Wall clock time and date at job start Tue Mar 31 2020 13:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47057 * 2 1 4 4 C 1.34781 * 120.00216 * 268.91540 * 3 2 1 5 5 O 1.21277 * 119.99686 * 180.02562 * 4 3 2 6 6 C 1.50693 * 119.99773 * 0.02562 * 4 3 2 7 7 C 1.53002 * 109.47003 * 180.02562 * 6 4 3 8 8 C 1.52999 * 109.46872 * 180.02562 * 7 6 4 9 9 C 1.53013 * 109.46895 * 179.97438 * 8 7 6 10 10 C 1.50693 * 109.47026 * 179.97438 * 9 8 7 11 11 H 1.07999 * 120.00350 * 0.02562 * 10 9 8 12 12 C 1.37879 * 120.00145 * 180.02562 * 10 9 8 13 13 N 1.31515 * 120.00343 * 180.02562 * 12 10 9 14 14 Si 1.86805 * 119.99804 * 359.97438 * 12 10 9 15 15 H 1.48502 * 109.46789 * 90.00059 * 14 12 10 16 16 H 1.48493 * 109.47078 * 210.00741 * 14 12 10 17 17 H 1.48507 * 109.46979 * 330.00587 * 14 12 10 18 18 C 1.46503 * 119.99940 * 88.92343 * 3 2 1 19 19 H 1.09002 * 109.46527 * 237.29476 * 18 3 2 20 20 C 1.53004 * 109.46904 * 357.28609 * 18 3 2 21 21 O 1.42900 * 109.47108 * 67.49226 * 20 18 3 22 22 C 1.50694 * 109.47736 * 117.28975 * 18 3 2 23 23 C 1.38242 * 119.99746 * 322.21892 * 22 18 3 24 24 C 1.38231 * 120.00004 * 179.80724 * 23 22 18 25 25 C 1.38241 * 119.99582 * 0.39973 * 24 23 22 26 26 C 1.38231 * 120.00141 * 359.85498 * 25 24 23 27 27 C 1.38226 * 120.00128 * 359.95569 * 26 25 24 28 28 H 1.09000 * 109.47256 * 65.99283 * 1 2 3 29 29 H 1.08998 * 109.47199 * 185.99183 * 1 2 3 30 30 H 1.08996 * 109.47050 * 305.99376 * 1 2 3 31 31 H 1.09002 * 109.47192 * 240.00399 * 2 1 3 32 32 H 1.08999 * 109.47013 * 120.00346 * 2 1 3 33 33 H 1.09003 * 109.47160 * 299.99837 * 6 4 3 34 34 H 1.09001 * 109.47347 * 59.99955 * 6 4 3 35 35 H 1.09005 * 109.47197 * 299.99394 * 7 6 4 36 36 H 1.08995 * 109.47532 * 59.99985 * 7 6 4 37 37 H 1.09000 * 109.47176 * 299.98911 * 8 7 6 38 38 H 1.09001 * 109.47487 * 59.99884 * 8 7 6 39 39 H 1.08994 * 109.47010 * 299.99736 * 9 8 7 40 40 H 1.09001 * 109.46878 * 59.99841 * 9 8 7 41 41 H 0.96997 * 119.99993 * 179.97438 * 13 12 10 42 42 H 1.08998 * 109.46845 * 307.48869 * 20 18 3 43 43 H 1.09000 * 109.46957 * 187.49247 * 20 18 3 44 44 H 0.96699 * 113.99796 * 180.02562 * 21 20 18 45 45 H 1.07998 * 119.99659 * 359.97438 * 23 22 18 46 46 H 1.08000 * 120.00351 * 180.23060 * 24 23 22 47 47 H 1.08010 * 119.99622 * 179.83361 * 25 24 23 48 48 H 1.08001 * 119.99567 * 179.97438 * 26 25 24 49 49 H 1.08008 * 119.99918 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2637 2.0092 -1.1670 5 8 2.6684 3.1525 -1.1669 6 6 2.0353 1.2908 -2.4718 7 6 2.3882 2.2206 -3.6345 8 6 2.1557 1.4914 -4.9593 9 6 2.5080 2.4215 -6.1221 10 6 2.2796 1.7031 -7.4269 11 1 1.9188 0.6851 -7.4270 12 6 2.5312 2.3453 -8.6208 13 7 2.3314 1.7185 -9.7596 14 14 3.1545 4.1063 -8.6207 15 1 4.6393 4.1057 -8.5939 16 1 2.6817 4.7988 -9.8463 17 1 2.6381 4.8142 -7.4217 18 6 2.2400 2.0798 1.2685 19 1 1.6449 2.9928 1.2892 20 6 1.8240 1.1737 2.4291 21 8 2.7166 0.0605 2.5079 22 6 3.7000 2.4284 1.4017 23 6 4.6650 1.5449 0.9555 24 6 6.0042 1.8663 1.0740 25 6 6.3785 3.0678 1.6463 26 6 5.4136 3.9489 2.0972 27 6 4.0744 3.6291 1.9752 28 1 -0.3634 0.4181 -0.9388 29 1 -0.3633 -1.0220 0.1073 30 1 -0.3633 0.6039 0.8314 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 2.6661 0.4028 -2.5129 34 1 0.9884 0.9966 -2.5462 35 1 1.7577 3.1089 -3.5937 36 1 3.4352 2.5144 -3.5600 37 1 2.7859 0.6030 -5.0005 38 1 1.1086 1.1980 -5.0337 39 1 1.8776 3.3097 -6.0807 40 1 3.5551 2.7153 -6.0479 41 1 2.5080 2.1705 -10.5994 42 1 0.8085 0.8141 2.2634 43 1 1.8624 1.7369 3.3616 44 1 2.5122 -0.5576 3.2229 45 1 4.3725 0.6047 0.5118 46 1 6.7581 1.1778 0.7220 47 1 7.4250 3.3178 1.7413 48 1 5.7062 4.8873 2.5447 49 1 3.3205 4.3178 2.3272 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000922086119.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:55 Heat of formation + Delta-G solvation = -91.914961 kcal Electronic energy + Delta-G solvation = -27302.141646 eV Core-core repulsion = 23613.924715 eV Total energy + Delta-G solvation = -3688.216930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.59118 -39.77184 -38.35684 -36.70468 -36.29545 -34.67089 -33.60653 -31.79846 -31.73993 -30.78008 -29.47535 -27.53126 -24.69698 -24.34081 -23.42758 -23.35390 -21.97300 -21.57034 -19.76584 -18.88390 -18.56576 -18.20880 -17.40967 -17.32451 -16.84039 -16.33718 -16.19659 -15.71299 -15.56463 -15.37392 -15.02318 -14.68462 -14.43143 -14.27123 -14.20760 -14.08854 -13.78837 -13.66915 -13.48132 -13.39309 -13.10031 -12.86447 -12.74437 -12.56017 -12.26892 -12.23748 -11.94855 -11.86037 -11.77041 -11.74229 -11.50373 -11.36388 -11.27822 -10.97122 -10.77168 -10.50368 -9.77962 -9.72889 -9.46898 -8.30811 -6.33771 0.47703 0.56916 1.33595 1.34792 1.47956 1.68980 2.01155 2.34861 2.92587 3.04485 3.30039 3.65274 3.75960 3.97194 3.99682 4.08961 4.09350 4.16214 4.18971 4.28826 4.41395 4.42779 4.50218 4.58177 4.60640 4.62910 4.71538 4.73058 4.76156 4.80118 4.82504 4.99351 5.08390 5.12587 5.13338 5.18398 5.20482 5.24560 5.44747 5.56257 5.58876 5.59826 5.63278 5.65217 5.67120 5.80672 6.16272 6.28412 6.43577 6.73832 6.95061 7.25486 7.31055 8.85845 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.002900 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.304643 B = 9653.051120 C =10854.904738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.078 3.922 3 N -0.598 5.598 4 C 0.509 3.491 5 O -0.575 6.575 6 C -0.129 4.129 7 C -0.094 4.094 8 C -0.092 4.092 9 C -0.016 4.016 10 C -0.530 4.530 11 H 0.038 0.962 12 C 0.005 3.995 13 N -0.950 5.950 14 Si 0.946 3.054 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.254 1.254 18 C 0.183 3.817 19 H 0.085 0.915 20 C 0.081 3.919 21 O -0.571 6.571 22 C -0.085 4.085 23 C -0.094 4.094 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.132 4.132 27 C -0.126 4.126 28 H 0.045 0.955 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.124 0.876 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.050 0.950 36 H 0.047 0.953 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.013 0.987 40 H 0.011 0.989 41 H 0.267 0.733 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.398 0.602 45 H 0.115 0.885 46 H 0.128 0.872 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.605 -3.673 34.647 34.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.043 4.043 3 N -0.331 5.331 4 C 0.299 3.701 5 O -0.454 6.454 6 C -0.169 4.169 7 C -0.133 4.133 8 C -0.130 4.130 9 C -0.053 4.053 10 C -0.568 4.568 11 H 0.056 0.944 12 C -0.191 4.191 13 N -0.591 5.591 14 Si 0.770 3.230 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.178 1.178 18 C 0.080 3.920 19 H 0.102 0.898 20 C 0.004 3.996 21 O -0.380 6.380 22 C -0.086 4.086 23 C -0.112 4.112 24 C -0.159 4.159 25 C -0.152 4.152 26 C -0.150 4.150 27 C -0.144 4.144 28 H 0.064 0.936 29 H 0.104 0.896 30 H 0.081 0.919 31 H 0.098 0.902 32 H 0.141 0.859 33 H 0.125 0.875 34 H 0.129 0.871 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.074 0.926 38 H 0.076 0.924 39 H 0.032 0.968 40 H 0.029 0.971 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.092 0.908 44 H 0.249 0.751 45 H 0.133 0.867 46 H 0.146 0.854 47 H 0.154 0.846 48 H 0.156 0.844 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -0.140 -2.784 33.980 34.094 hybrid contribution 0.068 0.486 -0.421 0.646 sum -0.072 -2.299 33.559 33.638 Atomic orbital electron populations 1.22275 0.95064 1.03386 1.02031 1.22267 0.94993 0.80863 1.06166 1.48120 1.65485 1.15308 1.04147 1.21079 0.76259 0.86360 0.86434 1.90683 1.46803 1.19952 1.87977 1.21705 1.05064 0.99715 0.90406 1.21258 1.00967 0.97913 0.93113 1.21329 1.00897 0.98106 0.92634 1.19560 0.95908 0.96023 0.93804 1.21529 1.43765 1.00230 0.91300 0.94390 1.25970 0.95357 1.02722 0.95091 1.70054 1.51176 1.39610 0.98244 0.85715 0.79243 0.79850 0.78210 1.19246 1.20515 1.17772 1.20125 0.92284 0.95686 0.83918 0.89751 1.22307 0.93551 0.87906 0.95879 1.86520 1.56463 1.37320 1.57703 1.20030 0.95499 0.94543 0.98522 1.20898 0.92706 0.98964 0.98650 1.21395 0.96442 0.97877 1.00221 1.21396 1.00368 0.94428 0.98975 1.21348 0.92938 1.00170 1.00568 1.21179 0.96910 0.96186 1.00146 0.93590 0.89618 0.91931 0.90206 0.85887 0.87481 0.87150 0.93083 0.93394 0.92587 0.92411 0.96833 0.97101 0.92462 0.90109 0.90819 0.75080 0.86740 0.85387 0.84616 0.84421 0.85279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.81 9.95 71.98 0.72 -1.09 16 2 C 0.08 1.04 5.22 86.38 0.45 1.49 16 3 N -0.60 -11.93 1.85 -802.02 -1.49 -13.42 16 4 C 0.51 14.28 7.15 87.65 0.63 14.90 16 5 O -0.57 -21.18 15.22 -3.02 -0.05 -21.23 16 6 C -0.13 -3.39 4.24 29.85 0.13 -3.27 16 7 C -0.09 -3.31 4.50 30.59 0.14 -3.17 16 8 C -0.09 -3.71 5.15 30.60 0.16 -3.55 16 9 C -0.02 -0.78 4.04 29.85 0.12 -0.66 16 10 C -0.53 -31.85 9.66 25.60 0.25 -31.60 16 11 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 12 C 0.01 0.32 5.47 84.65 0.46 0.79 16 13 N -0.95 -61.16 13.96 21.45 0.30 -60.86 16 14 Si 0.95 46.82 27.47 68.60 1.88 48.71 16 15 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 16 H -0.28 -13.35 7.11 99.48 0.71 -12.65 16 17 H -0.25 -12.03 6.54 99.48 0.65 -11.38 16 18 C 0.18 3.38 2.71 44.24 0.12 3.50 16 19 H 0.08 1.68 8.03 -2.39 -0.02 1.66 16 20 C 0.08 0.78 5.98 71.98 0.43 1.21 16 21 O -0.57 -5.29 9.73 -148.98 -1.45 -6.74 16 22 C -0.08 -1.94 3.61 -19.87 -0.07 -2.01 16 23 C -0.09 -2.27 8.08 22.27 0.18 -2.09 16 24 C -0.14 -3.27 10.05 22.27 0.22 -3.04 16 25 C -0.13 -2.86 10.05 22.27 0.22 -2.63 16 26 C -0.13 -2.78 10.05 22.27 0.22 -2.56 16 27 C -0.13 -2.79 9.67 22.27 0.22 -2.57 16 28 H 0.04 0.64 7.31 -2.39 -0.02 0.62 16 29 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.59 6.52 -2.39 -0.02 0.57 16 31 H 0.08 1.08 6.40 -2.39 -0.02 1.06 16 32 H 0.12 1.29 4.74 -2.39 -0.01 1.28 16 33 H 0.11 2.44 7.40 -2.39 -0.02 2.42 16 34 H 0.11 2.45 7.27 -2.39 -0.02 2.43 16 35 H 0.05 1.89 8.10 -2.38 -0.02 1.88 16 36 H 0.05 1.81 8.10 -2.39 -0.02 1.79 16 37 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.01 0.67 7.20 -2.39 -0.02 0.66 16 40 H 0.01 0.53 7.57 -2.39 -0.02 0.52 16 41 H 0.27 15.97 8.31 -92.71 -0.77 15.19 16 42 H 0.08 0.48 5.65 -2.39 -0.01 0.47 16 43 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.40 0.06 9.12 -74.06 -0.68 -0.62 16 45 H 0.11 2.74 7.55 -2.91 -0.02 2.72 16 46 H 0.13 2.52 8.06 -2.91 -0.02 2.50 16 47 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 48 H 0.14 2.20 8.06 -2.91 -0.02 2.18 16 49 H 0.13 2.36 8.05 -2.91 -0.02 2.34 16 Total: -1.00 -80.14 386.61 3.99 -76.15 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.20 Total: 13.75 kcal Atomic # 6 Polarization: -40.95 SS G_CDS: 4.59 Total: -36.36 kcal Atomic # 7 Polarization: -73.10 SS G_CDS: -1.19 Total: -74.28 kcal Atomic # 8 Polarization: -26.47 SS G_CDS: -1.50 Total: -27.97 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 1.88 Total: 48.71 kcal Total: -80.14 3.99 -76.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000922086119.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.764 kcal (2) G-P(sol) polarization free energy of solvation -80.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds