Wall clock time and date at job start Tue Mar 31 2020 12:57:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53008 * 1
3 3 O 1.45200 * 109.46474 * 2 1
4 4 C 1.34234 * 116.99902 * 180.02562 * 3 2 1
5 5 O 1.20827 * 119.99594 * 0.27911 * 4 3 2
6 6 C 1.50701 * 120.00302 * 180.02562 * 4 3 2
7 7 H 1.09000 * 109.46965 * 59.99712 * 6 4 3
8 8 C 1.53003 * 109.46800 * 300.00245 * 6 4 3
9 9 C 1.53001 * 109.46749 * 175.00194 * 8 6 4
10 10 C 1.50706 * 109.46856 * 179.97438 * 9 8 6
11 11 C 1.38230 * 119.99706 * 269.72308 * 10 9 8
12 12 C 1.38242 * 119.99695 * 179.76362 * 11 10 9
13 13 C 1.38238 * 119.99962 * 0.51448 * 12 11 10
14 14 C 1.38239 * 119.99828 * 359.74166 * 13 12 11
15 15 C 1.38233 * 119.99983 * 359.97438 * 14 13 12
16 16 N 1.46896 * 109.47126 * 179.97438 * 6 4 3
17 17 C 1.46906 * 111.00103 * 58.95600 * 16 6 4
18 18 C 1.52991 * 109.47184 * 163.56012 * 17 16 6
19 19 C 1.46898 * 111.00356 * 294.99963 * 16 6 4
20 20 C 1.50704 * 109.47103 * 284.18580 * 19 16 6
21 21 H 1.08003 * 119.99856 * 4.80199 * 20 19 16
22 22 C 1.37878 * 120.00080 * 184.81216 * 20 19 16
23 23 N 1.31520 * 119.99647 * 359.97438 * 22 20 19
24 24 Si 1.86795 * 120.00007 * 179.97438 * 22 20 19
25 25 H 1.48501 * 109.46987 * 359.97438 * 24 22 20
26 26 H 1.48501 * 109.47123 * 119.99608 * 24 22 20
27 27 H 1.48503 * 109.47038 * 239.99520 * 24 22 20
28 28 H 1.08999 * 109.47282 * 299.99366 * 1 2 3
29 29 H 1.08999 * 109.47017 * 60.00278 * 1 2 3
30 30 H 1.09001 * 109.46446 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47282 * 240.00634 * 2 1 3
32 32 H 1.08990 * 109.47076 * 120.00008 * 2 1 3
33 33 H 1.08996 * 109.46750 * 294.99653 * 8 6 4
34 34 H 1.08990 * 109.47327 * 54.99801 * 8 6 4
35 35 H 1.08996 * 109.47052 * 299.99273 * 9 8 6
36 36 H 1.09000 * 109.47390 * 59.99840 * 9 8 6
37 37 H 1.07999 * 120.00349 * 0.02562 * 11 10 9
38 38 H 1.07998 * 120.00021 * 180.22494 * 12 11 10
39 39 H 1.07997 * 119.99707 * 179.72334 * 13 12 11
40 40 H 1.07999 * 119.99882 * 179.97438 * 14 13 12
41 41 H 1.08003 * 119.99705 * 179.97438 * 15 14 13
42 42 H 1.09006 * 109.46523 * 283.55704 * 17 16 6
43 43 H 1.09000 * 109.46804 * 43.55297 * 17 16 6
44 44 H 1.09004 * 109.47135 * 298.19788 * 18 17 16
45 45 H 1.09000 * 109.47656 * 58.20025 * 18 17 16
46 46 H 1.09000 * 109.46934 * 178.19850 * 18 17 16
47 47 H 1.09007 * 109.47192 * 44.17998 * 19 16 6
48 48 H 1.09001 * 109.47413 * 164.18149 * 19 16 6
49 49 H 0.97004 * 119.99572 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 8 2.0139 1.3690 0.0000
4 6 3.3447 1.5450 -0.0005
5 8 4.0807 0.5868 -0.0061
6 6 3.9206 2.9376 0.0000
7 1 3.5850 3.4692 0.8905
8 6 3.4483 3.6853 -1.2486
9 6 3.9297 5.1363 -1.1867
10 6 3.4651 5.8725 -2.4168
11 6 4.2625 5.9047 -3.5454
12 6 3.8341 6.5760 -4.6755
13 6 2.6130 7.2239 -4.6732
14 6 1.8179 7.1961 -3.5427
15 6 2.2437 6.5200 -2.4147
16 7 5.3876 2.8608 -0.0001
17 6 5.8763 2.1275 -1.1755
18 6 7.3674 2.4099 -1.3691
19 6 5.8831 2.2540 1.2425
20 6 5.7906 3.2573 2.3632
21 1 5.3314 4.2194 2.1901
22 6 6.2923 2.9470 3.6094
23 7 6.8512 1.7753 3.8202
24 14 6.1782 4.1909 4.9984
25 1 5.5108 5.4227 4.5060
26 1 5.3898 3.6134 6.1165
27 1 7.5437 4.5255 5.4766
28 1 -0.3634 0.5137 0.8900
29 1 -0.3633 0.5138 -0.8900
30 1 -0.3632 -1.0277 -0.0005
31 1 1.8934 -0.5137 -0.8900
32 1 1.8934 -0.5138 0.8899
33 1 3.8579 3.2042 -2.1367
34 1 2.3596 3.6652 -1.2940
35 1 3.5201 5.6173 -0.2985
36 1 5.0186 5.1562 -1.1413
37 1 5.2183 5.4020 -3.5458
38 1 4.4555 6.5981 -5.5585
39 1 2.2804 7.7521 -5.5545
40 1 0.8641 7.7027 -3.5408
41 1 1.6227 6.4986 -1.5314
42 1 5.7254 1.0584 -1.0252
43 1 5.3272 2.4511 -2.0598
44 1 7.5149 3.4744 -1.5511
45 1 7.9125 2.1156 -0.4722
46 1 7.7372 1.8408 -2.2220
47 1 5.2788 1.3802 1.4863
48 1 6.9220 1.9518 1.1102
49 1 7.2038 1.5569 4.6971
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000929775629.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:57:06
Heat of formation + Delta-G solvation = -81.982653 kcal
Electronic energy + Delta-G solvation = -27800.286417 eV
Core-core repulsion = 24112.500183 eV
Total energy + Delta-G solvation = -3687.786233 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.67 seconds
Orbital eigenvalues (eV)
-41.93262 -40.08950 -39.01958 -37.21699 -35.38206 -34.50346 -32.87277 -32.05425
-31.64570 -30.95812 -28.54898 -27.16440 -24.85504 -24.19576 -23.60116 -23.32186
-22.57857 -21.66342 -20.79962 -18.90956 -18.47182 -17.65958 -17.52490 -17.18311
-16.76851 -16.47450 -16.10332 -15.74862 -15.63799 -15.37228 -14.99010 -14.51679
-14.27107 -14.15590 -14.04624 -13.95657 -13.67833 -13.60656 -13.30919 -12.96389
-12.93531 -12.80331 -12.65314 -12.62779 -12.54015 -12.45780 -12.27600 -12.05071
-11.91989 -11.79980 -11.62190 -11.51716 -11.43097 -11.38484 -11.07632 -10.57045
-9.70175 -9.48697 -9.05308 -8.15975 -6.26018 0.56594 0.61943 1.19144
1.41425 1.42286 1.55609 1.74809 2.41534 2.99198 3.08698 3.20077
3.64234 3.90815 3.96210 4.01156 4.09457 4.15078 4.25384 4.26812
4.29217 4.31658 4.42965 4.52080 4.52844 4.64863 4.69114 4.77028
4.79729 4.82190 4.87897 4.90447 5.03231 5.09456 5.11858 5.16421
5.23822 5.25861 5.32217 5.32990 5.37495 5.51075 5.55736 5.69652
5.70407 5.73403 5.90615 6.08729 6.22920 6.25503 6.52718 6.80535
6.90273 7.42712 8.94996
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.008731 B = 0.004418 C = 0.003638
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3206.326308 B = 6336.259021 C = 7694.696698
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.049 3.951
3 O -0.361 6.361
4 C 0.434 3.566
5 O -0.533 6.533
6 C 0.100 3.900
7 H 0.113 0.887
8 C -0.083 4.083
9 C -0.066 4.066
10 C -0.085 4.085
11 C -0.131 4.131
12 C -0.127 4.127
13 C -0.135 4.135
14 C -0.126 4.126
15 C -0.129 4.129
16 N -0.492 5.492
17 C 0.031 3.969
18 C -0.134 4.134
19 C 0.198 3.802
20 C -0.517 4.517
21 H 0.070 0.930
22 C -0.001 4.001
23 N -0.938 5.938
24 Si 0.966 3.034
25 H -0.256 1.256
26 H -0.283 1.283
27 H -0.281 1.281
28 H 0.066 0.934
29 H 0.076 0.924
30 H 0.099 0.901
31 H 0.066 0.934
32 H 0.049 0.951
33 H 0.070 0.930
34 H 0.088 0.912
35 H 0.073 0.927
36 H 0.075 0.925
37 H 0.123 0.877
38 H 0.137 0.863
39 H 0.140 0.860
40 H 0.140 0.860
41 H 0.130 0.870
42 H 0.029 0.971
43 H 0.087 0.913
44 H 0.066 0.934
45 H 0.028 0.972
46 H 0.073 0.927
47 H -0.023 1.023
48 H 0.006 0.994
49 H 0.261 0.739
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.036 6.951 -16.312 22.008
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.025 4.025
3 O -0.277 6.277
4 C 0.277 3.723
5 O -0.422 6.422
6 C -0.012 4.012
7 H 0.130 0.870
8 C -0.121 4.121
9 C -0.103 4.103
10 C -0.085 4.085
11 C -0.149 4.149
12 C -0.145 4.145
13 C -0.153 4.153
14 C -0.144 4.144
15 C -0.147 4.147
16 N -0.216 5.216
17 C -0.097 4.097
18 C -0.191 4.191
19 C 0.072 3.928
20 C -0.555 4.555
21 H 0.088 0.912
22 C -0.198 4.198
23 N -0.579 5.579
24 Si 0.790 3.210
25 H -0.180 1.180
26 H -0.209 1.209
27 H -0.207 1.207
28 H 0.085 0.915
29 H 0.095 0.905
30 H 0.118 0.882
31 H 0.085 0.915
32 H 0.068 0.932
33 H 0.089 0.911
34 H 0.106 0.894
35 H 0.092 0.908
36 H 0.094 0.906
37 H 0.141 0.859
38 H 0.154 0.846
39 H 0.158 0.842
40 H 0.158 0.842
41 H 0.148 0.852
42 H 0.047 0.953
43 H 0.105 0.895
44 H 0.085 0.915
45 H 0.047 0.953
46 H 0.092 0.908
47 H -0.006 1.006
48 H 0.024 0.976
49 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges -12.571 7.018 -16.221 21.689
hybrid contribution 0.299 -1.207 1.368 1.849
sum -12.272 5.810 -14.853 20.124
Atomic orbital electron populations
1.21791 0.89646 1.04357 1.03869 1.23228 0.97626 0.80016 1.01595
1.86552 1.24422 1.33144 1.83610 1.26051 0.80700 0.94625 0.70936
1.90608 1.60592 1.44641 1.46404 1.21919 0.88727 0.87612 1.02915
0.86953 1.21522 1.01425 0.95033 0.94073 1.20404 1.01995 0.92784
0.95145 1.20008 0.95040 0.97959 0.95504 1.21277 1.00146 1.00138
0.93330 1.21409 0.97046 0.97642 0.98406 1.21442 0.94767 1.00005
0.99041 1.21428 1.00574 0.99242 0.93134 1.21308 0.95973 0.98099
0.99363 1.62637 1.04252 1.51211 1.03452 1.22403 0.97247 0.96628
0.93381 1.21668 0.94605 1.02290 1.00576 1.19564 0.94015 0.92870
0.86313 1.21575 1.37725 1.01602 0.94623 0.91178 1.25916 0.95029
0.97270 1.01607 1.70142 1.40993 1.23227 1.23511 0.85386 0.77816
0.79286 0.78470 1.17971 1.20892 1.20720 0.91492 0.90537 0.88205
0.91532 0.93216 0.91138 0.89374 0.90849 0.90628 0.85918 0.84557
0.84189 0.84249 0.85228 0.95273 0.89534 0.91515 0.95310 0.90814
1.00570 0.97597 0.93018
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.60 10.29 71.98 0.74 -1.86 16
2 C 0.05 1.38 6.19 71.98 0.45 1.83 16
3 O -0.36 -12.15 10.03 -51.45 -0.52 -12.66 16
4 C 0.43 17.23 6.48 71.24 0.46 17.69 16
5 O -0.53 -24.78 11.64 21.96 0.26 -24.52 16
6 C 0.10 3.71 2.18 44.17 0.10 3.81 16
7 H 0.11 4.45 7.39 -2.39 -0.02 4.43 16
8 C -0.08 -2.31 4.49 30.60 0.14 -2.18 16
9 C -0.07 -1.75 5.23 29.85 0.16 -1.59 16
10 C -0.09 -2.00 5.13 -19.87 -0.10 -2.10 16
11 C -0.13 -2.91 9.70 22.27 0.22 -2.69 16
12 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16
13 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16
14 C -0.13 -2.25 10.05 22.27 0.22 -2.03 16
15 C -0.13 -2.71 9.70 22.27 0.22 -2.49 16
16 N -0.49 -20.91 3.82 -879.90 -3.36 -24.27 16
17 C 0.03 1.17 4.81 86.30 0.42 1.58 16
18 C -0.13 -4.68 10.01 71.98 0.72 -3.96 16
19 C 0.20 10.82 4.25 85.56 0.36 11.18 16
20 C -0.52 -29.17 8.68 25.60 0.22 -28.95 16
21 H 0.07 3.77 7.62 -2.91 -0.02 3.75 16
22 C 0.00 -0.05 5.46 84.65 0.46 0.42 16
23 N -0.94 -58.20 13.29 21.45 0.28 -57.91 16
24 Si 0.97 44.62 29.54 68.60 2.03 46.65 16
25 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16
26 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16
27 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16
28 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16
29 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16
30 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16
31 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16
32 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16
33 H 0.07 1.93 5.90 -2.39 -0.01 1.91 16
34 H 0.09 2.20 7.99 -2.39 -0.02 2.18 16
35 H 0.07 1.94 8.09 -2.39 -0.02 1.92 16
36 H 0.08 2.26 7.69 -2.39 -0.02 2.24 16
37 H 0.12 2.62 8.06 -2.91 -0.02 2.59 16
38 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16
39 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16
40 H 0.14 1.80 8.06 -2.91 -0.02 1.78 16
41 H 0.13 2.40 8.06 -2.91 -0.02 2.37 16
42 H 0.03 1.28 5.78 -2.38 -0.01 1.26 16
43 H 0.09 2.76 5.59 -2.39 -0.01 2.75 16
44 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16
45 H 0.03 1.18 6.52 -2.39 -0.02 1.16 16
46 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16
47 H -0.02 -1.44 5.72 -2.38 -0.01 -1.45 16
48 H 0.01 0.36 6.26 -2.39 -0.01 0.34 16
49 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16
Total: -1.00 -71.05 392.49 4.83 -66.22
By element:
Atomic # 1 Polarization: 21.16 SS G_CDS: 0.92 Total: 22.07 kcal
Atomic # 6 Polarization: -20.80 SS G_CDS: 5.22 Total: -15.58 kcal
Atomic # 7 Polarization: -79.10 SS G_CDS: -3.08 Total: -82.18 kcal
Atomic # 8 Polarization: -36.92 SS G_CDS: -0.26 Total: -37.18 kcal
Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal
Total: -71.05 4.83 -66.22 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000929775629.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -15.758 kcal
(2) G-P(sol) polarization free energy of solvation -71.053 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.811 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.828 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.224 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.983 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.67 seconds