1 2.7511 2.3625 -2.2708 38 1 4.0297 3.5456 -2.6359 39 1 0.3824 2.9313 -2.5849 40 1 -0.1013 4.5960 -2.9893 41 1 0.5710 4.2301 -1.3826 42 1 3.1189 4.0408 -4.8128 43 1 1.7725 2.8945 -4.6095 44 1 0.2204 5.4575 -8.2337 45 1 2.8364 5.1966 1.0098 46 1 2.9547 6.0271 3.3248 47 1 4.1942 4.7522 5.0283 48 1 5.3091 2.6432 4.4183 49 1 5.1834 1.8082 2.1053 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895893107.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:20 Heat of formation + Delta-G solvation = -88.391409 kcal Electronic energy + Delta-G solvation = -27987.362955 eV Core-core repulsion = 24299.298818 eV Total energy + Delta-G solvation = -3688.064138 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.23060 -40.17984 -38.61195 -37.87783 -36.34931 -34.39431 -32.63519 -32.29885 -31.70167 -30.15854 -29.06524 -27.46039 -25.92273 -24.48435 -23.74645 -23.10402 -22.96941 -20.87999 -20.77095 -19.01908 -18.87535 -18.24952 -17.92209 -17.48934 -16.61266 -16.45545 -15.99304 -15.69740 -15.30167 -15.20624 -15.08834 -14.85864 -14.63412 -14.22199 -14.06872 -13.89606 -13.78301 -13.65256 -13.48383 -13.31043 -13.10089 -13.00024 -12.92833 -12.76308 -12.60480 -12.56469 -12.19917 -12.09432 -11.89491 -11.73493 -11.70372 -11.59873 -11.43401 -11.21776 -11.05358 -10.73007 -9.84203 -9.76632 -9.62672 -8.25163 -6.26677 0.31552 0.50369 0.99405 1.34774 1.36927 1.48041 1.52742 2.37469 2.83436 2.88865 3.10260 3.48604 3.54117 3.83811 3.91570 3.99150 4.09434 4.12729 4.14135 4.18569 4.24323 4.32272 4.38895 4.55579 4.58822 4.65797 4.69078 4.71830 4.76371 4.83487 4.85901 4.93079 5.01686 5.04026 5.08004 5.11252 5.17868 5.28374 5.35101 5.38080 5.47266 5.53988 5.58562 5.64617 5.68754 5.72717 5.85831 6.09538 6.21253 6.35688 6.54777 6.80745 7.36719 8.91370 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014486 B = 0.003555 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1932.419806 B = 7875.138613 C = 8507.330757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.055 3.945 3 O -0.359 6.359 4 C 0.441 3.559 5 O -0.530 6.530 6 C 0.175 3.825 7 C -0.129 4.129 8 N -0.653 5.653 9 C 0.069 3.931 10 C -0.068 4.068 11 H 0.066 0.934 12 C -0.127 4.127 13 C -0.006 4.006 14 C -0.514 4.514 15 H 0.040 0.960 16 C 0.005 3.995 17 N -0.952 5.952 18 Si 0.941 3.059 19 H -0.270 1.270 20 H -0.286 1.286 21 H -0.249 1.249 22 C -0.092 4.092 23 C -0.099 4.099 24 C -0.124 4.124 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.125 4.125 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.357 0.643 37 H 0.020 0.980 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.016 0.984 43 H 0.011 0.989 44 H 0.264 0.736 45 H 0.138 0.862 46 H 0.146 0.854 47 H 0.149 0.851 48 H 0.143 0.857 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.077 -8.159 24.605 26.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 O -0.276 6.276 4 C 0.283 3.717 5 O -0.418 6.418 6 C 0.081 3.919 7 C -0.187 4.187 8 N -0.287 5.287 9 C -0.059 4.059 10 C -0.087 4.087 11 H 0.084 0.916 12 C -0.184 4.184 13 C -0.044 4.044 14 C -0.552 4.552 15 H 0.058 0.942 16 C -0.192 4.192 17 N -0.593 5.593 18 Si 0.766 3.234 19 H -0.196 1.196 20 H -0.211 1.211 21 H -0.173 1.173 22 C -0.093 4.093 23 C -0.117 4.117 24 C -0.142 4.142 25 C -0.133 4.133 26 C -0.142 4.142 27 C -0.143 4.143 28 H 0.120 0.880 29 H 0.091 0.909 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.091 0.909 33 H 0.109 0.891 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.179 0.821 37 H 0.038 0.962 38 H 0.096 0.904 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.084 0.916 42 H 0.035 0.965 43 H 0.029 0.971 44 H 0.073 0.927 45 H 0.156 0.844 46 H 0.163 0.837 47 H 0.166 0.834 48 H 0.161 0.839 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 7.677 -7.975 24.340 26.739 hybrid contribution -0.431 -1.446 -1.156 1.900 sum 7.246 -9.420 23.184 26.053 Atomic orbital electron populations 1.21822 0.90517 1.04407 1.03626 1.23263 0.97100 0.79242 1.02257 1.86523 1.24047 1.33834 1.83156 1.25397 0.81047 0.94117 0.71151 1.90602 1.60906 1.43947 1.46318 1.19881 0.95657 0.82557 0.93809 1.21860 0.91797 1.04259 1.00740 1.60734 1.17018 1.49093 1.01895 1.22071 1.00168 0.96147 0.87563 1.20872 0.94538 0.99305 0.93976 0.91596 1.21643 0.96386 1.00571 0.99818 1.19542 0.95817 0.95466 0.93526 1.21414 1.25026 1.16585 0.92168 0.94160 1.25916 0.96299 0.98159 0.98801 1.70061 1.40573 1.40603 1.08097 0.85790 0.80422 0.79440 0.77798 1.19567 1.21144 1.17286 1.19300 1.01161 0.97177 0.91644 1.21247 0.98105 0.94971 0.97338 1.21508 0.99280 1.00837 0.92565 1.21562 0.96433 0.94621 1.00660 1.21352 1.00072 0.97101 0.95663 1.21110 0.99311 0.99887 0.94004 0.88008 0.90864 0.92019 0.92035 0.90871 0.89058 0.90582 0.92172 0.82087 0.96185 0.90403 0.93776 0.94137 0.91643 0.96520 0.97086 0.92714 0.84413 0.83669 0.83357 0.83930 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 10.29 71.98 0.74 -1.74 16 2 C 0.05 1.21 6.19 71.98 0.45 1.65 16 3 O -0.36 -9.59 9.31 -51.36 -0.48 -10.07 16 4 C 0.44 12.45 4.98 71.23 0.35 12.80 16 5 O -0.53 -16.77 15.65 21.96 0.34 -16.43 16 6 C 0.17 4.40 0.76 2.03 0.00 4.40 16 7 C -0.13 -3.12 7.49 71.98 0.54 -2.58 16 8 N -0.65 -17.24 4.82 -477.65 -2.30 -19.54 16 9 C 0.07 2.17 4.30 86.30 0.37 2.54 16 10 C -0.07 -2.56 2.54 -10.79 -0.03 -2.59 16 11 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 12 C -0.13 -4.47 8.78 71.98 0.63 -3.84 16 13 C -0.01 -0.26 3.52 29.85 0.10 -0.15 16 14 C -0.51 -29.14 8.96 25.60 0.23 -28.91 16 15 H 0.04 2.50 7.30 -2.91 -0.02 2.47 16 16 C 0.00 0.27 5.47 84.65 0.46 0.73 16 17 N -0.95 -59.81 13.96 21.45 0.30 -59.51 16 18 Si 0.94 44.75 27.47 68.60 1.88 46.64 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 21 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 22 C -0.09 -2.09 4.76 -19.86 -0.09 -2.18 16 23 C -0.10 -2.02 9.17 22.27 0.20 -1.82 16 24 C -0.12 -2.03 10.05 22.27 0.22 -1.81 16 25 C -0.12 -1.68 10.05 22.27 0.22 -1.46 16 26 C -0.12 -2.04 10.05 22.27 0.22 -1.82 16 27 C -0.12 -2.61 8.80 22.27 0.20 -2.41 16 28 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 29 H 0.07 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 32 H 0.07 1.50 8.13 -2.38 -0.02 1.48 16 33 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 1.75 7.33 -2.39 -0.02 1.73 16 35 H 0.06 1.54 6.47 -2.38 -0.02 1.53 16 36 H 0.36 9.13 5.60 -89.69 -0.50 8.62 16 37 H 0.02 0.66 6.86 -2.39 -0.02 0.64 16 38 H 0.08 2.43 6.57 -2.39 -0.02 2.41 16 39 H 0.04 1.51 8.14 -2.39 -0.02 1.50 16 40 H 0.04 1.65 6.95 -2.39 -0.02 1.63 16 41 H 0.06 1.88 6.56 -2.39 -0.02 1.86 16 42 H 0.02 0.76 7.20 -2.39 -0.02 0.75 16 43 H 0.01 0.50 7.57 -2.39 -0.02 0.48 16 44 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 45 H 0.14 2.84 6.62 -2.91 -0.02 2.82 16 46 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 47 H 0.15 1.32 8.06 -2.91 -0.02 1.30 16 48 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 49 H 0.12 2.51 7.52 -2.91 -0.02 2.49 16 Total: -1.00 -68.50 388.27 4.95 -63.55 By element: Atomic # 1 Polarization: 24.17 SS G_CDS: 0.37 Total: 24.54 kcal Atomic # 6 Polarization: -34.02 SS G_CDS: 4.83 Total: -29.19 kcal Atomic # 7 Polarization: -77.05 SS G_CDS: -2.00 Total: -79.05 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.13 Total: -26.49 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.88 Total: 46.64 kcal Total: -68.50 4.95 -63.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895893107.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.838 kcal (2) G-P(sol) polarization free energy of solvation -68.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds