Wall clock time and date at job start Tue Mar 31 2020 13:40:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47120 * 2 1 4 4 C 1.34230 * 117.00025 * 179.97438 * 3 2 1 5 5 O 1.20835 * 119.99733 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00403 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.46673 * 82.40675 * 6 4 3 8 8 N 1.46891 * 109.46997 * 322.41047 * 6 4 3 9 9 C 1.46897 * 111.00572 * 66.54905 * 8 6 4 10 10 C 1.53001 * 109.47412 * 173.94938 * 9 8 6 11 11 H 1.08997 * 109.46809 * 304.99419 * 10 9 8 12 12 C 1.52999 * 109.47167 * 64.99821 * 10 9 8 13 13 C 1.53002 * 109.46991 * 184.99721 * 10 9 8 14 14 C 1.50704 * 109.47066 * 174.99950 * 13 10 9 15 15 H 1.08001 * 119.99720 * 359.97438 * 14 13 10 16 16 C 1.37874 * 119.99659 * 180.02562 * 14 13 10 17 17 N 1.31505 * 120.00556 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99429 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47175 * 59.99901 * 18 16 14 20 20 H 1.48500 * 109.46755 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47212 * 299.99793 * 18 16 14 22 22 C 1.50700 * 109.47338 * 202.40389 * 6 4 3 23 23 C 1.38233 * 119.99651 * 111.51898 * 22 6 4 24 24 C 1.38238 * 120.00101 * 180.32059 * 23 22 6 25 25 C 1.38233 * 119.99512 * 359.95546 * 24 23 22 26 26 C 1.38231 * 120.00447 * 0.02562 * 25 24 23 27 27 C 1.38235 * 119.99931 * 291.79035 * 22 6 4 28 28 H 1.08999 * 109.46875 * 59.99387 * 1 2 3 29 29 H 1.08998 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46872 * 300.00507 * 1 2 3 31 31 H 1.09003 * 109.47066 * 240.00435 * 2 1 3 32 32 H 1.09000 * 109.47054 * 120.00099 * 2 1 3 33 33 H 1.09004 * 109.46913 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.46894 * 300.00137 * 7 6 4 35 35 H 1.08999 * 109.47313 * 60.00349 * 7 6 4 36 36 H 1.00907 * 111.00286 * 190.50367 * 8 6 4 37 37 H 1.09007 * 109.46887 * 293.94642 * 9 8 6 38 38 H 1.08999 * 109.47286 * 53.94248 * 9 8 6 39 39 H 1.09002 * 109.46941 * 179.97438 * 12 10 9 40 40 H 1.08999 * 109.46757 * 300.00094 * 12 10 9 41 41 H 1.08997 * 109.47585 * 60.00073 * 12 10 9 42 42 H 1.08994 * 109.47113 * 294.99668 * 13 10 9 43 43 H 1.09005 * 109.47239 * 54.99836 * 13 10 9 44 44 H 0.97003 * 120.00211 * 180.02562 * 17 16 14 45 45 H 1.08001 * 120.00446 * 0.27799 * 23 22 6 46 46 H 1.07998 * 120.00329 * 179.97438 * 24 23 22 47 47 H 1.08005 * 119.99988 * 179.97438 * 25 24 23 48 48 H 1.08005 * 120.00580 * 179.97438 * 26 25 24 49 49 H 1.07992 * 120.00410 * 359.72944 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9374 0.0000 7 6 3.9389 3.4823 1.4296 8 7 3.0943 3.8088 -0.8457 9 6 1.7586 3.9947 -0.2634 10 6 0.9812 5.0227 -1.0879 11 1 1.5580 5.9451 -1.1557 12 6 0.7367 4.4696 -2.4933 13 6 -0.3611 5.3090 -0.4118 14 6 -1.0733 6.4097 -1.1550 15 1 -0.6142 6.8602 -2.0226 16 6 -2.3104 6.8422 -0.7268 17 7 -2.8692 6.2940 0.3299 18 14 -3.1929 8.2071 -1.6478 19 1 -3.4265 7.7857 -3.0525 20 1 -4.4957 8.4848 -0.9916 21 1 -2.3582 9.4351 -1.6317 22 6 5.3269 2.8991 -0.5408 23 6 5.6131 3.4776 -1.7632 24 6 6.9016 3.4368 -2.2625 25 6 7.9039 2.8183 -1.5388 26 6 7.6177 2.2401 -0.3162 27 6 6.3292 2.2807 0.1829 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 4.3560 4.4893 1.4293 34 1 2.9219 3.5099 1.8208 35 1 4.5522 2.8356 2.0572 36 1 3.5475 4.6968 -1.0018 37 1 1.2240 3.0447 -0.2697 38 1 1.8557 4.3501 0.7625 39 1 0.1825 5.2018 -3.0806 40 1 1.6930 4.2656 -2.9749 41 1 0.1599 3.5472 -2.4255 42 1 -0.9734 4.4074 -0.4236 43 1 -0.1899 5.6186 0.6193 44 1 -3.7398 6.5980 0.6309 45 1 4.8301 3.9609 -2.3286 46 1 7.1252 3.8883 -3.2177 47 1 8.9105 2.7860 -1.9290 48 1 8.4007 1.7565 0.2490 49 1 6.1056 1.8288 1.1379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895893109.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:29 Heat of formation + Delta-G solvation = -67.051038 kcal Electronic energy + Delta-G solvation = -27919.780941 eV Core-core repulsion = 24232.642192 eV Total energy + Delta-G solvation = -3687.138750 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.01613 -39.22133 -37.25240 -36.59046 -34.79784 -32.39277 -31.60553 -31.14375 -30.56292 -28.90799 -26.76327 -25.87250 -24.70608 -23.41623 -22.62378 -22.02741 -21.94013 -19.95135 -19.23470 -17.48554 -17.14481 -16.54254 -16.34388 -16.12900 -15.40499 -14.95170 -14.63272 -14.50756 -14.36451 -14.14775 -13.77548 -13.53347 -13.31546 -13.05000 -12.80530 -12.66567 -12.52846 -12.36171 -12.23190 -11.93624 -11.84666 -11.72662 -11.35224 -11.27138 -11.08001 -10.95930 -10.84241 -10.72272 -10.45729 -10.32784 -10.24769 -10.14392 -9.64593 -9.16079 -8.94850 -8.93298 -8.86550 -8.31809 -8.29700 -5.96741 -3.97711 1.20342 1.38182 2.24292 2.73453 3.34646 3.39192 3.41596 3.76186 4.17948 4.32405 4.49294 4.66598 4.86123 4.93532 4.95127 4.98447 5.02916 5.08348 5.28466 5.35678 5.39085 5.42872 5.51570 5.58083 5.69857 5.75889 5.80809 5.86584 5.88593 5.99808 6.01526 6.11484 6.20145 6.36181 6.44408 6.46950 6.49498 6.56911 6.64263 6.68869 6.92448 7.00383 7.15876 7.18487 7.27365 7.49338 7.70726 7.83876 7.87332 8.03800 8.47496 9.08464 9.65555 11.14638 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.003471 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.483424 B = 8065.226454 C = 9309.900907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.057 3.943 3 O -0.333 6.333 4 C 0.486 3.514 5 O -0.509 6.509 6 C 0.166 3.834 7 C -0.181 4.181 8 N -0.668 5.668 9 C 0.043 3.957 10 C -0.082 4.082 11 H 0.052 0.948 12 C -0.123 4.123 13 C 0.030 3.970 14 C -0.513 4.513 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.889 3.111 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.077 4.077 23 C -0.094 4.094 24 C -0.127 4.127 25 C -0.117 4.117 26 C -0.128 4.128 27 C -0.084 4.084 28 H 0.071 0.929 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.349 0.651 37 H 0.099 0.901 38 H 0.035 0.965 39 H 0.053 0.947 40 H 0.039 0.961 41 H 0.041 0.959 42 H 0.017 0.983 43 H 0.012 0.988 44 H 0.260 0.740 45 H 0.138 0.862 46 H 0.122 0.878 47 H 0.119 0.881 48 H 0.120 0.880 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.445 -10.088 -0.023 20.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 O -0.249 6.249 4 C 0.328 3.672 5 O -0.396 6.396 6 C 0.072 3.928 7 C -0.240 4.240 8 N -0.302 5.302 9 C -0.084 4.084 10 C -0.101 4.101 11 H 0.070 0.930 12 C -0.180 4.180 13 C -0.007 4.007 14 C -0.551 4.551 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.203 1.203 22 C -0.078 4.078 23 C -0.112 4.112 24 C -0.145 4.145 25 C -0.135 4.135 26 C -0.146 4.146 27 C -0.102 4.102 28 H 0.090 0.910 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.170 0.830 37 H 0.117 0.883 38 H 0.053 0.947 39 H 0.072 0.928 40 H 0.058 0.942 41 H 0.060 0.940 42 H 0.035 0.965 43 H 0.030 0.970 44 H 0.069 0.931 45 H 0.156 0.844 46 H 0.140 0.860 47 H 0.137 0.863 48 H 0.138 0.862 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 17.254 -10.915 -0.332 20.419 hybrid contribution -0.375 1.132 0.312 1.233 sum 16.879 -9.782 -0.020 19.509 Atomic orbital electron populations 1.21813 0.92307 1.02651 1.04340 1.23062 0.95764 0.80883 1.01983 1.86774 1.23679 1.31256 1.83217 1.23342 0.80930 0.91519 0.71414 1.90641 1.60678 1.42528 1.45707 1.19420 0.90329 0.89087 0.93935 1.22572 1.04182 1.02422 0.94778 1.60830 1.03838 1.18852 1.46631 1.22717 0.87425 1.02004 0.96220 1.21220 0.98236 0.95241 0.95364 0.92996 1.21593 0.99497 1.00209 0.96694 1.19081 0.89790 0.96634 0.95209 1.21203 1.02551 1.18775 1.12589 0.92668 1.25001 0.97558 0.96776 0.95120 1.69949 1.16785 1.42456 1.24449 0.86716 0.78908 0.82649 0.80056 1.20293 1.21416 1.20345 1.19290 0.92293 1.00454 0.95741 1.21171 0.96959 0.98392 0.94668 1.21146 0.93051 1.00261 1.00039 1.21170 0.99175 0.98090 0.95057 1.21060 0.96448 1.00550 0.96505 1.20928 0.92438 0.97169 0.99707 0.90961 0.90596 0.91183 0.91525 0.91707 0.90373 0.90034 0.91476 0.83012 0.88280 0.94732 0.92818 0.94179 0.94016 0.96458 0.96970 0.93079 0.84413 0.85964 0.86306 0.86176 0.86221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.29 37.16 0.38 -1.33 16 2 C 0.06 0.71 6.19 37.16 0.23 0.94 16 3 O -0.33 -4.99 6.81 -39.26 -0.27 -5.25 16 4 C 0.49 7.34 6.78 36.00 0.24 7.58 16 5 O -0.51 -8.38 15.02 -18.76 -0.28 -8.66 16 6 C 0.17 2.20 0.79 -133.91 -0.11 2.09 16 7 C -0.18 -2.13 7.73 37.16 0.29 -1.84 16 8 N -0.67 -9.33 4.61 -102.33 -0.47 -9.80 16 9 C 0.04 0.72 4.25 -3.83 -0.02 0.70 16 10 C -0.08 -1.60 2.43 -90.62 -0.22 -1.82 16 11 H 0.05 1.01 8.11 -51.93 -0.42 0.59 16 12 C -0.12 -2.31 8.89 37.16 0.33 -1.98 16 13 C 0.03 0.76 4.45 -27.88 -0.12 0.63 16 14 C -0.51 -14.08 8.41 -34.44 -0.29 -14.37 16 15 H 0.06 1.48 7.06 -52.49 -0.37 1.11 16 16 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 17 N -0.90 -26.58 13.29 55.43 0.74 -25.85 16 18 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 20 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 C -0.08 -0.98 4.48 -104.62 -0.47 -1.45 16 23 C -0.09 -1.12 9.06 -39.58 -0.36 -1.48 16 24 C -0.13 -1.33 10.05 -39.58 -0.40 -1.73 16 25 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 26 C -0.13 -1.34 10.05 -39.58 -0.40 -1.73 16 27 C -0.08 -1.01 8.03 -39.58 -0.32 -1.32 16 28 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.82 8.13 -51.93 -0.42 0.39 16 32 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 1.02 6.19 -51.93 -0.32 0.70 16 35 H 0.07 0.71 6.97 -51.93 -0.36 0.35 16 36 H 0.35 4.48 7.45 -39.29 -0.29 4.19 16 37 H 0.10 1.75 5.14 -51.92 -0.27 1.48 16 38 H 0.03 0.57 5.85 -51.93 -0.30 0.27 16 39 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 40 H 0.04 0.67 7.75 -51.93 -0.40 0.26 16 41 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 45 H 0.14 1.60 6.54 -52.49 -0.34 1.26 16 46 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 47 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 48 H 0.12 0.99 8.06 -52.48 -0.42 0.57 16 49 H 0.12 1.37 7.01 -52.49 -0.37 1.01 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -31.09 388.74 -9.19 -40.28 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.02 Total: 4.16 kcal Atomic # 6 Polarization: -15.46 SS G_CDS: -1.72 Total: -17.18 kcal Atomic # 7 Polarization: -35.91 SS G_CDS: 0.26 Total: -35.65 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: -0.55 Total: -13.92 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.09 -9.19 -40.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895893109.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.774 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds