Wall clock time and date at job start Tue Mar 31 2020 13:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45195 * 109.47151 * 2 1 4 4 C 1.34236 * 116.99802 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00041 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99798 * 180.02562 * 4 3 2 7 7 C 1.52993 * 109.47216 * 82.24976 * 6 4 3 8 8 N 1.46900 * 109.47312 * 322.24892 * 6 4 3 9 9 C 1.46904 * 111.00082 * 66.53936 * 8 6 4 10 10 C 1.52996 * 109.47367 * 174.01433 * 9 8 6 11 11 H 1.08998 * 109.47316 * 54.99591 * 10 9 8 12 12 C 1.53009 * 109.46927 * 294.99925 * 10 9 8 13 13 C 1.52995 * 109.47218 * 175.00028 * 10 9 8 14 14 C 1.50703 * 109.46980 * 184.99584 * 13 10 9 15 15 H 1.07996 * 120.00233 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99854 * 179.97438 * 14 13 10 17 17 N 1.31514 * 120.00312 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00104 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47184 * 60.00013 * 18 16 14 20 20 H 1.48505 * 109.47316 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47067 * 299.99928 * 18 16 14 22 22 C 1.50694 * 109.47059 * 202.25053 * 6 4 3 23 23 C 1.38241 * 120.00171 * 111.44263 * 22 6 4 24 24 C 1.38237 * 119.99766 * 179.76733 * 23 22 6 25 25 C 1.38229 * 120.00120 * 0.50471 * 24 23 22 26 26 C 1.38234 * 120.00098 * 359.74509 * 25 24 23 27 27 C 1.38234 * 120.00107 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47209 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47078 * 300.00090 * 1 2 3 30 30 H 1.09000 * 109.46819 * 59.99979 * 1 2 3 31 31 H 1.09003 * 109.46804 * 239.99999 * 2 1 3 32 32 H 1.08999 * 109.47200 * 120.00694 * 2 1 3 33 33 H 1.09008 * 109.47369 * 299.99858 * 7 6 4 34 34 H 1.09006 * 109.47451 * 59.99471 * 7 6 4 35 35 H 1.09002 * 109.47667 * 180.02562 * 7 6 4 36 36 H 1.00899 * 111.00306 * 190.49500 * 8 6 4 37 37 H 1.09002 * 109.47137 * 54.01228 * 9 8 6 38 38 H 1.09006 * 109.46821 * 294.01216 * 9 8 6 39 39 H 1.09002 * 109.46839 * 60.00341 * 12 10 9 40 40 H 1.08997 * 109.47037 * 179.97438 * 12 10 9 41 41 H 1.08998 * 109.46850 * 299.99951 * 12 10 9 42 42 H 1.08999 * 109.47361 * 304.99526 * 13 10 9 43 43 H 1.09004 * 109.47300 * 65.00024 * 13 10 9 44 44 H 0.96994 * 120.00589 * 179.97438 * 17 16 14 45 45 H 1.07999 * 120.00049 * 359.97438 * 23 22 6 46 46 H 1.08000 * 119.99645 * 180.22724 * 24 23 22 47 47 H 1.07998 * 120.00257 * 179.73032 * 25 24 23 48 48 H 1.08002 * 120.00294 * 179.97438 * 26 25 24 49 49 H 1.07995 * 120.00073 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 6 3.9355 3.4825 1.4306 8 7 3.0964 3.8086 -0.8468 9 6 1.7591 3.9944 -0.2678 10 6 0.9831 5.0210 -1.0953 11 1 0.9651 4.7076 -2.1391 12 6 1.6654 6.3861 -0.9844 13 6 -0.4497 5.1227 -0.5685 14 6 -1.2479 6.0408 -1.4579 15 1 -0.7801 6.5050 -2.3135 16 6 -2.5756 6.2874 -1.1799 17 7 -3.1454 5.7218 -0.1382 18 14 -3.5652 7.4249 -2.2827 19 1 -3.5830 6.8823 -3.6649 20 1 -4.9560 7.5237 -1.7713 21 1 -2.9435 8.7734 -2.2881 22 6 5.3281 2.8990 -0.5363 23 6 5.6171 3.4759 -1.7589 24 6 6.9090 3.4449 -2.2497 25 6 7.9099 2.8280 -1.5228 26 6 7.6200 2.2466 -0.3026 27 6 6.3290 2.2817 0.1904 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.9175 3.5102 1.8194 34 1 4.5472 2.8359 2.0599 35 1 4.3517 4.4899 1.4310 36 1 3.5498 4.6966 -1.0018 37 1 1.8536 4.3510 0.7579 38 1 1.2252 3.0441 -0.2744 39 1 2.6862 6.3136 -1.3598 40 1 1.1129 7.1174 -1.5743 41 1 1.6834 6.6995 0.0594 42 1 -0.9065 4.1331 -0.5646 43 1 -0.4364 5.5208 0.4461 44 1 -4.0793 5.8955 0.0576 45 1 4.8341 3.9537 -2.3291 46 1 7.1354 3.8989 -3.2031 47 1 8.9184 2.8000 -1.9082 48 1 8.4019 1.7642 0.2652 49 1 6.1024 1.8271 1.1434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895893108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:25 Heat of formation + Delta-G solvation = -66.558409 kcal Electronic energy + Delta-G solvation = -27899.960387 eV Core-core repulsion = 24212.842999 eV Total energy + Delta-G solvation = -3687.117388 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.01323 -39.21957 -37.32043 -36.57556 -34.79646 -32.40830 -31.57412 -31.13723 -30.53963 -28.90961 -26.83967 -25.88354 -24.85308 -23.40231 -22.60934 -22.01528 -21.92258 -19.90631 -19.12465 -17.51953 -17.20435 -16.52694 -16.44711 -16.09068 -15.43654 -14.94018 -14.77268 -14.49901 -14.16767 -14.14809 -13.81494 -13.48873 -13.33356 -13.05340 -12.85448 -12.66483 -12.56239 -12.41853 -12.22498 -11.92675 -11.79791 -11.64034 -11.54834 -11.31886 -11.08953 -11.05124 -10.88566 -10.69609 -10.43319 -10.37674 -10.23417 -10.05807 -9.69161 -9.16424 -8.95778 -8.93528 -8.86625 -8.32727 -8.31202 -5.96669 -3.97644 1.20229 1.37995 2.25271 2.74950 3.34690 3.39244 3.41657 3.76011 4.18459 4.32440 4.49359 4.67220 4.86170 4.93492 4.95378 5.01394 5.06104 5.08263 5.31487 5.35347 5.39169 5.42442 5.51482 5.58267 5.71468 5.73838 5.82759 5.87449 5.91030 5.98030 5.99874 6.04917 6.16176 6.30846 6.38016 6.40305 6.45644 6.51331 6.53753 6.72266 6.86774 6.93254 7.12284 7.16425 7.24192 7.49300 7.71701 7.85232 7.87707 8.03851 8.47390 9.08485 9.65583 11.14695 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003494 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.210268 B = 8011.000247 C = 9343.301285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.057 3.943 3 O -0.333 6.333 4 C 0.485 3.515 5 O -0.508 6.508 6 C 0.165 3.835 7 C -0.181 4.181 8 N -0.671 5.671 9 C 0.045 3.955 10 C -0.084 4.084 11 H 0.065 0.935 12 C -0.136 4.136 13 C 0.031 3.969 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.888 3.112 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.078 4.078 23 C -0.094 4.094 24 C -0.127 4.127 25 C -0.117 4.117 26 C -0.127 4.127 27 C -0.084 4.084 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.077 0.923 36 H 0.350 0.650 37 H 0.034 0.966 38 H 0.100 0.900 39 H 0.029 0.971 40 H 0.063 0.937 41 H 0.042 0.958 42 H 0.017 0.983 43 H 0.014 0.986 44 H 0.260 0.740 45 H 0.138 0.862 46 H 0.123 0.877 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.292 -8.088 1.595 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 O -0.249 6.249 4 C 0.327 3.673 5 O -0.395 6.395 6 C 0.072 3.928 7 C -0.239 4.239 8 N -0.306 5.306 9 C -0.083 4.083 10 C -0.103 4.103 11 H 0.083 0.917 12 C -0.193 4.193 13 C -0.006 4.006 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.078 4.078 23 C -0.112 4.112 24 C -0.145 4.145 25 C -0.135 4.135 26 C -0.146 4.146 27 C -0.102 4.102 28 H 0.094 0.906 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.172 0.828 37 H 0.052 0.948 38 H 0.117 0.883 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.061 0.939 42 H 0.035 0.965 43 H 0.032 0.968 44 H 0.069 0.931 45 H 0.155 0.845 46 H 0.141 0.859 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 18.098 -8.926 1.271 20.220 hybrid contribution -0.438 0.996 0.173 1.101 sum 17.660 -7.931 1.444 19.413 Atomic orbital electron populations 1.21815 0.92221 1.02647 1.04452 1.23068 0.95820 0.80812 1.01956 1.86775 1.23628 1.31333 1.83188 1.23342 0.80964 0.91506 0.71444 1.90636 1.60681 1.42522 1.45702 1.19422 0.90345 0.89114 0.93924 1.22568 1.04174 1.02376 0.94798 1.60871 1.03989 1.19022 1.46695 1.22700 0.87393 1.01846 0.96324 1.21238 0.97306 0.92342 0.99408 0.91675 1.21778 0.97814 0.98795 1.00944 1.19065 0.88428 0.96999 0.96125 1.21204 0.95101 1.27461 1.11381 0.92677 1.25000 0.97923 0.96213 0.95303 1.69949 1.12388 1.43972 1.27307 0.86718 0.79176 0.81415 0.81030 1.20298 1.21420 1.20346 1.19298 0.92306 1.00468 0.95731 1.21175 0.96936 0.98421 0.94718 1.21145 0.93008 1.00268 1.00058 1.21170 0.99194 0.98064 0.95052 1.21060 0.96412 1.00538 0.96545 1.20927 0.92427 0.97159 0.99719 0.90609 0.91184 0.90846 0.91521 0.91728 0.90047 0.91441 0.90433 0.82789 0.94789 0.88266 0.95177 0.91771 0.93902 0.96510 0.96793 0.93080 0.84457 0.85945 0.86286 0.86158 0.86200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.29 37.16 0.38 -1.42 16 2 C 0.06 0.73 6.19 37.16 0.23 0.96 16 3 O -0.33 -5.10 6.81 -39.27 -0.27 -5.37 16 4 C 0.49 7.45 6.78 36.00 0.24 7.69 16 5 O -0.51 -8.47 15.02 -18.75 -0.28 -8.75 16 6 C 0.17 2.23 0.79 -133.91 -0.11 2.12 16 7 C -0.18 -2.13 7.73 37.15 0.29 -1.84 16 8 N -0.67 -9.60 5.15 -102.33 -0.53 -10.13 16 9 C 0.04 0.74 4.32 -3.82 -0.02 0.73 16 10 C -0.08 -1.65 2.54 -90.62 -0.23 -1.88 16 11 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 12 C -0.14 -2.41 8.78 37.16 0.33 -2.08 16 13 C 0.03 0.78 4.45 -27.88 -0.12 0.65 16 14 C -0.51 -14.06 8.41 -34.44 -0.29 -14.35 16 15 H 0.06 1.47 7.06 -52.49 -0.37 1.10 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 18 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 22 C -0.08 -1.00 4.48 -104.62 -0.47 -1.47 16 23 C -0.09 -1.15 9.06 -39.58 -0.36 -1.50 16 24 C -0.13 -1.34 10.05 -39.59 -0.40 -1.74 16 25 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 26 C -0.13 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.08 -1.01 8.03 -39.58 -0.32 -1.33 16 28 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.84 8.13 -51.93 -0.42 0.42 16 32 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.08 1.01 6.19 -51.92 -0.32 0.69 16 34 H 0.07 0.72 6.98 -51.93 -0.36 0.35 16 35 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.35 4.61 5.63 -39.29 -0.22 4.39 16 37 H 0.03 0.56 5.86 -51.93 -0.30 0.25 16 38 H 0.10 1.79 5.14 -51.93 -0.27 1.53 16 39 H 0.03 0.44 6.56 -51.93 -0.34 0.09 16 40 H 0.06 1.24 6.95 -51.93 -0.36 0.88 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.14 1.64 6.55 -52.49 -0.34 1.29 16 46 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 47 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 48 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 49 H 0.12 1.38 7.02 -52.49 -0.37 1.01 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -30.98 386.39 -9.16 -40.14 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.89 Total: 4.88 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -1.73 Total: -17.24 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.21 Total: -35.91 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: -0.55 Total: -14.12 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.98 -9.16 -40.14 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895893108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.420 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds