Wall clock time and date at job start Tue Mar 31 2020 13:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45195 * 109.47151 * 2 1 4 4 C 1.34236 * 116.99802 * 179.97438 * 3 2 1 5 5 O 1.20823 * 120.00041 * 0.02562 * 4 3 2 6 6 C 1.50698 * 119.99798 * 180.02562 * 4 3 2 7 7 C 1.52993 * 109.47216 * 82.24976 * 6 4 3 8 8 N 1.46900 * 109.47312 * 322.24892 * 6 4 3 9 9 C 1.46904 * 111.00082 * 66.53936 * 8 6 4 10 10 C 1.52996 * 109.47367 * 174.01433 * 9 8 6 11 11 H 1.08998 * 109.47316 * 54.99591 * 10 9 8 12 12 C 1.53009 * 109.46927 * 294.99925 * 10 9 8 13 13 C 1.52995 * 109.47218 * 175.00028 * 10 9 8 14 14 C 1.50703 * 109.46980 * 184.99584 * 13 10 9 15 15 H 1.07996 * 120.00233 * 0.02562 * 14 13 10 16 16 C 1.37877 * 119.99854 * 179.97438 * 14 13 10 17 17 N 1.31514 * 120.00312 * 0.02562 * 16 14 13 18 18 Si 1.86799 * 120.00104 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47184 * 60.00013 * 18 16 14 20 20 H 1.48505 * 109.47316 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47067 * 299.99928 * 18 16 14 22 22 C 1.50694 * 109.47059 * 202.25053 * 6 4 3 23 23 C 1.38241 * 120.00171 * 111.44263 * 22 6 4 24 24 C 1.38237 * 119.99766 * 179.76733 * 23 22 6 25 25 C 1.38229 * 120.00120 * 0.50471 * 24 23 22 26 26 C 1.38234 * 120.00098 * 359.74509 * 25 24 23 27 27 C 1.38234 * 120.00107 * 0.02562 * 26 25 24 28 28 H 1.08999 * 109.47209 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47078 * 300.00090 * 1 2 3 30 30 H 1.09000 * 109.46819 * 59.99979 * 1 2 3 31 31 H 1.09003 * 109.46804 * 239.99999 * 2 1 3 32 32 H 1.08999 * 109.47200 * 120.00694 * 2 1 3 33 33 H 1.09008 * 109.47369 * 299.99858 * 7 6 4 34 34 H 1.09006 * 109.47451 * 59.99471 * 7 6 4 35 35 H 1.09002 * 109.47667 * 180.02562 * 7 6 4 36 36 H 1.00899 * 111.00306 * 190.49500 * 8 6 4 37 37 H 1.09002 * 109.47137 * 54.01228 * 9 8 6 38 38 H 1.09006 * 109.46821 * 294.01216 * 9 8 6 39 39 H 1.09002 * 109.46839 * 60.00341 * 12 10 9 40 40 H 1.08997 * 109.47037 * 179.97438 * 12 10 9 41 41 H 1.08998 * 109.46850 * 299.99951 * 12 10 9 42 42 H 1.08999 * 109.47361 * 304.99526 * 13 10 9 43 43 H 1.09004 * 109.47300 * 65.00024 * 13 10 9 44 44 H 0.96994 * 120.00589 * 179.97438 * 17 16 14 45 45 H 1.07999 * 120.00049 * 359.97438 * 23 22 6 46 46 H 1.08000 * 119.99645 * 180.22724 * 24 23 22 47 47 H 1.07998 * 120.00257 * 179.73032 * 25 24 23 48 48 H 1.08002 * 120.00294 * 179.97438 * 26 25 24 49 49 H 1.07995 * 120.00073 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 0.0005 5 8 4.0808 0.5865 0.0005 6 6 3.9208 2.9373 0.0012 7 6 3.9355 3.4825 1.4306 8 7 3.0964 3.8086 -0.8468 9 6 1.7591 3.9944 -0.2678 10 6 0.9831 5.0210 -1.0953 11 1 0.9651 4.7076 -2.1391 12 6 1.6654 6.3861 -0.9844 13 6 -0.4497 5.1227 -0.5685 14 6 -1.2479 6.0408 -1.4579 15 1 -0.7801 6.5050 -2.3135 16 6 -2.5756 6.2874 -1.1799 17 7 -3.1454 5.7218 -0.1382 18 14 -3.5652 7.4249 -2.2827 19 1 -3.5830 6.8823 -3.6649 20 1 -4.9560 7.5237 -1.7713 21 1 -2.9435 8.7734 -2.2881 22 6 5.3281 2.8990 -0.5363 23 6 5.6171 3.4759 -1.7589 24 6 6.9090 3.4449 -2.2497 25 6 7.9099 2.8280 -1.5228 26 6 7.6200 2.2466 -0.3026 27 6 6.3290 2.2817 0.1904 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.9175 3.5102 1.8194 34 1 4.5472 2.8359 2.0599 35 1 4.3517 4.4899 1.4310 36 1 3.5498 4.6966 -1.0018 37 1 1.8536 4.3510 0.7579 38 1 1.2252 3.0441 -0.2744 39 1 2.6862 6.3136 -1.3598 40 1 1.1129 7.1174 -1.5743 41 1 1.6834 6.6995 0.0594 42 1 -0.9065 4.1331 -0.5646 43 1 -0.4364 5.5208 0.4461 44 1 -4.0793 5.8955 0.0576 45 1 4.8341 3.9537 -2.3291 46 1 7.1354 3.8989 -3.2031 47 1 8.9184 2.8000 -1.9082 48 1 8.4019 1.7642 0.2652 49 1 6.1024 1.8271 1.1434 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895893108.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:24 Heat of formation + Delta-G solvation = -82.353702 kcal Electronic energy + Delta-G solvation = -27900.645322 eV Core-core repulsion = 24212.842999 eV Total energy + Delta-G solvation = -3687.802323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.12859 -40.17855 -38.58189 -37.73618 -36.32914 -34.31544 -32.59801 -32.13153 -31.60633 -29.96730 -28.65720 -27.18247 -26.11765 -24.79367 -23.76928 -23.10939 -22.98261 -20.97354 -20.70378 -18.73181 -18.57069 -17.96542 -17.65607 -17.34596 -16.59334 -16.33265 -15.99690 -15.88542 -15.36118 -15.16663 -14.96379 -14.66533 -14.53259 -14.21183 -14.12423 -13.93316 -13.74140 -13.48767 -13.39053 -13.31537 -13.12803 -12.90576 -12.76533 -12.73847 -12.65382 -12.43004 -12.21221 -12.01765 -11.92739 -11.71542 -11.54340 -11.46203 -11.28639 -11.00950 -10.88410 -10.48256 -9.76726 -9.72783 -9.50362 -8.13147 -6.21494 0.34597 0.55075 1.07514 1.42436 1.44571 1.52005 1.69736 2.44803 2.91476 3.03015 3.20425 3.32773 3.66252 3.85503 3.98631 4.03748 4.11268 4.19921 4.27345 4.30538 4.30820 4.36099 4.46752 4.51857 4.55200 4.67872 4.72954 4.77810 4.83256 4.89094 4.91709 5.03814 5.06288 5.13195 5.19154 5.23236 5.32060 5.41692 5.43993 5.54072 5.56087 5.59745 5.64707 5.68390 5.84870 5.93093 5.97581 6.12851 6.33396 6.36523 6.68324 6.94429 7.46288 8.98494 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014458 B = 0.003494 C = 0.002996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.210268 B = 8011.000247 C = 9343.301285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.348 6.348 4 C 0.481 3.519 5 O -0.525 6.525 6 C 0.168 3.832 7 C -0.177 4.177 8 N -0.668 5.668 9 C 0.059 3.941 10 C -0.074 4.074 11 H 0.055 0.945 12 C -0.129 4.129 13 C 0.038 3.962 14 C -0.528 4.528 15 H 0.060 0.940 16 C 0.000 4.000 17 N -0.934 5.934 18 Si 0.956 3.044 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.267 1.267 22 C -0.094 4.094 23 C -0.109 4.109 24 C -0.130 4.130 25 C -0.116 4.116 26 C -0.131 4.131 27 C -0.098 4.098 28 H 0.104 0.896 29 H 0.061 0.939 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.358 0.642 37 H 0.038 0.962 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.045 0.955 41 H 0.043 0.957 42 H -0.013 1.013 43 H -0.010 1.010 44 H 0.261 0.739 45 H 0.135 0.865 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.143 0.857 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.307 -7.573 0.723 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.265 6.265 4 C 0.324 3.676 5 O -0.414 6.414 6 C 0.075 3.925 7 C -0.235 4.235 8 N -0.303 5.303 9 C -0.069 4.069 10 C -0.093 4.093 11 H 0.073 0.927 12 C -0.186 4.186 13 C 0.001 3.999 14 C -0.566 4.566 15 H 0.078 0.922 16 C -0.197 4.197 17 N -0.575 5.575 18 Si 0.782 3.218 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.192 1.192 22 C -0.094 4.094 23 C -0.128 4.128 24 C -0.148 4.148 25 C -0.134 4.134 26 C -0.149 4.149 27 C -0.116 4.116 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.182 0.818 37 H 0.056 0.944 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.062 0.938 42 H 0.005 0.995 43 H 0.009 0.991 44 H 0.069 0.931 45 H 0.153 0.847 46 H 0.161 0.839 47 H 0.165 0.835 48 H 0.161 0.839 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 20.128 -8.403 0.391 21.815 hybrid contribution -1.012 0.756 0.446 1.340 sum 19.116 -7.647 0.836 20.606 Atomic orbital electron populations 1.21814 0.91514 1.04130 1.03107 1.23250 0.96361 0.79968 1.02525 1.86775 1.23875 1.32747 1.83055 1.23780 0.80792 0.92199 0.70860 1.90611 1.60935 1.43203 1.46611 1.19465 0.90558 0.87743 0.94702 1.22545 1.03847 1.03297 0.93852 1.60718 1.03078 1.19633 1.46911 1.22362 0.88393 1.00108 0.95992 1.21012 0.94826 0.94653 0.98826 0.92654 1.21686 0.99352 0.96664 1.00904 1.18932 0.91573 0.94656 0.94788 1.21621 0.95691 1.27561 1.11691 0.92152 1.25890 0.99257 0.97861 0.96731 1.70087 1.12735 1.45533 1.29112 0.85633 0.77455 0.79585 0.79168 1.19449 1.21205 1.19218 1.19308 0.91795 1.01818 0.96504 1.21270 0.97829 0.99032 0.94628 1.21446 0.92453 0.99963 1.00899 1.21541 1.00399 0.96850 0.94568 1.21385 0.96290 1.00197 0.96995 1.21043 0.93105 0.97534 0.99925 0.87717 0.92017 0.92586 0.91404 0.90635 0.91085 0.90322 0.89107 0.81798 0.94407 0.89780 0.91514 0.93546 0.93829 0.99478 0.99141 0.93050 0.84735 0.83859 0.83487 0.83947 0.86302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 10.29 71.98 0.74 -2.79 16 2 C 0.05 1.35 6.19 71.98 0.45 1.80 16 3 O -0.35 -10.92 6.81 -51.48 -0.35 -11.27 16 4 C 0.48 14.79 6.78 71.24 0.48 15.27 16 5 O -0.53 -17.46 15.02 21.97 0.33 -17.13 16 6 C 0.17 4.45 0.79 2.03 0.00 4.45 16 7 C -0.18 -4.03 7.73 71.98 0.56 -3.48 16 8 N -0.67 -18.73 5.15 -477.65 -2.46 -21.19 16 9 C 0.06 2.00 4.32 86.30 0.37 2.38 16 10 C -0.07 -2.94 2.54 -10.79 -0.03 -2.97 16 11 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 12 C -0.13 -4.44 8.78 71.99 0.63 -3.81 16 13 C 0.04 1.96 4.45 29.85 0.13 2.10 16 14 C -0.53 -29.39 8.41 25.60 0.22 -29.17 16 15 H 0.06 3.23 7.06 -2.91 -0.02 3.21 16 16 C 0.00 -0.01 5.46 84.65 0.46 0.46 16 17 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 18 Si 0.96 44.14 29.54 68.60 2.03 46.16 16 19 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 20 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 C -0.09 -2.31 4.48 -19.87 -0.09 -2.40 16 23 C -0.11 -2.49 9.06 22.27 0.20 -2.29 16 24 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 25 C -0.12 -1.95 10.05 22.27 0.22 -1.73 16 26 C -0.13 -2.43 10.05 22.27 0.22 -2.20 16 27 C -0.10 -2.21 8.03 22.27 0.18 -2.03 16 28 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.07 1.72 8.13 -2.39 -0.02 1.71 16 32 H 0.08 1.77 8.13 -2.39 -0.02 1.75 16 33 H 0.07 1.76 6.19 -2.38 -0.01 1.74 16 34 H 0.08 1.60 6.98 -2.38 -0.02 1.58 16 35 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.36 8.91 5.63 -89.69 -0.51 8.40 16 37 H 0.04 1.25 5.86 -2.39 -0.01 1.23 16 38 H 0.08 3.15 5.14 -2.38 -0.01 3.14 16 39 H 0.07 1.80 6.56 -2.39 -0.02 1.79 16 40 H 0.05 1.76 6.95 -2.39 -0.02 1.74 16 41 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 42 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 43 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 44 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.13 3.04 6.55 -2.91 -0.02 3.02 16 46 H 0.14 1.99 8.06 -2.91 -0.02 1.96 16 47 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 48 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 49 H 0.12 2.62 7.02 -2.91 -0.02 2.60 16 Total: -1.00 -67.67 386.39 5.24 -62.43 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: 0.43 Total: 25.86 kcal Atomic # 6 Polarization: -33.59 SS G_CDS: 4.98 Total: -28.62 kcal Atomic # 7 Polarization: -75.27 SS G_CDS: -2.17 Total: -77.45 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.02 Total: -28.39 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.16 kcal Total: -67.67 5.24 -62.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895893108.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.919 kcal (2) G-P(sol) polarization free energy of solvation -67.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.354 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds