Wall clock time and date at job start Tue Mar 31 2020 12:57:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 O 1.45200 * 109.46474 * 2 1
4 4 C 1.34234 * 116.99902 * 180.02562 * 3 2 1
5 5 O 1.20827 * 119.99594 * 0.27911 * 4 3 2
6 6 C 1.50701 * 120.00302 * 180.02562 * 4 3 2
7 7 H 1.09000 * 109.46965 * 59.99712 * 6 4 3
8 8 C 1.53003 * 109.46800 * 300.00245 * 6 4 3
9 9 C 1.53001 * 109.46749 * 175.00194 * 8 6 4
10 10 C 1.50706 * 109.46856 * 179.97438 * 9 8 6
11 11 C 1.38230 * 119.99706 * 269.72308 * 10 9 8
12 12 C 1.38242 * 119.99695 * 179.76362 * 11 10 9
13 13 C 1.38238 * 119.99962 * 0.51448 * 12 11 10
14 14 C 1.38239 * 119.99828 * 359.74166 * 13 12 11
15 15 C 1.38233 * 119.99983 * 359.97438 * 14 13 12
16 16 N 1.46896 * 109.47126 * 179.97438 * 6 4 3
17 17 C 1.46906 * 111.00103 * 58.95600 * 16 6 4
18 18 C 1.52991 * 109.47184 * 163.56012 * 17 16 6
19 19 C 1.46898 * 111.00356 * 294.99963 * 16 6 4
20 20 C 1.50704 * 109.47103 * 284.18580 * 19 16 6
21 21 H 1.08003 * 119.99856 * 4.80199 * 20 19 16
22 22 C 1.37878 * 120.00080 * 184.81216 * 20 19 16
23 23 N 1.31520 * 119.99647 * 359.97438 * 22 20 19
24 24 Si 1.86795 * 120.00007 * 179.97438 * 22 20 19
25 25 H 1.48501 * 109.46987 * 359.97438 * 24 22 20
26 26 H 1.48501 * 109.47123 * 119.99608 * 24 22 20
27 27 H 1.48503 * 109.47038 * 239.99520 * 24 22 20
28 28 H 1.08999 * 109.47282 * 299.99366 * 1 2 3
29 29 H 1.08999 * 109.47017 * 60.00278 * 1 2 3
30 30 H 1.09001 * 109.46446 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47282 * 240.00634 * 2 1 3
32 32 H 1.08990 * 109.47076 * 120.00008 * 2 1 3
33 33 H 1.08996 * 109.46750 * 294.99653 * 8 6 4
34 34 H 1.08990 * 109.47327 * 54.99801 * 8 6 4
35 35 H 1.08996 * 109.47052 * 299.99273 * 9 8 6
36 36 H 1.09000 * 109.47390 * 59.99840 * 9 8 6
37 37 H 1.07999 * 120.00349 * 0.02562 * 11 10 9
38 38 H 1.07998 * 120.00021 * 180.22494 * 12 11 10
39 39 H 1.07997 * 119.99707 * 179.72334 * 13 12 11
40 40 H 1.07999 * 119.99882 * 179.97438 * 14 13 12
41 41 H 1.08003 * 119.99705 * 179.97438 * 15 14 13
42 42 H 1.09006 * 109.46523 * 283.55704 * 17 16 6
43 43 H 1.09000 * 109.46804 * 43.55297 * 17 16 6
44 44 H 1.09004 * 109.47135 * 298.19788 * 18 17 16
45 45 H 1.09000 * 109.47656 * 58.20025 * 18 17 16
46 46 H 1.09000 * 109.46934 * 178.19850 * 18 17 16
47 47 H 1.09007 * 109.47192 * 44.17998 * 19 16 6
48 48 H 1.09001 * 109.47413 * 164.18149 * 19 16 6
49 49 H 0.97004 * 119.99572 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3447 1.5450 -0.0005
5 8 4.0807 0.5868 -0.0061
6 6 3.9206 2.9376 0.0000
7 1 3.5850 3.4692 0.8905
8 6 3.4483 3.6853 -1.2486
9 6 3.9297 5.1363 -1.1867
10 6 3.4651 5.8725 -2.4168
11 6 4.2625 5.9047 -3.5454
12 6 3.8341 6.5760 -4.6755
13 6 2.6130 7.2239 -4.6732
14 6 1.8179 7.1961 -3.5427
15 6 2.2437 6.5200 -2.4147
16 7 5.3876 2.8608 -0.0001
17 6 5.8763 2.1275 -1.1755
18 6 7.3674 2.4099 -1.3691
19 6 5.8831 2.2540 1.2425
20 6 5.7906 3.2573 2.3632
21 1 5.3314 4.2194 2.1901
22 6 6.2923 2.9470 3.6094
23 7 6.8512 1.7753 3.8202
24 14 6.1782 4.1909 4.9984
25 1 5.5108 5.4227 4.5060
26 1 5.3898 3.6134 6.1165
27 1 7.5437 4.5255 5.4766
28 1 -0.3634 0.5137 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3632 -1.0277 -0.0005
31 1 1.8934 -0.5137 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 3.8579 3.2042 -2.1367
34 1 2.3596 3.6652 -1.2940
35 1 3.5201 5.6173 -0.2985
36 1 5.0186 5.1562 -1.1413
37 1 5.2183 5.4020 -3.5458
38 1 4.4555 6.5981 -5.5585
39 1 2.2804 7.7521 -5.5545
40 1 0.8641 7.7027 -3.5408
41 1 1.6227 6.4986 -1.5314
42 1 5.7254 1.0584 -1.0252
43 1 5.3272 2.4511 -2.0598
44 1 7.5149 3.4744 -1.5511
45 1 7.9125 2.1156 -0.4722
46 1 7.7372 1.8408 -2.2220
47 1 5.2788 1.3802 1.4863
48 1 6.9220 1.9518 1.1102
49 1 7.2038 1.5569 4.6971
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000929775629.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:57:07
Heat of formation + Delta-G solvation = -65.754930 kcal
Electronic energy + Delta-G solvation = -27799.582730 eV
Core-core repulsion = 24112.500183 eV
Total energy + Delta-G solvation = -3687.082546 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.64 seconds
Orbital eigenvalues (eV)
-40.40711 -39.21120 -37.54869 -35.69395 -33.99460 -32.54801 -31.75620 -30.85447
-30.82446 -29.38169 -26.98699 -25.60430 -23.50565 -22.66804 -22.50202 -22.26806
-21.08176 -20.62770 -19.27259 -17.29850 -16.73032 -16.59466 -16.21703 -15.52206
-15.48349 -14.99176 -14.82139 -14.65505 -14.15703 -13.96085 -13.42710 -13.37228
-13.30000 -13.00056 -12.83186 -12.68072 -12.52922 -12.14951 -11.97981 -11.69162
-11.49662 -11.43667 -11.30389 -11.16942 -11.10204 -10.92224 -10.82539 -10.66282
-10.51045 -10.39866 -10.24192 -10.05214 -10.02481 -9.61294 -9.14767 -8.88899
-8.61463 -8.38746 -7.29906 -5.98463 -4.00161 1.40632 1.43334 2.73754
3.10686 3.32066 3.39754 3.43606 3.83260 4.42610 4.71843 4.83766
4.91575 4.99388 5.02183 5.06131 5.13925 5.19793 5.33649 5.37265
5.39992 5.46511 5.54837 5.57688 5.67820 5.73960 5.82843 5.87544
5.93001 5.98320 5.98980 6.05606 6.12266 6.13916 6.18852 6.35793
6.45135 6.51044 6.52712 6.60636 6.66631 6.80706 6.83443 6.94991
7.06735 7.20336 7.51517 7.80768 8.03193 8.16879 8.33793 8.51510
9.07118 9.63082 11.11789
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.008731 B = 0.004418 C = 0.003638
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3206.326308 B = 6336.259021 C = 7694.696698
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.058 3.942
3 O -0.366 6.366
4 C 0.435 3.565
5 O -0.499 6.499
6 C 0.102 3.898
7 H 0.125 0.875
8 C -0.099 4.099
9 C -0.075 4.075
10 C -0.070 4.070
11 C -0.116 4.116
12 C -0.121 4.121
13 C -0.133 4.133
14 C -0.122 4.122
15 C -0.119 4.119
16 N -0.496 5.496
17 C 0.028 3.972
18 C -0.140 4.140
19 C 0.178 3.822
20 C -0.508 4.508
21 H 0.063 0.937
22 C 0.056 3.944
23 N -0.896 5.896
24 Si 0.894 3.106
25 H -0.271 1.271
26 H -0.286 1.286
27 H -0.285 1.285
28 H 0.066 0.934
29 H 0.063 0.937
30 H 0.073 0.927
31 H 0.063 0.937
32 H 0.066 0.934
33 H 0.067 0.933
34 H 0.071 0.929
35 H 0.075 0.925
36 H 0.092 0.908
37 H 0.123 0.877
38 H 0.117 0.883
39 H 0.116 0.884
40 H 0.117 0.883
41 H 0.122 0.878
42 H 0.055 0.945
43 H 0.057 0.943
44 H 0.054 0.946
45 H 0.061 0.939
46 H 0.044 0.956
47 H 0.013 0.987
48 H 0.038 0.962
49 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.028 4.881 -14.742 19.047
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.016 4.016
3 O -0.282 6.282
4 C 0.276 3.724
5 O -0.385 6.385
6 C -0.010 4.010
7 H 0.142 0.858
8 C -0.137 4.137
9 C -0.112 4.112
10 C -0.070 4.070
11 C -0.134 4.134
12 C -0.139 4.139
13 C -0.151 4.151
14 C -0.140 4.140
15 C -0.137 4.137
16 N -0.220 5.220
17 C -0.099 4.099
18 C -0.198 4.198
19 C 0.054 3.946
20 C -0.547 4.547
21 H 0.081 0.919
22 C -0.145 4.145
23 N -0.535 5.535
24 Si 0.722 3.278
25 H -0.196 1.196
26 H -0.212 1.212
27 H -0.211 1.211
28 H 0.085 0.915
29 H 0.082 0.918
30 H 0.092 0.908
31 H 0.081 0.919
32 H 0.085 0.915
33 H 0.085 0.915
34 H 0.090 0.910
35 H 0.093 0.907
36 H 0.111 0.889
37 H 0.141 0.859
38 H 0.135 0.865
39 H 0.134 0.866
40 H 0.135 0.865
41 H 0.140 0.860
42 H 0.073 0.927
43 H 0.076 0.924
44 H 0.073 0.927
45 H 0.080 0.920
46 H 0.063 0.937
47 H 0.031 0.969
48 H 0.056 0.944
49 H 0.069 0.931
Dipole moment (debyes) X Y Z Total
from point charges -10.531 4.929 -14.627 18.686
hybrid contribution -0.252 -0.516 0.965 1.123
sum -10.783 4.412 -13.662 17.955
Atomic orbital electron populations
1.21776 0.93168 1.02451 1.03262 1.22887 0.94932 0.81602 1.02173
1.86575 1.26049 1.31337 1.84282 1.25971 0.80001 0.94709 0.71715
1.90609 1.59621 1.43559 1.44735 1.21838 0.90183 0.87685 1.01272
0.85764 1.21604 1.00601 0.95047 0.96439 1.20557 1.03185 0.93270
0.94184 1.20115 0.94117 0.96863 0.95916 1.21144 0.99967 0.99462
0.92863 1.21130 0.96460 0.98138 0.98206 1.21076 0.95197 1.00620
0.98251 1.21113 0.99625 0.99701 0.93547 1.21126 0.96185 0.97986
0.98416 1.62738 1.02453 1.51889 1.04891 1.22360 0.95973 0.98282
0.93317 1.21715 0.95935 1.01134 1.01025 1.20025 0.96394 0.94160
0.84026 1.21238 1.38202 1.01276 0.93979 0.91878 1.24973 0.95485
0.95363 0.98723 1.69990 1.39784 1.20990 1.22780 0.86511 0.77705
0.81510 0.82114 1.19599 1.21238 1.21080 0.91535 0.91774 0.90769
0.91903 0.91516 0.91466 0.91006 0.90672 0.88901 0.85932 0.86453
0.86639 0.86478 0.86043 0.92714 0.92439 0.92701 0.91972 0.93703
0.96944 0.94361 0.93075
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.54 10.29 37.16 0.38 -1.16 16
2 C 0.06 0.83 6.19 37.16 0.23 1.06 16
3 O -0.37 -6.16 10.03 -39.27 -0.39 -6.55 16
4 C 0.44 8.40 6.48 36.01 0.23 8.64 16
5 O -0.50 -11.04 11.64 -18.75 -0.22 -11.26 16
6 C 0.10 1.86 2.18 -68.86 -0.15 1.71 16
7 H 0.12 2.40 7.39 -51.93 -0.38 2.02 16
8 C -0.10 -1.43 4.49 -26.73 -0.12 -1.55 16
9 C -0.07 -1.02 5.23 -27.88 -0.15 -1.16 16
10 C -0.07 -0.88 5.13 -104.62 -0.54 -1.41 16
11 C -0.12 -1.39 9.70 -39.58 -0.38 -1.77 16
12 C -0.12 -1.29 10.05 -39.58 -0.40 -1.69 16
13 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16
14 C -0.12 -1.27 10.05 -39.58 -0.40 -1.67 16
15 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16
16 N -0.50 -10.19 3.82 -229.47 -0.88 -11.07 16
17 C 0.03 0.53 4.81 -3.83 -0.02 0.51 16
18 C -0.14 -2.43 10.01 37.15 0.37 -2.05 16
19 C 0.18 4.61 4.25 -4.97 -0.02 4.59 16
20 C -0.51 -13.95 8.68 -34.44 -0.30 -14.25 16
21 H 0.06 1.68 7.62 -52.48 -0.40 1.28 16
22 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16
23 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16
24 Si 0.89 21.52 29.54 -169.99 -5.02 16.49 16
25 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16
26 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16
27 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16
28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16
29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16
31 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16
32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16
33 H 0.07 0.96 5.90 -51.93 -0.31 0.66 16
34 H 0.07 0.96 7.99 -51.93 -0.42 0.54 16
35 H 0.07 1.02 8.09 -51.93 -0.42 0.60 16
36 H 0.09 1.40 7.69 -51.93 -0.40 1.00 16
37 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16
38 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16
39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16
40 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16
41 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16
42 H 0.05 1.15 5.78 -51.93 -0.30 0.85 16
43 H 0.06 0.94 5.59 -51.93 -0.29 0.65 16
44 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
45 H 0.06 1.22 6.52 -51.93 -0.34 0.89 16
46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16
47 H 0.01 0.37 5.72 -51.93 -0.30 0.07 16
48 H 0.04 1.08 6.26 -51.93 -0.32 0.75 16
49 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16
LS Contribution 392.49 15.07 5.91 5.91
Total: -1.00 -31.47 392.49 -10.07 -41.54
By element:
Atomic # 1 Polarization: 11.32 SS G_CDS: -8.08 Total: 3.24 kcal
Atomic # 6 Polarization: -10.08 SS G_CDS: -2.13 Total: -12.22 kcal
Atomic # 7 Polarization: -37.03 SS G_CDS: -0.14 Total: -37.17 kcal
Atomic # 8 Polarization: -17.20 SS G_CDS: -0.61 Total: -17.81 kcal
Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.49 kcal
Total LS contribution 5.91 Total: 5.91 kcal
Total: -31.47 -10.07 -41.54 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000929775629.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -24.213 kcal
(2) G-P(sol) polarization free energy of solvation -31.469 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.682 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.755 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.64 seconds