Wall clock time and date at job start Tue Mar 31 2020 13:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42899 * 109.47291 * 2 1 4 4 C 1.42901 * 114.00448 * 184.95521 * 3 2 1 5 5 C 1.52996 * 109.47468 * 184.73521 * 4 3 2 6 6 N 1.46904 * 109.46827 * 76.10401 * 5 4 3 7 7 C 1.46909 * 110.99821 * 286.99241 * 6 5 4 8 8 C 1.52998 * 109.46989 * 177.43219 * 7 6 5 9 9 H 1.09006 * 109.46663 * 58.15048 * 8 7 6 10 10 O 1.42896 * 109.47568 * 298.15205 * 8 7 6 11 11 C 1.50694 * 109.46973 * 178.15007 * 8 7 6 12 12 H 1.07996 * 120.00307 * 4.82016 * 11 8 7 13 13 C 1.37880 * 119.99762 * 184.82595 * 11 8 7 14 14 N 1.31513 * 120.00171 * 5.33024 * 13 11 8 15 15 Si 1.86803 * 119.99752 * 185.33761 * 13 11 8 16 16 H 1.48496 * 109.47462 * 89.99542 * 15 13 11 17 17 H 1.48498 * 109.47093 * 209.99901 * 15 13 11 18 18 H 1.48502 * 109.47347 * 329.99296 * 15 13 11 19 19 C 1.46898 * 111.00075 * 163.04205 * 6 5 4 20 20 H 1.08998 * 110.27029 * 162.09060 * 19 6 5 21 21 C 1.54342 * 110.30059 * 284.26728 * 19 6 5 22 22 C 1.54351 * 102.39205 * 145.27153 * 21 19 6 23 23 C 1.51370 * 105.16798 * 333.65176 * 22 21 19 24 24 C 1.38496 * 130.38836 * 197.18930 * 23 22 21 25 25 C 1.38104 * 120.21396 * 180.02562 * 24 23 22 26 26 C 1.38259 * 119.93727 * 359.97438 * 25 24 23 27 27 C 1.38109 * 119.93032 * 0.02562 * 26 25 24 28 28 C 1.38218 * 109.76002 * 17.18873 * 23 22 21 29 29 H 1.09002 * 109.47038 * 55.03132 * 1 2 3 30 30 H 1.09001 * 109.47401 * 175.02771 * 1 2 3 31 31 H 1.08996 * 109.47729 * 295.03299 * 1 2 3 32 32 H 1.09002 * 109.47000 * 119.99769 * 2 1 3 33 33 H 1.09005 * 109.47598 * 239.99734 * 2 1 3 34 34 H 1.09003 * 109.46932 * 304.73992 * 4 3 2 35 35 H 1.09005 * 109.46798 * 64.73485 * 4 3 2 36 36 H 1.09000 * 109.47073 * 196.10063 * 5 4 3 37 37 H 1.08995 * 109.47067 * 316.10605 * 5 4 3 38 38 H 1.09000 * 109.47060 * 297.43907 * 7 6 5 39 39 H 1.08999 * 109.46691 * 57.43756 * 7 6 5 40 40 H 0.96700 * 114.00103 * 304.93850 * 10 8 7 41 41 H 0.97002 * 119.99924 * 180.02562 * 14 13 11 42 42 H 1.08997 * 110.82505 * 263.49226 * 21 19 6 43 43 H 1.09003 * 110.82679 * 27.04742 * 21 19 6 44 44 H 1.09004 * 110.30448 * 214.73434 * 22 21 19 45 45 H 1.08996 * 110.38984 * 92.61587 * 22 21 19 46 46 H 1.07995 * 119.89691 * 359.97438 * 24 23 22 47 47 H 1.08006 * 120.03582 * 179.97438 * 25 24 23 48 48 H 1.08000 * 120.03771 * 179.97438 * 26 25 24 49 49 H 1.07999 * 119.88652 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4262 1.4618 -0.1128 5 6 3.8313 2.9315 0.0161 6 7 3.7592 3.3374 1.4261 7 6 2.3635 3.4728 1.8643 8 6 2.3283 3.8332 3.3508 9 1 2.8799 4.7593 3.5132 10 8 2.9283 2.7820 4.1102 11 6 0.8983 4.0167 3.7894 12 1 0.0918 3.8135 3.1005 13 6 0.6196 4.4442 5.0703 14 7 1.5997 4.7922 5.8753 15 14 -1.1501 4.5290 5.6623 16 1 -1.5284 3.2323 6.2791 17 1 -1.2842 5.6134 6.6679 18 1 -2.0446 4.8089 4.5104 19 6 4.5057 4.5817 1.6546 20 1 4.1973 5.0400 2.5943 21 6 6.0234 4.3013 1.6659 22 6 6.6013 5.5801 1.0231 23 6 5.4930 6.1164 0.1426 24 6 5.5350 7.0338 -0.8941 25 6 4.3780 7.3772 -1.5655 26 6 3.1736 6.8035 -1.2026 27 6 3.1298 5.8885 -0.1690 28 6 4.2890 5.5428 0.5054 29 1 -0.3633 0.5890 -0.8422 30 1 -0.3634 -1.0238 -0.0891 31 1 -0.3634 0.4348 0.9311 32 1 1.8932 -0.5138 0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 3.9014 0.8831 0.6793 35 1 3.7456 1.0806 -1.0828 36 1 4.8507 3.0607 -0.3474 37 1 3.1539 3.5482 -0.5745 38 1 1.8765 4.2595 1.2879 39 1 1.8401 2.5298 1.7066 40 1 2.5357 1.9118 3.9559 41 1 1.4036 5.0926 6.7765 42 1 6.3878 4.1819 2.6862 43 1 6.2599 3.4241 1.0637 44 1 7.4782 5.3384 0.4224 45 1 6.8594 6.3083 1.7920 46 1 6.4753 7.4827 -1.1779 47 1 4.4140 8.0933 -2.3732 48 1 2.2677 7.0712 -1.7262 49 1 2.1886 5.4405 0.1136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000931259433.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:40 Heat of formation + Delta-G solvation = -63.453819 kcal Electronic energy + Delta-G solvation = -28585.997805 eV Core-core repulsion = 24899.015042 eV Total energy + Delta-G solvation = -3686.982763 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.38812 -38.08707 -36.83866 -35.29930 -34.09706 -32.05570 -31.53292 -30.51105 -29.21357 -28.75837 -27.62080 -25.80809 -23.94412 -22.62819 -22.48771 -21.64551 -20.95674 -20.58265 -19.11378 -16.97963 -16.59384 -16.29698 -16.05618 -15.44653 -15.00360 -14.86676 -14.58227 -14.36617 -14.18909 -14.04798 -13.61414 -13.32245 -13.17476 -12.92038 -12.61230 -12.42848 -12.38687 -12.26353 -11.80234 -11.43605 -11.34832 -11.26957 -11.15501 -11.09344 -11.00670 -10.87891 -10.79073 -10.75119 -10.61202 -10.35565 -10.23069 -10.01549 -9.33901 -8.84807 -8.57139 -8.49152 -8.23831 -8.00179 -7.55676 -5.96424 -4.10828 1.55462 1.59134 3.31600 3.38350 3.40911 3.90460 3.94956 4.35692 4.50323 4.65937 4.92513 5.14774 5.15946 5.20047 5.26558 5.32118 5.33539 5.40055 5.46688 5.48373 5.54820 5.56330 5.66261 5.69370 5.71599 5.81963 5.95199 6.00673 6.01583 6.04850 6.15112 6.21009 6.25818 6.29182 6.37014 6.37976 6.48901 6.58236 6.65028 6.66273 6.79643 6.89064 7.08965 7.21100 7.44770 7.65443 7.74169 7.87048 7.98415 8.31506 8.94076 9.51608 9.67793 11.09500 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008961 B = 0.005347 C = 0.004141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3123.920255 B = 5235.054644 C = 6759.807398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.380 6.380 4 C 0.068 3.932 5 C 0.053 3.947 6 N -0.512 5.512 7 C 0.023 3.977 8 C 0.232 3.768 9 H 0.058 0.942 10 O -0.561 6.561 11 C -0.566 4.566 12 H 0.054 0.946 13 C 0.082 3.918 14 N -0.865 5.865 15 Si 0.886 3.114 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.114 3.886 20 H 0.112 0.888 21 C -0.105 4.105 22 C -0.083 4.083 23 C -0.097 4.097 24 C -0.114 4.114 25 C -0.126 4.126 26 C -0.124 4.124 27 C -0.101 4.101 28 C -0.109 4.109 29 H 0.059 0.941 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.048 0.952 33 H 0.039 0.961 34 H 0.059 0.941 35 H 0.042 0.958 36 H 0.077 0.923 37 H 0.045 0.955 38 H 0.028 0.972 39 H 0.086 0.914 40 H 0.341 0.659 41 H 0.260 0.740 42 H 0.081 0.919 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.079 0.921 46 H 0.114 0.886 47 H 0.117 0.883 48 H 0.119 0.881 49 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.892 -2.800 -14.884 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.300 6.300 4 C -0.008 4.008 5 C -0.075 4.075 6 N -0.234 5.234 7 C -0.103 4.103 8 C 0.175 3.825 9 H 0.075 0.925 10 O -0.363 6.363 11 C -0.604 4.604 12 H 0.072 0.928 13 C -0.124 4.124 14 N -0.501 5.501 15 Si 0.714 3.286 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.199 1.199 19 C 0.005 3.995 20 H 0.130 0.870 21 C -0.143 4.143 22 C -0.120 4.120 23 C -0.098 4.098 24 C -0.132 4.132 25 C -0.144 4.144 26 C -0.142 4.142 27 C -0.119 4.119 28 C -0.111 4.111 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.066 0.934 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.060 0.940 36 H 0.095 0.905 37 H 0.063 0.937 38 H 0.046 0.954 39 H 0.105 0.895 40 H 0.184 0.816 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.097 0.903 46 H 0.132 0.868 47 H 0.135 0.865 48 H 0.137 0.863 49 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 7.409 -2.461 -14.180 16.187 hybrid contribution -1.717 0.210 -0.471 1.792 sum 5.692 -2.251 -14.651 15.878 Atomic orbital electron populations 1.21739 0.94051 1.01676 1.03438 1.22376 0.95441 0.84443 0.99515 1.87985 1.21701 1.25707 1.94585 1.22541 0.81547 0.97639 0.99118 1.22167 1.00311 0.94056 0.90991 1.62327 1.15037 1.29493 1.16511 1.23319 0.85928 1.01383 0.99711 1.19438 0.92616 0.87426 0.83036 0.92465 1.86566 1.62414 1.17741 1.69536 1.21638 0.92846 1.47812 0.98107 0.92801 1.24987 0.96662 0.93843 0.96896 1.70033 1.31101 1.41899 1.07095 0.86721 0.85554 0.77739 0.78619 1.20526 1.21259 1.19921 1.21547 0.94027 0.87538 0.96359 0.87007 1.22305 0.93920 0.96500 1.01540 1.21090 0.96012 0.97499 0.97407 1.20607 0.96009 0.97060 0.96111 1.20542 0.98136 0.98284 0.96260 1.20944 0.92707 1.00503 1.00266 1.21023 0.97756 0.97532 0.97919 1.20946 0.98042 0.97332 0.95598 1.21474 0.93332 0.98342 0.97919 0.92170 0.91631 0.91373 0.93356 0.94273 0.92262 0.94020 0.90459 0.93703 0.95419 0.89548 0.81621 0.93044 0.90078 0.90853 0.91174 0.90251 0.86793 0.86454 0.86320 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 10.28 37.15 0.38 -1.42 16 2 C 0.06 0.75 6.66 37.15 0.25 1.00 16 3 O -0.38 -5.96 7.92 -35.23 -0.28 -6.24 16 4 C 0.07 0.97 6.08 37.16 0.23 1.19 16 5 C 0.05 0.81 4.16 -3.82 -0.02 0.80 16 6 N -0.51 -9.14 4.32 -226.79 -0.98 -10.11 16 7 C 0.02 0.49 4.08 -3.82 -0.02 0.47 16 8 C 0.23 5.88 2.52 -27.89 -0.07 5.81 16 9 H 0.06 1.61 5.89 -51.93 -0.31 1.30 16 10 O -0.56 -14.49 13.03 -35.23 -0.46 -14.94 16 11 C -0.57 -15.69 8.75 -34.44 -0.30 -15.99 16 12 H 0.05 1.48 7.75 -52.49 -0.41 1.07 16 13 C 0.08 2.31 5.41 -17.82 -0.10 2.22 16 14 N -0.86 -25.83 13.15 55.43 0.73 -25.11 16 15 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 19 C 0.11 1.99 2.73 -67.83 -0.19 1.81 16 20 H 0.11 2.36 5.47 -51.93 -0.28 2.08 16 21 C -0.10 -1.51 6.50 -25.32 -0.16 -1.67 16 22 C -0.08 -1.05 6.77 -26.85 -0.18 -1.23 16 23 C -0.10 -1.41 6.14 -104.21 -0.64 -2.05 16 24 C -0.11 -1.48 10.04 -39.54 -0.40 -1.88 16 25 C -0.13 -1.60 10.05 -39.62 -0.40 -2.00 16 26 C -0.12 -1.74 10.05 -39.62 -0.40 -2.14 16 27 C -0.10 -1.65 7.88 -39.53 -0.31 -1.97 16 28 C -0.11 -1.79 4.44 -104.21 -0.46 -2.25 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.08 1.10 6.63 -51.93 -0.34 0.75 16 37 H 0.04 0.74 6.05 -51.93 -0.31 0.43 16 38 H 0.03 0.60 5.37 -51.93 -0.28 0.32 16 39 H 0.09 1.85 5.72 -51.93 -0.30 1.55 16 40 H 0.34 7.93 9.02 45.56 0.41 8.34 16 41 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 42 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 43 H 0.07 1.00 6.91 -51.93 -0.36 0.64 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.11 1.21 8.06 -52.49 -0.42 0.78 16 47 H 0.12 1.18 8.06 -52.48 -0.42 0.75 16 48 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 49 H 0.12 2.19 5.55 -52.49 -0.29 1.90 16 LS Contribution 380.08 15.07 5.73 5.73 Total: -1.00 -31.04 380.08 -10.17 -41.20 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -7.10 Total: 12.28 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: -2.78 Total: -19.31 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.25 Total: -35.22 kcal Atomic # 8 Polarization: -20.44 SS G_CDS: -0.74 Total: -21.18 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.04 -10.17 -41.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000931259433.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.251 kcal (2) G-P(sol) polarization free energy of solvation -31.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds