Wall clock time and date at job start Tue Mar 31 2020 13:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47057 * 2 1 4 4 C 1.34781 * 120.00216 * 268.91540 * 3 2 1 5 5 O 1.21277 * 119.99686 * 180.02562 * 4 3 2 6 6 C 1.50693 * 119.99773 * 0.02562 * 4 3 2 7 7 C 1.53002 * 109.47003 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46872 * 180.02562 * 7 6 4 9 9 C 1.53013 * 109.46895 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47026 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00350 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00145 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00343 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99804 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46789 * 90.00059 * 14 12 10 16 16 H 1.48493 * 109.47078 * 210.00741 * 14 12 10 17 17 H 1.48507 * 109.46979 * 330.00587 * 14 12 10 18 18 C 1.46503 * 119.99940 * 88.92343 * 3 2 1 19 19 H 1.09002 * 109.46527 * 237.29476 * 18 3 2 20 20 C 1.53004 * 109.46904 * 357.28609 * 18 3 2 21 21 O 1.42900 * 109.47108 * 67.49226 * 20 18 3 22 22 C 1.50694 * 109.47736 * 117.28975 * 18 3 2 23 23 C 1.38242 * 119.99746 * 322.21892 * 22 18 3 24 24 C 1.38231 * 120.00004 * 179.80724 * 23 22 18 25 25 C 1.38241 * 119.99582 * 0.39973 * 24 23 22 26 26 C 1.38231 * 120.00141 * 359.85498 * 25 24 23 27 27 C 1.38226 * 120.00128 * 359.95569 * 26 25 24 28 28 H 1.09000 * 109.47256 * 65.99283 * 1 2 3 29 29 H 1.08998 * 109.47199 * 185.99183 * 1 2 3 30 30 H 1.08996 * 109.47050 * 305.99376 * 1 2 3 31 31 H 1.09002 * 109.47192 * 240.00399 * 2 1 3 32 32 H 1.08999 * 109.47013 * 120.00346 * 2 1 3 33 33 H 1.09003 * 109.47160 * 299.99837 * 6 4 3 34 34 H 1.09001 * 109.47347 * 59.99955 * 6 4 3 35 35 H 1.09005 * 109.47197 * 299.99394 * 7 6 4 36 36 H 1.08995 * 109.47532 * 59.99985 * 7 6 4 37 37 H 1.09000 * 109.47176 * 299.98911 * 8 7 6 38 38 H 1.09001 * 109.47487 * 59.99884 * 8 7 6 39 39 H 1.08994 * 109.47010 * 299.99736 * 9 8 7 40 40 H 1.09001 * 109.46878 * 59.99841 * 9 8 7 41 41 H 0.96997 * 119.99993 * 179.97438 * 13 12 10 42 42 H 1.08998 * 109.46845 * 307.48869 * 20 18 3 43 43 H 1.09000 * 109.46957 * 187.49247 * 20 18 3 44 44 H 0.96699 * 113.99796 * 180.02562 * 21 20 18 45 45 H 1.07998 * 119.99659 * 359.97438 * 23 22 18 46 46 H 1.08000 * 120.00351 * 180.23060 * 24 23 22 47 47 H 1.08010 * 119.99622 * 179.83361 * 25 24 23 48 48 H 1.08001 * 119.99567 * 179.97438 * 26 25 24 49 49 H 1.08008 * 119.99918 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2637 2.0092 -1.1670 5 8 2.6684 3.1525 -1.1669 6 6 2.0353 1.2908 -2.4718 7 6 2.3882 2.2206 -3.6345 8 6 2.1557 1.4914 -4.9593 9 6 2.5080 2.4215 -6.1221 10 6 2.2796 1.7031 -7.4269 11 1 1.9188 0.6851 -7.4270 12 6 2.5312 2.3453 -8.6208 13 7 2.3314 1.7185 -9.7596 14 14 3.1545 4.1063 -8.6207 15 1 4.6393 4.1057 -8.5939 16 1 2.6817 4.7988 -9.8463 17 1 2.6381 4.8142 -7.4217 18 6 2.2400 2.0798 1.2685 19 1 1.6449 2.9928 1.2892 20 6 1.8240 1.1737 2.4291 21 8 2.7166 0.0605 2.5079 22 6 3.7000 2.4284 1.4017 23 6 4.6650 1.5449 0.9555 24 6 6.0042 1.8663 1.0740 25 6 6.3785 3.0678 1.6463 26 6 5.4136 3.9489 2.0972 27 6 4.0744 3.6291 1.9752 28 1 -0.3634 0.4181 -0.9388 29 1 -0.3633 -1.0220 0.1073 30 1 -0.3633 0.6039 0.8314 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.6661 0.4028 -2.5129 34 1 0.9884 0.9966 -2.5462 35 1 1.7577 3.1089 -3.5937 36 1 3.4352 2.5144 -3.5600 37 1 2.7859 0.6030 -5.0005 38 1 1.1086 1.1980 -5.0337 39 1 1.8776 3.3097 -6.0807 40 1 3.5551 2.7153 -6.0479 41 1 2.5080 2.1705 -10.5994 42 1 0.8085 0.8141 2.2634 43 1 1.8624 1.7369 3.3616 44 1 2.5122 -0.5576 3.2229 45 1 4.3725 0.6047 0.5118 46 1 6.7581 1.1778 0.7220 47 1 7.4250 3.3178 1.7413 48 1 5.7062 4.8873 2.5447 49 1 3.3205 4.3178 2.3272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000922086119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:56 Heat of formation + Delta-G solvation = -69.071458 kcal Electronic energy + Delta-G solvation = -27301.151077 eV Core-core repulsion = 23613.924715 eV Total energy + Delta-G solvation = -3687.226362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.71347 -38.84286 -37.67499 -35.60084 -35.00596 -33.04878 -32.34252 -30.92347 -30.27627 -29.88009 -28.65432 -25.88168 -24.04725 -23.17347 -22.60104 -22.14465 -20.78317 -19.98304 -18.84585 -18.08122 -17.37577 -16.64454 -16.54965 -16.43022 -15.77064 -15.26874 -14.96503 -14.67857 -14.29936 -14.20556 -13.96262 -13.64852 -13.50794 -13.34776 -13.26783 -12.77323 -12.63857 -12.44434 -12.21068 -12.14664 -12.09022 -11.79417 -11.65015 -11.50440 -11.08233 -11.04544 -11.02153 -10.66567 -10.49018 -10.36154 -9.85054 -9.71449 -9.60413 -9.35792 -9.08350 -8.91297 -8.86410 -8.62792 -8.46391 -5.97796 -3.94966 1.31098 1.42664 2.76200 2.86086 3.37951 3.44630 3.51348 3.66135 3.84754 4.42513 4.49797 4.52992 4.75086 4.75267 4.82490 4.91333 4.95770 4.99979 5.07743 5.12046 5.23701 5.29608 5.30572 5.36709 5.40292 5.48799 5.54690 5.61117 5.64499 5.80309 5.92654 6.00503 6.03388 6.09304 6.20469 6.36150 6.42051 6.47293 6.50066 6.64251 6.74004 6.87681 6.97924 7.03740 7.12608 7.36283 7.42622 7.55284 7.88085 8.28915 8.61548 9.07359 9.65859 11.15765 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.002900 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.304643 B = 9653.051120 C =10854.904738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.084 3.916 3 N -0.610 5.610 4 C 0.513 3.487 5 O -0.527 6.527 6 C -0.136 4.136 7 C -0.106 4.106 8 C -0.102 4.102 9 C -0.015 4.015 10 C -0.518 4.518 11 H 0.071 0.929 12 C 0.065 3.935 13 N -0.907 5.907 14 Si 0.879 3.121 15 H -0.277 1.277 16 H -0.288 1.288 17 H -0.264 1.264 18 C 0.192 3.808 19 H 0.092 0.908 20 C 0.071 3.929 21 O -0.556 6.556 22 C -0.077 4.077 23 C -0.078 4.078 24 C -0.126 4.126 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.109 4.109 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.055 0.945 31 H 0.079 0.921 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.015 0.985 40 H 0.011 0.989 41 H 0.262 0.738 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.378 0.622 45 H 0.118 0.882 46 H 0.118 0.882 47 H 0.117 0.883 48 H 0.118 0.882 49 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.383 -3.741 32.370 32.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.039 4.039 3 N -0.345 5.345 4 C 0.302 3.698 5 O -0.402 6.402 6 C -0.176 4.176 7 C -0.144 4.144 8 C -0.139 4.139 9 C -0.053 4.053 10 C -0.556 4.556 11 H 0.089 0.911 12 C -0.136 4.136 13 N -0.546 5.546 14 Si 0.706 3.294 15 H -0.203 1.203 16 H -0.215 1.215 17 H -0.189 1.189 18 C 0.088 3.912 19 H 0.110 0.890 20 C -0.007 4.007 21 O -0.362 6.362 22 C -0.078 4.078 23 C -0.096 4.096 24 C -0.144 4.144 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.127 4.127 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.125 0.875 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.033 0.967 40 H 0.029 0.971 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.226 0.774 45 H 0.137 0.863 46 H 0.136 0.864 47 H 0.135 0.865 48 H 0.136 0.864 49 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 0.103 -2.795 31.652 31.775 hybrid contribution 0.017 0.616 0.264 0.670 sum 0.120 -2.179 31.916 31.991 Atomic orbital electron populations 1.22315 0.96301 1.02118 1.02489 1.22012 0.94063 0.82532 1.05267 1.48115 1.67111 1.14498 1.04776 1.21044 0.76524 0.86901 0.85339 1.90706 1.44234 1.17987 1.87245 1.21805 1.03469 1.00305 0.92009 1.21481 1.02134 0.97809 0.92934 1.21469 1.00614 0.98831 0.93009 1.19574 0.96031 0.95573 0.94079 1.21191 1.44213 1.01166 0.89054 0.91115 1.25039 0.95086 0.97926 0.95550 1.69922 1.49827 1.37467 0.97406 0.86780 0.79436 0.85543 0.77592 1.20307 1.21463 1.18898 1.19929 0.93306 0.94836 0.83113 0.88994 1.22410 0.93028 0.88079 0.97136 1.86579 1.56186 1.36980 1.56412 1.19787 0.94582 0.94531 0.98893 1.20826 0.92195 0.98746 0.97821 1.21127 0.96160 0.97161 0.99935 1.21101 0.99198 0.94589 0.99119 1.21011 0.92979 0.99382 1.00876 1.20874 0.96169 0.95868 0.99794 0.92188 0.91535 0.92620 0.90239 0.87509 0.89236 0.89194 0.91912 0.91889 0.92933 0.92918 0.96652 0.97085 0.92844 0.91969 0.92175 0.77440 0.86350 0.86430 0.86491 0.86401 0.86592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 9.95 37.16 0.37 -0.80 16 2 C 0.08 0.66 5.22 -4.04 -0.02 0.63 16 3 N -0.61 -6.52 1.85 -167.43 -0.31 -6.83 16 4 C 0.51 7.37 7.15 -10.99 -0.08 7.29 16 5 O -0.53 -9.64 15.22 5.56 0.08 -9.55 16 6 C -0.14 -1.87 4.24 -27.89 -0.12 -1.99 16 7 C -0.11 -1.88 4.50 -26.73 -0.12 -2.00 16 8 C -0.10 -2.07 5.15 -26.72 -0.14 -2.21 16 9 C -0.02 -0.38 4.04 -27.88 -0.11 -0.50 16 10 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 11 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 12 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 13 N -0.91 -28.75 13.96 55.43 0.77 -27.98 16 14 Si 0.88 22.75 27.47 -169.99 -4.67 18.08 16 15 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 16 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 17 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 18 C 0.19 1.89 2.71 -69.08 -0.19 1.71 16 19 H 0.09 0.95 8.03 -51.93 -0.42 0.53 16 20 C 0.07 0.43 5.98 37.16 0.22 0.65 16 21 O -0.56 -3.28 9.73 -35.23 -0.34 -3.63 16 22 C -0.08 -0.90 3.61 -104.63 -0.38 -1.28 16 23 C -0.08 -0.96 8.08 -39.58 -0.32 -1.28 16 24 C -0.13 -1.48 10.05 -39.58 -0.40 -1.88 16 25 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 26 C -0.12 -1.36 10.05 -39.59 -0.40 -1.76 16 27 C -0.11 -1.24 9.67 -39.59 -0.38 -1.62 16 28 H 0.06 0.48 7.31 -51.93 -0.38 0.11 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.35 6.52 -51.93 -0.34 0.01 16 31 H 0.08 0.63 6.40 -51.93 -0.33 0.30 16 32 H 0.11 0.72 4.74 -51.93 -0.25 0.47 16 33 H 0.09 1.10 7.40 -51.93 -0.38 0.72 16 34 H 0.09 1.09 7.27 -51.93 -0.38 0.71 16 35 H 0.06 1.17 8.10 -51.93 -0.42 0.75 16 36 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 37 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.02 0.39 7.20 -51.93 -0.37 0.01 16 40 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 41 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 42 H 0.06 0.29 5.65 -51.93 -0.29 0.00 16 43 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 44 H 0.38 0.60 9.12 45.56 0.42 1.01 16 45 H 0.12 1.45 7.55 -52.49 -0.40 1.05 16 46 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 47 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 48 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 49 H 0.12 1.10 8.05 -52.48 -0.42 0.68 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -36.43 386.61 -8.85 -45.28 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -7.33 Total: -0.62 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.89 Total: -20.57 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.46 Total: -34.81 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.26 Total: -13.18 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.67 Total: 18.08 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.43 -8.85 -45.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922086119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.790 kcal (2) G-P(sol) polarization free energy of solvation -36.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds