Wall clock time and date at job start Tue Mar 31 2020 13:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.46754 * 2 1 4 4 C 1.34233 * 116.99872 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99890 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99777 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.47292 * 204.99890 * 6 4 3 8 8 N 1.46897 * 109.47710 * 325.00048 * 6 4 3 9 9 C 1.46905 * 111.00138 * 300.00436 * 8 6 4 10 10 C 1.52999 * 109.47028 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.46929 * 304.98924 * 10 9 8 12 12 C 1.52997 * 109.47317 * 64.99820 * 10 9 8 13 13 C 1.53006 * 109.46623 * 184.99640 * 10 9 8 14 14 C 1.50703 * 109.46967 * 174.99771 * 13 10 9 15 15 H 1.07996 * 119.99755 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00135 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99773 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99975 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47559 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47225 * 120.00279 * 18 16 14 21 21 H 1.48505 * 109.47115 * 239.99990 * 18 16 14 22 22 C 1.50699 * 109.46991 * 85.00409 * 6 4 3 23 23 C 1.38243 * 119.99995 * 239.72174 * 22 6 4 24 24 C 1.38227 * 120.00099 * 179.78276 * 23 22 6 25 25 C 1.38239 * 119.99965 * 0.45197 * 24 23 22 26 26 C 1.38239 * 120.00157 * 359.80282 * 25 24 23 27 27 C 1.38233 * 119.99485 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.46887 * 299.99249 * 1 2 3 29 29 H 1.09002 * 109.47859 * 60.00124 * 1 2 3 30 30 H 1.08999 * 109.46866 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46887 * 240.00751 * 2 1 3 32 32 H 1.08989 * 109.47712 * 119.99982 * 2 1 3 33 33 H 1.08992 * 109.47613 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46897 * 300.00836 * 7 6 4 35 35 H 1.09002 * 109.46772 * 59.99911 * 7 6 4 36 36 H 1.00906 * 110.99758 * 63.95309 * 8 6 4 37 37 H 1.08994 * 109.47305 * 59.99331 * 9 8 6 38 38 H 1.08998 * 109.46287 * 299.99779 * 9 8 6 39 39 H 1.09002 * 109.47153 * 299.99641 * 12 10 9 40 40 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 41 41 H 1.09004 * 109.47261 * 59.99813 * 12 10 9 42 42 H 1.09001 * 109.47326 * 294.99995 * 13 10 9 43 43 H 1.09000 * 109.46904 * 55.00348 * 13 10 9 44 44 H 0.97000 * 120.00259 * 179.97438 * 17 16 14 45 45 H 1.08003 * 119.99922 * 0.02562 * 23 22 6 46 46 H 1.07997 * 120.00233 * 180.27706 * 24 23 22 47 47 H 1.08004 * 120.00248 * 179.83496 * 25 24 23 48 48 H 1.08001 * 120.00089 * 180.02562 * 26 25 24 49 49 H 1.08003 * 119.99491 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9205 2.9375 -0.0012 7 6 5.3234 2.9091 -0.6113 8 7 3.0591 3.8234 -0.7954 9 6 2.9592 3.3544 -2.1840 10 6 2.0555 4.2999 -2.9779 11 1 1.0909 4.3856 -2.4779 12 6 2.7106 5.6799 -3.0630 13 6 1.8510 3.7446 -4.3889 14 6 0.8644 4.6092 -5.1308 15 1 0.4274 5.4688 -4.6446 16 6 0.5204 4.3032 -6.4304 17 7 1.0530 3.2566 -7.0225 18 14 -0.7019 5.3752 -7.3501 19 1 -1.1511 6.4823 -6.4682 20 1 -0.0527 5.9396 -8.5606 21 1 -1.8734 4.5563 -7.7531 22 6 3.9987 3.4494 1.4141 23 6 3.3163 4.5969 1.7727 24 6 3.3843 5.0640 3.0719 25 6 4.1422 4.3888 4.0104 26 6 4.8289 3.2442 3.6505 27 6 4.7571 2.7746 2.3523 28 1 -0.3633 0.5137 0.8901 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 5.7401 3.9162 -0.6113 34 1 5.9626 2.2517 -0.0219 35 1 5.2669 2.5388 -1.6349 36 1 2.1452 3.9100 -0.3765 37 1 2.5360 2.3501 -2.1987 38 1 3.9519 3.3370 -2.6337 39 1 2.8564 6.0755 -2.0578 40 1 2.0669 6.3533 -3.6290 41 1 3.6753 5.5941 -3.5631 42 1 2.8029 3.7419 -4.9199 43 1 1.4668 2.7265 -4.3265 44 1 0.8108 3.0411 -7.9368 45 1 2.7268 5.1263 1.0388 46 1 2.8476 5.9579 3.3532 47 1 4.1975 4.7551 5.0249 48 1 5.4207 2.7165 4.3838 49 1 5.2932 1.8802 2.0713 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000895893110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:34 Heat of formation + Delta-G solvation = -75.202634 kcal Electronic energy + Delta-G solvation = -27836.516464 eV Core-core repulsion = 24149.024235 eV Total energy + Delta-G solvation = -3687.492230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10404 -39.27719 -37.26067 -36.64030 -34.80699 -32.44541 -31.70682 -31.21735 -30.66428 -28.97947 -26.84630 -25.88764 -24.67330 -23.32575 -22.75015 -22.06215 -22.00542 -19.80925 -19.28126 -17.75862 -17.30405 -16.73118 -16.48567 -16.28280 -15.48551 -15.09410 -14.55059 -14.45408 -14.32272 -13.95224 -13.91497 -13.63180 -13.43087 -12.93195 -12.87271 -12.64835 -12.45112 -12.26609 -12.11731 -11.98179 -11.88018 -11.70342 -11.50992 -11.43103 -11.17493 -11.08617 -10.90072 -10.80821 -10.56381 -10.50475 -10.28553 -10.24856 -9.70137 -9.17763 -9.04484 -8.96395 -8.92111 -8.39949 -8.33215 -5.97649 -3.98760 1.12343 1.28287 2.16987 2.59523 3.31943 3.39727 3.43522 3.64300 4.05789 4.46609 4.49510 4.60886 4.78396 4.86234 4.86940 4.92043 4.98424 5.01997 5.18565 5.35183 5.38362 5.46341 5.55799 5.62329 5.66268 5.72063 5.72961 5.81288 5.84588 5.92226 5.94299 6.06697 6.15873 6.29177 6.33798 6.38223 6.41900 6.45871 6.52094 6.65129 6.84122 6.92323 7.10084 7.15202 7.23572 7.44041 7.69373 7.71182 7.84398 8.02402 8.45973 9.07815 9.64723 11.13928 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.003399 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.329812 B = 8236.644065 C = 9073.453371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.353 6.353 4 C 0.443 3.557 5 O -0.509 6.509 6 C 0.173 3.827 7 C -0.129 4.129 8 N -0.659 5.659 9 C 0.056 3.944 10 C -0.079 4.079 11 H 0.056 0.944 12 C -0.124 4.124 13 C 0.028 3.972 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.055 3.945 17 N -0.897 5.897 18 Si 0.889 3.111 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.078 4.078 23 C -0.088 4.088 24 C -0.122 4.122 25 C -0.118 4.118 26 C -0.123 4.123 27 C -0.111 4.111 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.351 0.649 37 H 0.029 0.971 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.040 0.960 42 H 0.016 0.984 43 H 0.012 0.988 44 H 0.259 0.741 45 H 0.140 0.860 46 H 0.124 0.876 47 H 0.120 0.880 48 H 0.121 0.879 49 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.053 -1.675 21.650 22.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.269 6.269 4 C 0.283 3.717 5 O -0.395 6.395 6 C 0.079 3.921 7 C -0.186 4.186 8 N -0.292 5.292 9 C -0.072 4.072 10 C -0.098 4.098 11 H 0.074 0.926 12 C -0.181 4.181 13 C -0.010 4.010 14 C -0.549 4.549 15 H 0.075 0.925 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.717 3.283 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.212 1.212 22 C -0.079 4.079 23 C -0.106 4.106 24 C -0.140 4.140 25 C -0.136 4.136 26 C -0.141 4.141 27 C -0.129 4.129 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.171 0.829 37 H 0.047 0.953 38 H 0.092 0.908 39 H 0.061 0.939 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.068 0.932 45 H 0.158 0.842 46 H 0.142 0.858 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.739 -1.646 21.333 22.153 hybrid contribution -1.218 -0.618 -0.571 1.481 sum 4.520 -2.264 20.762 21.369 Atomic orbital electron populations 1.21808 0.92399 1.02928 1.03872 1.23022 0.95639 0.80184 1.02283 1.86531 1.24414 1.32540 1.83463 1.25121 0.80917 0.93835 0.71807 1.90615 1.60467 1.43239 1.45185 1.19843 0.96093 0.83482 0.92716 1.21836 0.91752 1.03621 1.01388 1.60807 1.17957 1.47342 1.03100 1.22363 1.01202 0.97222 0.86441 1.21174 0.96203 0.94473 0.97933 0.92573 1.21606 0.99866 0.96964 0.99661 1.19115 0.96938 0.95897 0.89014 1.21259 1.24538 1.11540 0.97592 0.92460 1.25020 0.96491 0.95283 0.97772 1.69977 1.43852 1.26791 1.13026 0.86582 0.81203 0.80613 0.79883 1.19722 1.21109 1.21151 1.19382 0.99198 0.96745 0.92530 1.21150 0.97959 0.95186 0.96271 1.21194 0.99419 1.00144 0.93283 1.21199 0.97283 0.95657 0.99489 1.21061 1.00144 0.96928 0.95950 1.21067 0.98652 0.99911 0.93267 0.91604 0.90854 0.90330 0.91169 0.91611 0.89919 0.91119 0.91147 0.82907 0.95299 0.90775 0.93869 0.92655 0.94081 0.96562 0.96990 0.93167 0.84241 0.85783 0.86174 0.86065 0.85900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.29 37.16 0.38 -1.18 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.35 -5.18 9.02 -39.27 -0.35 -5.53 16 4 C 0.44 6.71 5.16 36.00 0.19 6.89 16 5 O -0.51 -8.54 15.84 -18.74 -0.30 -8.84 16 6 C 0.17 2.32 0.76 -133.91 -0.10 2.22 16 7 C -0.13 -1.66 7.58 37.16 0.28 -1.38 16 8 N -0.66 -9.26 4.43 -102.33 -0.45 -9.72 16 9 C 0.06 0.95 4.34 -3.82 -0.02 0.93 16 10 C -0.08 -1.56 2.48 -90.62 -0.22 -1.79 16 11 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 12 C -0.12 -2.30 8.89 37.16 0.33 -1.97 16 13 C 0.03 0.71 4.45 -27.88 -0.12 0.58 16 14 C -0.51 -14.14 8.41 -34.44 -0.29 -14.43 16 15 H 0.06 1.54 7.05 -52.49 -0.37 1.17 16 16 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 17 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 18 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 22 C -0.08 -0.95 4.76 -104.62 -0.50 -1.45 16 23 C -0.09 -0.97 9.14 -39.58 -0.36 -1.34 16 24 C -0.12 -1.17 10.05 -39.59 -0.40 -1.57 16 25 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 26 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 27 C -0.11 -1.26 8.82 -39.59 -0.35 -1.61 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.92 8.13 -51.93 -0.42 0.50 16 32 H 0.07 0.76 8.13 -51.94 -0.42 0.34 16 33 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.07 0.86 7.12 -51.93 -0.37 0.49 16 35 H 0.07 0.98 6.40 -51.93 -0.33 0.65 16 36 H 0.35 4.77 7.22 -39.29 -0.28 4.49 16 37 H 0.03 0.53 6.64 -51.93 -0.34 0.19 16 38 H 0.07 1.29 6.30 -51.93 -0.33 0.96 16 39 H 0.04 0.70 7.75 -51.93 -0.40 0.29 16 40 H 0.05 1.11 6.95 -51.93 -0.36 0.75 16 41 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 44 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 45 H 0.14 1.51 6.41 -52.48 -0.34 1.17 16 46 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 47 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 48 H 0.12 0.91 8.06 -52.49 -0.42 0.48 16 49 H 0.12 1.40 7.58 -52.48 -0.40 1.00 16 LS Contribution 393.63 15.07 5.93 5.93 Total: -1.00 -31.22 393.63 -9.46 -40.68 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.16 Total: 3.72 kcal Atomic # 6 Polarization: -14.80 SS G_CDS: -1.85 Total: -16.64 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.28 Total: -35.88 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -0.65 Total: -14.37 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.22 -9.46 -40.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895893110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.518 kcal (2) G-P(sol) polarization free energy of solvation -31.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds