Wall clock time and date at job start Tue Mar 31 2020 13:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45205 * 109.46754 * 2 1 4 4 C 1.34233 * 116.99872 * 180.02562 * 3 2 1 5 5 O 1.20820 * 119.99890 * 0.02562 * 4 3 2 6 6 C 1.50693 * 119.99777 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.47292 * 204.99890 * 6 4 3 8 8 N 1.46897 * 109.47710 * 325.00048 * 6 4 3 9 9 C 1.46905 * 111.00138 * 300.00436 * 8 6 4 10 10 C 1.52999 * 109.47028 * 179.97438 * 9 8 6 11 11 H 1.08996 * 109.46929 * 304.98924 * 10 9 8 12 12 C 1.52997 * 109.47317 * 64.99820 * 10 9 8 13 13 C 1.53006 * 109.46623 * 184.99640 * 10 9 8 14 14 C 1.50703 * 109.46967 * 174.99771 * 13 10 9 15 15 H 1.07996 * 119.99755 * 0.02562 * 14 13 10 16 16 C 1.37876 * 120.00135 * 179.97438 * 14 13 10 17 17 N 1.31512 * 119.99773 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 119.99975 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.47559 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47225 * 120.00279 * 18 16 14 21 21 H 1.48505 * 109.47115 * 239.99990 * 18 16 14 22 22 C 1.50699 * 109.46991 * 85.00409 * 6 4 3 23 23 C 1.38243 * 119.99995 * 239.72174 * 22 6 4 24 24 C 1.38227 * 120.00099 * 179.78276 * 23 22 6 25 25 C 1.38239 * 119.99965 * 0.45197 * 24 23 22 26 26 C 1.38239 * 120.00157 * 359.80282 * 25 24 23 27 27 C 1.38233 * 119.99485 * 359.97438 * 26 25 24 28 28 H 1.09002 * 109.46887 * 299.99249 * 1 2 3 29 29 H 1.09002 * 109.47859 * 60.00124 * 1 2 3 30 30 H 1.08999 * 109.46866 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46887 * 240.00751 * 2 1 3 32 32 H 1.08989 * 109.47712 * 119.99982 * 2 1 3 33 33 H 1.08992 * 109.47613 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46897 * 300.00836 * 7 6 4 35 35 H 1.09002 * 109.46772 * 59.99911 * 7 6 4 36 36 H 1.00906 * 110.99758 * 63.95309 * 8 6 4 37 37 H 1.08994 * 109.47305 * 59.99331 * 9 8 6 38 38 H 1.08998 * 109.46287 * 299.99779 * 9 8 6 39 39 H 1.09002 * 109.47153 * 299.99641 * 12 10 9 40 40 H 1.09001 * 109.46832 * 179.97438 * 12 10 9 41 41 H 1.09004 * 109.47261 * 59.99813 * 12 10 9 42 42 H 1.09001 * 109.47326 * 294.99995 * 13 10 9 43 43 H 1.09000 * 109.46904 * 55.00348 * 13 10 9 44 44 H 0.97000 * 120.00259 * 179.97438 * 17 16 14 45 45 H 1.08003 * 119.99922 * 0.02562 * 23 22 6 46 46 H 1.07997 * 120.00233 * 180.27706 * 24 23 22 47 47 H 1.08004 * 120.00248 * 179.83496 * 25 24 23 48 48 H 1.08001 * 120.00089 * 180.02562 * 26 25 24 49 49 H 1.08003 * 119.99491 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5450 -0.0005 5 8 4.0807 0.5868 -0.0015 6 6 3.9205 2.9375 -0.0012 7 6 5.3234 2.9091 -0.6113 8 7 3.0591 3.8234 -0.7954 9 6 2.9592 3.3544 -2.1840 10 6 2.0555 4.2999 -2.9779 11 1 1.0909 4.3856 -2.4779 12 6 2.7106 5.6799 -3.0630 13 6 1.8510 3.7446 -4.3889 14 6 0.8644 4.6092 -5.1308 15 1 0.4274 5.4688 -4.6446 16 6 0.5204 4.3032 -6.4304 17 7 1.0530 3.2566 -7.0225 18 14 -0.7019 5.3752 -7.3501 19 1 -1.1511 6.4823 -6.4682 20 1 -0.0527 5.9396 -8.5606 21 1 -1.8734 4.5563 -7.7531 22 6 3.9987 3.4494 1.4141 23 6 3.3163 4.5969 1.7727 24 6 3.3843 5.0640 3.0719 25 6 4.1422 4.3888 4.0104 26 6 4.8289 3.2442 3.6505 27 6 4.7571 2.7746 2.3523 28 1 -0.3633 0.5137 0.8901 29 1 -0.3635 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8899 33 1 5.7401 3.9162 -0.6113 34 1 5.9626 2.2517 -0.0219 35 1 5.2669 2.5388 -1.6349 36 1 2.1452 3.9100 -0.3765 37 1 2.5360 2.3501 -2.1987 38 1 3.9519 3.3370 -2.6337 39 1 2.8564 6.0755 -2.0578 40 1 2.0669 6.3533 -3.6290 41 1 3.6753 5.5941 -3.5631 42 1 2.8029 3.7419 -4.9199 43 1 1.4668 2.7265 -4.3265 44 1 0.8108 3.0411 -7.9368 45 1 2.7268 5.1263 1.0388 46 1 2.8476 5.9579 3.3532 47 1 4.1975 4.7551 5.0249 48 1 5.4207 2.7165 4.3838 49 1 5.2932 1.8802 2.0713 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000895893110.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:40:33 Heat of formation + Delta-G solvation = -91.004107 kcal Electronic energy + Delta-G solvation = -27837.201667 eV Core-core repulsion = 24149.024235 eV Total energy + Delta-G solvation = -3688.177433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.23087 -40.18483 -38.50350 -37.87843 -36.34109 -34.36054 -32.65756 -32.24722 -31.65891 -30.03418 -28.74728 -27.19317 -26.01794 -24.72222 -23.83499 -23.15744 -22.98946 -20.91115 -20.87941 -18.91089 -18.53129 -18.20775 -17.89453 -17.52534 -16.59483 -16.34556 -16.06529 -15.75305 -15.38708 -15.13213 -15.05617 -14.79181 -14.41455 -14.34091 -14.08836 -13.80434 -13.64488 -13.48624 -13.32530 -13.29719 -13.05394 -12.96431 -12.78452 -12.73617 -12.64876 -12.58827 -12.19600 -12.17971 -12.03073 -11.83251 -11.69878 -11.62527 -11.40831 -11.07725 -10.93084 -10.53374 -9.83917 -9.76169 -9.61440 -8.16435 -6.25450 0.31665 0.51399 0.99404 1.40925 1.41652 1.53187 1.54612 2.42826 2.85277 2.89094 3.17515 3.47991 3.53726 3.83663 3.89198 3.97011 4.10265 4.11253 4.18547 4.21315 4.26532 4.34577 4.49058 4.56696 4.61054 4.68124 4.72063 4.73602 4.83165 4.86105 4.90461 5.00080 5.03215 5.05807 5.10811 5.18259 5.29572 5.34325 5.47123 5.50056 5.54811 5.56617 5.60265 5.65010 5.79203 5.84407 5.89497 6.10130 6.21697 6.30665 6.53614 6.90935 7.43058 8.96028 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.014449 B = 0.003399 C = 0.003085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.329812 B = 8236.644065 C = 9073.453371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 O -0.361 6.361 4 C 0.440 3.560 5 O -0.532 6.532 6 C 0.176 3.824 7 C -0.127 4.127 8 N -0.644 5.644 9 C 0.071 3.929 10 C -0.068 4.068 11 H 0.058 0.942 12 C -0.114 4.114 13 C 0.033 3.967 14 C -0.524 4.524 15 H 0.065 0.935 16 C -0.004 4.004 17 N -0.937 5.937 18 Si 0.961 3.039 19 H -0.259 1.259 20 H -0.281 1.281 21 H -0.281 1.281 22 C -0.093 4.093 23 C -0.098 4.098 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.124 4.124 27 C -0.124 4.124 28 H 0.075 0.925 29 H 0.057 0.943 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.054 0.946 36 H 0.356 0.644 37 H 0.010 0.990 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.040 0.960 41 H 0.035 0.965 42 H -0.011 1.011 43 H -0.019 1.019 44 H 0.261 0.739 45 H 0.140 0.860 46 H 0.147 0.853 47 H 0.149 0.851 48 H 0.143 0.857 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.386 0.101 23.964 24.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.019 4.019 3 O -0.278 6.278 4 C 0.281 3.719 5 O -0.420 6.420 6 C 0.082 3.918 7 C -0.184 4.184 8 N -0.277 5.277 9 C -0.057 4.057 10 C -0.087 4.087 11 H 0.077 0.923 12 C -0.171 4.171 13 C -0.004 4.004 14 C -0.562 4.562 15 H 0.083 0.917 16 C -0.201 4.201 17 N -0.578 5.578 18 Si 0.786 3.214 19 H -0.183 1.183 20 H -0.207 1.207 21 H -0.207 1.207 22 C -0.093 4.093 23 C -0.116 4.116 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.142 4.142 27 C -0.143 4.143 28 H 0.094 0.906 29 H 0.076 0.924 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.073 0.927 36 H 0.177 0.823 37 H 0.028 0.972 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.007 0.993 43 H -0.001 1.001 44 H 0.070 0.930 45 H 0.158 0.842 46 H 0.165 0.835 47 H 0.167 0.833 48 H 0.160 0.840 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.061 0.144 23.668 24.204 hybrid contribution -0.989 -1.226 -1.215 1.990 sum 4.072 -1.083 22.453 22.845 Atomic orbital electron populations 1.21814 0.90473 1.04446 1.03534 1.23254 0.97178 0.79316 1.02144 1.86530 1.24230 1.33805 1.83197 1.25523 0.80963 0.94327 0.71050 1.90593 1.60914 1.44064 1.46390 1.19882 0.95633 0.82401 0.93846 1.21835 0.91873 1.04294 1.00447 1.60732 1.18408 1.46986 1.01535 1.22023 1.00074 0.95543 0.88106 1.20958 0.97221 0.95629 0.94918 0.92329 1.21508 0.98931 0.95497 1.01171 1.19000 0.94926 0.94357 0.92131 1.21658 1.24689 1.11802 0.98058 0.91719 1.25960 0.98525 0.96631 0.98939 1.70119 1.45537 1.28691 1.13493 0.85454 0.78528 0.78956 0.78467 1.18257 1.20706 1.20714 1.19291 1.00749 0.97748 0.91548 1.21240 0.98127 0.94987 0.97278 1.21502 0.99208 1.00765 0.92568 1.21572 0.96028 0.94910 1.00740 1.21354 1.00111 0.97244 0.95504 1.21109 0.99035 0.99948 0.94162 0.90561 0.92426 0.87916 0.92480 0.90602 0.88816 0.90601 0.92738 0.82326 0.97176 0.91128 0.90808 0.94118 0.94577 0.99297 1.00099 0.93043 0.84231 0.83483 0.83309 0.83958 0.86737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 10.29 71.98 0.74 -2.15 16 2 C 0.05 1.38 6.19 71.98 0.45 1.82 16 3 O -0.36 -10.78 9.02 -51.45 -0.46 -11.25 16 4 C 0.44 13.60 5.16 71.23 0.37 13.97 16 5 O -0.53 -18.39 15.84 21.98 0.35 -18.04 16 6 C 0.18 4.72 0.76 2.03 0.00 4.72 16 7 C -0.13 -3.32 7.58 71.98 0.55 -2.77 16 8 N -0.64 -17.82 4.43 -477.66 -2.12 -19.94 16 9 C 0.07 2.49 4.34 86.30 0.37 2.86 16 10 C -0.07 -2.74 2.48 -10.79 -0.03 -2.77 16 11 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 12 C -0.11 -4.14 8.89 71.98 0.64 -3.50 16 13 C 0.03 1.76 4.45 29.85 0.13 1.89 16 14 C -0.52 -29.41 8.41 25.60 0.22 -29.19 16 15 H 0.06 3.46 7.05 -2.91 -0.02 3.44 16 16 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 17 N -0.94 -57.67 13.29 21.45 0.28 -57.39 16 18 Si 0.96 44.38 29.54 68.60 2.03 46.40 16 19 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 22 C -0.09 -2.16 4.76 -19.86 -0.09 -2.25 16 23 C -0.10 -2.00 9.14 22.27 0.20 -1.79 16 24 C -0.12 -1.97 10.05 22.27 0.22 -1.75 16 25 C -0.11 -1.68 10.05 22.27 0.22 -1.45 16 26 C -0.12 -2.09 10.05 22.27 0.22 -1.87 16 27 C -0.12 -2.68 8.82 22.27 0.20 -2.49 16 28 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 32 H 0.08 1.75 8.13 -2.39 -0.02 1.73 16 33 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.08 1.87 7.12 -2.39 -0.02 1.86 16 35 H 0.05 1.57 6.40 -2.39 -0.02 1.55 16 36 H 0.36 9.40 7.22 -89.69 -0.65 8.75 16 37 H 0.01 0.39 6.64 -2.39 -0.02 0.37 16 38 H 0.07 2.53 6.30 -2.39 -0.02 2.51 16 39 H 0.07 2.23 7.75 -2.39 -0.02 2.21 16 40 H 0.04 1.58 6.95 -2.39 -0.02 1.57 16 41 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 42 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 43 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 44 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 45 H 0.14 2.75 6.41 -2.91 -0.02 2.73 16 46 H 0.15 1.64 8.06 -2.91 -0.02 1.62 16 47 H 0.15 1.31 8.06 -2.91 -0.02 1.29 16 48 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 49 H 0.11 2.60 7.58 -2.91 -0.02 2.58 16 Total: -1.00 -68.62 393.63 5.23 -63.39 By element: Atomic # 1 Polarization: 23.00 SS G_CDS: 0.28 Total: 23.28 kcal Atomic # 6 Polarization: -31.34 SS G_CDS: 4.88 Total: -26.46 kcal Atomic # 7 Polarization: -75.49 SS G_CDS: -1.83 Total: -77.32 kcal Atomic # 8 Polarization: -29.17 SS G_CDS: -0.12 Total: -29.29 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -68.62 5.23 -63.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000895893110.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.614 kcal (2) G-P(sol) polarization free energy of solvation -68.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds