Wall clock time and date at job start Tue Mar 31 2020 13:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47120 * 2 1 4 4 C 1.34230 * 117.00025 * 179.97438 * 3 2 1 5 5 O 1.20835 * 119.99733 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00403 * 179.97438 * 4 3 2 7 7 C 1.53006 * 109.46673 * 82.40675 * 6 4 3 8 8 N 1.46891 * 109.46997 * 322.41047 * 6 4 3 9 9 C 1.46897 * 111.00572 * 66.54905 * 8 6 4 10 10 C 1.53001 * 109.47412 * 173.94938 * 9 8 6 11 11 H 1.08997 * 109.46809 * 304.99419 * 10 9 8 12 12 C 1.52999 * 109.47167 * 64.99821 * 10 9 8 13 13 C 1.53002 * 109.46991 * 184.99721 * 10 9 8 14 14 C 1.50704 * 109.47066 * 174.99950 * 13 10 9 15 15 H 1.08001 * 119.99720 * 359.97438 * 14 13 10 16 16 C 1.37874 * 119.99659 * 180.02562 * 14 13 10 17 17 N 1.31505 * 120.00556 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99429 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47175 * 59.99901 * 18 16 14 20 20 H 1.48500 * 109.46755 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47212 * 299.99793 * 18 16 14 22 22 C 1.50700 * 109.47338 * 202.40389 * 6 4 3 23 23 C 1.38233 * 119.99651 * 111.51898 * 22 6 4 24 24 C 1.38238 * 120.00101 * 180.32059 * 23 22 6 25 25 C 1.38233 * 119.99512 * 359.95546 * 24 23 22 26 26 C 1.38231 * 120.00447 * 0.02562 * 25 24 23 27 27 C 1.38235 * 119.99931 * 291.79035 * 22 6 4 28 28 H 1.08999 * 109.46875 * 59.99387 * 1 2 3 29 29 H 1.08998 * 109.47256 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.46872 * 300.00507 * 1 2 3 31 31 H 1.09003 * 109.47066 * 240.00435 * 2 1 3 32 32 H 1.09000 * 109.47054 * 120.00099 * 2 1 3 33 33 H 1.09004 * 109.46913 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.46894 * 300.00137 * 7 6 4 35 35 H 1.08999 * 109.47313 * 60.00349 * 7 6 4 36 36 H 1.00907 * 111.00286 * 190.50367 * 8 6 4 37 37 H 1.09007 * 109.46887 * 293.94642 * 9 8 6 38 38 H 1.08999 * 109.47286 * 53.94248 * 9 8 6 39 39 H 1.09002 * 109.46941 * 179.97438 * 12 10 9 40 40 H 1.08999 * 109.46757 * 300.00094 * 12 10 9 41 41 H 1.08997 * 109.47585 * 60.00073 * 12 10 9 42 42 H 1.08994 * 109.47113 * 294.99668 * 13 10 9 43 43 H 1.09005 * 109.47239 * 54.99836 * 13 10 9 44 44 H 0.97003 * 120.00211 * 180.02562 * 17 16 14 45 45 H 1.08001 * 120.00446 * 0.27799 * 23 22 6 46 46 H 1.07998 * 120.00329 * 179.97438 * 24 23 22 47 47 H 1.08005 * 119.99988 * 179.97438 * 25 24 23 48 48 H 1.08005 * 120.00580 * 179.97438 * 26 25 24 49 49 H 1.07992 * 120.00410 * 359.72944 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5865 0.0005 6 6 3.9208 2.9374 0.0000 7 6 3.9389 3.4823 1.4296 8 7 3.0943 3.8088 -0.8457 9 6 1.7586 3.9947 -0.2634 10 6 0.9812 5.0227 -1.0879 11 1 1.5580 5.9451 -1.1557 12 6 0.7367 4.4696 -2.4933 13 6 -0.3611 5.3090 -0.4118 14 6 -1.0733 6.4097 -1.1550 15 1 -0.6142 6.8602 -2.0226 16 6 -2.3104 6.8422 -0.7268 17 7 -2.8692 6.2940 0.3299 18 14 -3.1929 8.2071 -1.6478 19 1 -3.4265 7.7857 -3.0525 20 1 -4.4957 8.4848 -0.9916 21 1 -2.3582 9.4351 -1.6317 22 6 5.3269 2.8991 -0.5408 23 6 5.6131 3.4776 -1.7632 24 6 6.9016 3.4368 -2.2625 25 6 7.9039 2.8183 -1.5388 26 6 7.6177 2.2401 -0.3162 27 6 6.3292 2.2807 0.1829 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 4.3560 4.4893 1.4293 34 1 2.9219 3.5099 1.8208 35 1 4.5522 2.8356 2.0572 36 1 3.5475 4.6968 -1.0018 37 1 1.2240 3.0447 -0.2697 38 1 1.8557 4.3501 0.7625 39 1 0.1825 5.2018 -3.0806 40 1 1.6930 4.2656 -2.9749 41 1 0.1599 3.5472 -2.4255 42 1 -0.9734 4.4074 -0.4236 43 1 -0.1899 5.6186 0.6193 44 1 -3.7398 6.5980 0.6309 45 1 4.8301 3.9609 -2.3286 46 1 7.1252 3.8883 -3.2177 47 1 8.9105 2.7860 -1.9290 48 1 8.4007 1.7565 0.2490 49 1 6.1056 1.8288 1.1379 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895893109.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:28 Heat of formation + Delta-G solvation = -82.698109 kcal Electronic energy + Delta-G solvation = -27920.459449 eV Core-core repulsion = 24232.642192 eV Total energy + Delta-G solvation = -3687.817258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.11516 -40.16443 -38.50602 -37.72797 -36.34807 -34.30343 -32.58885 -32.14146 -31.61140 -29.96069 -28.63556 -27.14749 -25.97770 -24.83224 -23.75967 -23.10126 -22.97368 -21.07524 -20.74394 -18.66687 -18.51169 -17.94644 -17.64052 -17.29132 -16.58141 -16.27077 -15.97197 -15.83973 -15.52601 -15.17064 -14.97081 -14.69138 -14.31142 -14.24381 -14.18171 -13.90551 -13.73851 -13.50626 -13.37911 -13.28775 -12.99307 -12.92634 -12.85599 -12.72325 -12.55516 -12.38190 -12.12839 -12.03273 -11.87639 -11.82357 -11.54543 -11.46444 -11.27447 -11.02770 -10.85719 -10.48411 -9.76049 -9.71983 -9.48037 -8.13199 -6.21576 0.35277 0.55714 1.08458 1.42625 1.44784 1.52229 1.70167 2.44878 2.92153 3.03552 3.20462 3.33643 3.67039 3.86164 3.99392 4.04701 4.11666 4.20103 4.24236 4.31538 4.32642 4.40633 4.46663 4.51552 4.60553 4.68964 4.75180 4.78890 4.89856 4.90054 5.04198 5.04734 5.10151 5.12764 5.17507 5.20165 5.39585 5.44859 5.50137 5.54226 5.56936 5.60338 5.65321 5.67924 5.86657 5.92253 5.95998 6.13373 6.33349 6.36224 6.69300 6.94490 7.46326 8.98451 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014242 B = 0.003471 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1965.483424 B = 8065.226454 C = 9309.900907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.052 3.948 3 O -0.347 6.347 4 C 0.482 3.518 5 O -0.526 6.526 6 C 0.169 3.831 7 C -0.177 4.177 8 N -0.662 5.662 9 C 0.059 3.941 10 C -0.072 4.072 11 H 0.057 0.943 12 C -0.113 4.113 13 C 0.037 3.963 14 C -0.527 4.527 15 H 0.061 0.939 16 C -0.001 4.001 17 N -0.934 5.934 18 Si 0.957 3.043 19 H -0.269 1.269 20 H -0.287 1.287 21 H -0.268 1.268 22 C -0.093 4.093 23 C -0.108 4.108 24 C -0.130 4.130 25 C -0.116 4.116 26 C -0.132 4.132 27 C -0.098 4.098 28 H 0.058 0.942 29 H 0.104 0.896 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.358 0.642 37 H 0.089 0.911 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.065 0.935 41 H 0.032 0.968 42 H -0.011 1.011 43 H -0.013 1.013 44 H 0.261 0.739 45 H 0.137 0.863 46 H 0.144 0.856 47 H 0.147 0.853 48 H 0.142 0.858 49 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.239 -9.758 -1.159 21.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.022 4.022 3 O -0.264 6.264 4 C 0.325 3.675 5 O -0.414 6.414 6 C 0.076 3.924 7 C -0.236 4.236 8 N -0.297 5.297 9 C -0.069 4.069 10 C -0.091 4.091 11 H 0.075 0.925 12 C -0.170 4.170 13 C -0.001 4.001 14 C -0.565 4.565 15 H 0.079 0.921 16 C -0.198 4.198 17 N -0.575 5.575 18 Si 0.782 3.218 19 H -0.194 1.194 20 H -0.212 1.212 21 H -0.193 1.193 22 C -0.094 4.094 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.134 4.134 26 C -0.149 4.149 27 C -0.117 4.117 28 H 0.077 0.923 29 H 0.122 0.878 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.180 0.820 37 H 0.107 0.893 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.008 0.992 43 H 0.005 0.995 44 H 0.069 0.931 45 H 0.155 0.845 46 H 0.161 0.839 47 H 0.164 0.836 48 H 0.160 0.840 49 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 19.062 -10.579 -1.479 21.851 hybrid contribution -0.880 0.960 0.675 1.467 sum 18.182 -9.619 -0.804 20.585 Atomic orbital electron populations 1.21817 0.91425 1.04148 1.03175 1.23253 0.96443 0.79974 1.02484 1.86767 1.23819 1.32716 1.83056 1.23739 0.80805 0.92122 0.70836 1.90618 1.60961 1.43204 1.46629 1.19444 0.90569 0.87810 0.94557 1.22544 1.03761 1.03237 0.94043 1.60685 1.02884 1.19456 1.46645 1.22379 0.88529 1.00379 0.95632 1.21017 0.95799 0.96513 0.95751 0.92499 1.21490 1.00440 0.99133 0.95967 1.18951 0.92174 0.94746 0.94184 1.21623 1.02953 1.19191 1.12762 0.92095 1.25895 0.98573 0.99331 0.95982 1.70088 1.17229 1.44109 1.26098 0.85628 0.77604 0.79706 0.78874 1.19376 1.21237 1.19257 1.19298 0.91782 1.01766 0.96512 1.21277 0.97856 0.98892 0.94553 1.21451 0.92528 0.99947 1.00883 1.21537 1.00376 0.96917 0.94587 1.21377 0.96332 1.00266 0.96972 1.21040 0.93135 0.97592 0.99901 0.92331 0.87778 0.92035 0.91360 0.90816 0.89258 0.91167 0.90410 0.81999 0.89343 0.94892 0.94362 0.91613 0.94898 0.99226 0.99492 0.93054 0.84507 0.83870 0.83558 0.84040 0.86396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 10.29 71.98 0.74 -2.57 16 2 C 0.05 1.29 6.19 71.98 0.45 1.73 16 3 O -0.35 -10.53 6.81 -51.41 -0.35 -10.88 16 4 C 0.48 14.51 6.78 71.24 0.48 14.99 16 5 O -0.53 -17.22 15.02 21.94 0.33 -16.89 16 6 C 0.17 4.41 0.79 2.04 0.00 4.41 16 7 C -0.18 -4.10 7.73 71.98 0.56 -3.54 16 8 N -0.66 -18.08 4.61 -477.65 -2.20 -20.28 16 9 C 0.06 1.96 4.25 86.30 0.37 2.32 16 10 C -0.07 -2.83 2.43 -10.79 -0.03 -2.85 16 11 H 0.06 2.18 8.11 -2.39 -0.02 2.16 16 12 C -0.11 -4.22 8.89 71.98 0.64 -3.58 16 13 C 0.04 1.90 4.45 29.85 0.13 2.04 16 14 C -0.53 -29.28 8.41 25.60 0.22 -29.07 16 15 H 0.06 3.25 7.06 -2.91 -0.02 3.23 16 16 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 17 N -0.93 -56.57 13.29 21.44 0.28 -56.29 16 18 Si 0.96 44.06 29.54 68.60 2.03 46.09 16 19 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 20 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 21 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 22 C -0.09 -2.27 4.48 -19.87 -0.09 -2.36 16 23 C -0.11 -2.41 9.06 22.27 0.20 -2.20 16 24 C -0.13 -2.41 10.05 22.27 0.22 -2.19 16 25 C -0.12 -1.97 10.05 22.27 0.22 -1.74 16 26 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 27 C -0.10 -2.23 8.03 22.27 0.18 -2.05 16 28 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.10 1.69 8.14 -2.39 -0.02 1.68 16 30 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.07 1.66 8.13 -2.39 -0.02 1.64 16 32 H 0.07 1.69 8.13 -2.39 -0.02 1.67 16 33 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 34 H 0.07 1.77 6.19 -2.39 -0.01 1.76 16 35 H 0.08 1.61 6.97 -2.39 -0.02 1.60 16 36 H 0.36 8.77 7.45 -89.69 -0.67 8.10 16 37 H 0.09 3.20 5.14 -2.38 -0.01 3.19 16 38 H 0.03 1.11 5.85 -2.39 -0.01 1.10 16 39 H 0.04 1.52 6.95 -2.39 -0.02 1.50 16 40 H 0.06 2.10 7.75 -2.39 -0.02 2.08 16 41 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 42 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 43 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 44 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.14 2.98 6.54 -2.91 -0.02 2.96 16 46 H 0.14 1.97 8.06 -2.91 -0.02 1.94 16 47 H 0.15 1.63 8.06 -2.91 -0.02 1.60 16 48 H 0.14 1.95 8.06 -2.91 -0.02 1.92 16 49 H 0.12 2.62 7.01 -2.91 -0.02 2.60 16 Total: -1.00 -67.23 388.74 5.34 -61.90 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.27 Total: 24.81 kcal Atomic # 6 Polarization: -33.45 SS G_CDS: 4.98 Total: -28.47 kcal Atomic # 7 Polarization: -74.65 SS G_CDS: -1.92 Total: -76.56 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.02 Total: -27.77 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Total: -67.23 5.34 -61.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895893109.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.801 kcal (2) G-P(sol) polarization free energy of solvation -67.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds