Wall clock time and date at job start Tue Mar 31 2020 13:28:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42901 * 109.47133 * 2 1
4 4 C 1.42900 * 113.99957 * 179.97438 * 3 2 1
5 5 C 1.53000 * 109.47127 * 180.02562 * 4 3 2
6 6 C 1.53111 * 109.52355 * 65.31815 * 5 4 3
7 7 C 1.53045 * 109.27858 * 177.55907 * 6 5 4
8 8 N 1.46842 * 109.52190 * 300.81925 * 7 6 5
9 9 C 1.46899 * 110.99918 * 185.83618 * 8 7 6
10 10 C 1.50696 * 109.47330 * 169.99934 * 9 8 7
11 11 C 1.38304 * 119.93112 * 269.73015 * 10 9 8
12 12 C 1.38105 * 120.06471 * 179.72268 * 11 10 9
13 13 C 1.38881 * 119.93314 * 0.54712 * 12 11 10
14 14 O 1.35751 * 120.06867 * 179.74962 * 13 12 11
15 15 C 1.34830 * 116.99865 * 174.44298 * 14 13 12
16 16 H 1.08001 * 120.00024 * 5.05651 * 15 14 13
17 17 C 1.38654 * 119.99812 * 185.05152 * 15 14 13
18 18 N 1.31553 * 120.00225 * 0.02562 * 17 15 14
19 19 Si 1.86801 * 119.99914 * 179.97438 * 17 15 14
20 20 H 1.48506 * 109.46704 * 60.00332 * 19 17 15
21 21 H 1.48494 * 109.47238 * 180.02562 * 19 17 15
22 22 H 1.48492 * 109.47173 * 300.00583 * 19 17 15
23 23 C 1.38881 * 119.86173 * 359.72627 * 13 12 11
24 24 C 1.38098 * 119.92943 * 359.97438 * 23 13 12
25 25 C 1.46845 * 111.19901 * 61.74160 * 8 7 6
26 26 C 1.53039 * 109.52278 * 298.25621 * 25 8 7
27 27 H 1.09003 * 109.47193 * 179.97438 * 1 2 3
28 28 H 1.08994 * 109.47067 * 300.00058 * 1 2 3
29 29 H 1.08999 * 109.47004 * 60.00201 * 1 2 3
30 30 H 1.09004 * 109.47483 * 239.99524 * 2 1 3
31 31 H 1.08999 * 109.47004 * 119.99799 * 2 1 3
32 32 H 1.08999 * 109.47389 * 59.99572 * 4 3 2
33 33 H 1.09006 * 109.47074 * 300.00203 * 4 3 2
34 34 H 1.08995 * 109.57543 * 305.15392 * 5 4 3
35 35 H 1.08998 * 109.50705 * 57.61836 * 6 5 4
36 36 H 1.09000 * 109.50077 * 297.49990 * 6 5 4
37 37 H 1.08994 * 109.46117 * 180.80201 * 7 6 5
38 38 H 1.09000 * 109.45574 * 60.83759 * 7 6 5
39 39 H 1.08997 * 109.47461 * 290.00233 * 9 8 7
40 40 H 1.09004 * 109.47017 * 49.99795 * 9 8 7
41 41 H 1.07992 * 119.96741 * 0.02562 * 11 10 9
42 42 H 1.07997 * 120.03064 * 180.27228 * 12 11 10
43 43 H 0.96992 * 120.00145 * 179.97438 * 18 17 15
44 44 H 1.07992 * 120.03632 * 179.97438 * 23 13 12
45 45 H 1.08006 * 119.96818 * 180.02562 * 24 23 13
46 46 H 1.09000 * 109.46242 * 58.27012 * 25 8 7
47 47 H 1.09003 * 109.46487 * 178.24859 * 25 8 7
48 48 H 1.09003 * 109.50430 * 179.12001 * 26 25 8
49 49 H 1.08993 * 109.50512 * 299.19581 * 26 25 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4309 1.4601 0.0006
5 6 3.8254 2.9384 0.0012
6 6 3.3746 3.5877 1.3124
7 6 3.8254 5.0502 1.3332
8 7 5.2873 5.1148 1.2114
9 6 5.7680 6.4942 1.3663
10 6 7.2705 6.4927 1.4817
11 6 7.8671 6.3957 2.7257
12 6 9.2438 6.3883 2.8341
13 6 10.0294 6.4897 1.6933
14 8 11.3829 6.4878 1.7972
15 6 12.0851 6.4729 0.6462
16 1 11.5711 6.5456 -0.3009
17 6 13.4670 6.3643 0.6786
18 7 14.0930 6.2754 1.8322
19 14 14.4398 6.3430 -0.9160
20 1 14.1963 7.6042 -1.6612
21 1 15.8878 6.2193 -0.6109
22 1 14.0084 5.1879 -1.7436
23 6 9.4273 6.5926 0.4460
24 6 8.0501 6.5933 0.3437
25 6 5.7401 4.5396 -0.0616
26 6 5.3465 3.0620 -0.1240
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 1.8934 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 3.8340 0.9764 -0.8891
33 1 3.8333 0.9766 0.8908
34 1 3.3486 3.4439 -0.8385
35 1 3.8210 3.0574 2.1536
36 1 2.2882 3.5407 1.3871
37 1 3.5184 5.5115 2.2717
38 1 3.3675 5.5831 0.4998
39 1 5.4709 7.0822 0.4980
40 1 5.3350 6.9310 2.2663
41 1 7.2557 6.3209 3.6127
42 1 9.7091 6.3081 3.8054
43 1 15.0596 6.1990 1.8548
44 1 10.0354 6.6720 -0.4428
45 1 7.5813 6.6728 -0.6260
46 1 5.2733 5.0750 -0.8884
47 1 6.8238 4.6301 -0.1361
48 1 5.6689 2.6394 -1.0756
49 1 5.8245 2.5232 0.6940
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001137120390.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:28:20
Heat of formation + Delta-G solvation = -60.965930 kcal
Electronic energy + Delta-G solvation = -26328.871065 eV
Core-core repulsion = 22641.996186 eV
Total energy + Delta-G solvation = -3686.874880 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.70 seconds
Orbital eigenvalues (eV)
-39.63339 -38.88016 -37.96575 -36.51426 -34.18103 -32.29012 -31.49251 -30.94512
-30.09749 -29.69035 -27.03802 -25.45241 -24.10598 -23.33323 -22.90127 -21.93409
-21.67302 -20.26665 -19.72469 -17.94780 -16.95006 -16.80853 -16.40276 -15.97586
-15.12816 -14.97835 -14.91095 -14.53692 -14.32988 -14.14624 -13.87900 -13.58119
-13.45188 -13.37565 -12.94077 -12.84079 -12.66069 -12.56525 -12.49110 -12.02572
-11.82851 -11.64796 -11.59342 -11.36173 -11.25063 -11.18598 -10.83900 -10.76356
-10.68530 -10.59980 -10.42134 -10.34319 -10.21314 -9.83179 -9.31206 -8.81349
-8.19641 -8.09978 -7.14041 -6.43261 -4.02147 2.25181 2.31920 3.13511
3.14502 3.17412 3.38214 3.97616 4.05317 4.57682 4.64554 4.68945
4.71537 4.80317 4.91051 5.02625 5.10210 5.15080 5.19016 5.21689
5.30910 5.32001 5.34386 5.42369 5.47077 5.51086 5.55634 5.59065
5.68122 5.73318 5.76818 5.80346 5.85570 5.88546 5.95783 6.00908
6.09919 6.17535 6.24828 6.33036 6.46305 6.74243 6.93408 6.95381
7.05546 7.20621 7.23906 7.32600 7.44019 7.47682 7.86444 8.01721
9.02293 9.73214 10.74764
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.019662 B = 0.002245 C = 0.002109
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1423.742371 B =12470.739847 C =13271.816076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.057 3.943
3 O -0.389 6.389
4 C 0.068 3.932
5 C -0.085 4.085
6 C -0.105 4.105
7 C 0.055 3.945
8 N -0.532 5.532
9 C 0.113 3.887
10 C -0.177 4.177
11 C -0.053 4.053
12 C -0.194 4.194
13 C 0.155 3.845
14 O -0.179 6.179
15 C -0.391 4.391
16 H 0.091 0.909
17 C 0.039 3.961
18 N -0.863 5.863
19 Si 0.940 3.060
20 H -0.270 1.270
21 H -0.278 1.278
22 H -0.270 1.270
23 C -0.234 4.234
24 C -0.067 4.067
25 C 0.055 3.945
26 C -0.110 4.110
27 H 0.069 0.931
28 H 0.062 0.938
29 H 0.062 0.938
30 H 0.046 0.954
31 H 0.047 0.953
32 H 0.047 0.953
33 H 0.050 0.950
34 H 0.073 0.927
35 H 0.069 0.931
36 H 0.070 0.930
37 H 0.072 0.928
38 H 0.028 0.972
39 H 0.030 0.970
40 H 0.073 0.927
41 H 0.111 0.889
42 H 0.116 0.884
43 H 0.270 0.730
44 H 0.125 0.875
45 H 0.102 0.898
46 H 0.027 0.973
47 H 0.089 0.911
48 H 0.065 0.935
49 H 0.074 0.926
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.988 -8.323 -4.080 24.786
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.020 4.020
3 O -0.308 6.308
4 C -0.008 4.008
5 C -0.104 4.104
6 C -0.143 4.143
7 C -0.073 4.073
8 N -0.257 5.257
9 C -0.013 4.013
10 C -0.178 4.178
11 C -0.072 4.072
12 C -0.213 4.213
13 C 0.102 3.898
14 O -0.082 6.082
15 C -0.468 4.468
16 H 0.108 0.892
17 C -0.165 4.165
18 N -0.498 5.498
19 Si 0.765 3.235
20 H -0.195 1.195
21 H -0.203 1.203
22 H -0.195 1.195
23 C -0.254 4.254
24 C -0.086 4.086
25 C -0.073 4.073
26 C -0.148 4.148
27 H 0.088 0.912
28 H 0.082 0.918
29 H 0.081 0.919
30 H 0.064 0.936
31 H 0.065 0.935
32 H 0.065 0.935
33 H 0.068 0.932
34 H 0.091 0.909
35 H 0.087 0.913
36 H 0.088 0.912
37 H 0.091 0.909
38 H 0.046 0.954
39 H 0.049 0.951
40 H 0.091 0.909
41 H 0.129 0.871
42 H 0.134 0.866
43 H 0.080 0.920
44 H 0.143 0.857
45 H 0.120 0.880
46 H 0.045 0.955
47 H 0.107 0.893
48 H 0.084 0.916
49 H 0.092 0.908
Dipole moment (debyes) X Y Z Total
from point charges -22.509 -8.457 -3.423 24.288
hybrid contribution 0.373 0.171 -1.565 1.618
sum -22.136 -8.286 -4.987 24.157
Atomic orbital electron populations
1.21738 0.93853 1.02132 1.03098 1.22434 0.95510 0.84091 0.99973
1.87874 1.21454 1.26096 1.95418 1.22573 0.80851 0.97303 1.00117
1.21197 0.96225 0.93839 0.99142 1.21558 1.00514 0.95085 0.97121
1.22084 0.87977 0.96721 1.00519 1.61979 1.09816 1.19868 1.34036
1.20777 0.92663 0.87780 1.00097 1.19073 0.93367 1.11922 0.93470
1.20451 0.93216 0.97230 0.96261 1.20219 0.92786 1.11306 0.97028
1.19395 0.85034 0.92265 0.93156 1.83980 1.11758 1.79005 1.33467
1.21261 0.88951 1.52446 0.84127 0.89190 1.25276 0.95834 0.96563
0.98846 1.70025 1.09450 1.45783 1.24548 0.85797 0.78499 0.79135
0.80088 1.19543 1.20291 1.19537 1.21109 0.94659 1.11663 0.97932
1.20589 0.93178 0.98100 0.96684 1.22108 1.01809 0.93904 0.89434
1.21576 0.93941 0.97034 1.02203 0.91228 0.91844 0.91937 0.93607
0.93486 0.93477 0.93156 0.90882 0.91260 0.91187 0.90923 0.95394
0.95140 0.90879 0.87105 0.86621 0.92004 0.85711 0.87996 0.95477
0.89308 0.91606 0.90757
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.95 10.28 37.16 0.38 -0.57 16
2 C 0.06 0.43 6.66 37.16 0.25 0.68 16
3 O -0.39 -3.95 9.94 -35.23 -0.35 -4.30 16
4 C 0.07 0.64 5.32 37.16 0.20 0.83 16
5 C -0.09 -0.86 2.49 -90.50 -0.23 -1.09 16
6 C -0.10 -1.09 5.25 -26.65 -0.14 -1.23 16
7 C 0.05 0.61 5.46 -3.83 -0.02 0.59 16
8 N -0.53 -7.00 4.65 -236.12 -1.10 -8.10 16
9 C 0.11 1.57 5.12 -4.98 -0.03 1.54 16
10 C -0.18 -3.02 4.89 -104.57 -0.51 -3.53 16
11 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16
12 C -0.19 -4.14 9.99 -39.39 -0.39 -4.54 16
13 C 0.16 3.77 6.65 -39.11 -0.26 3.51 16
14 O -0.18 -5.13 9.76 0.05 0.00 -5.13 16
15 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16
16 H 0.09 2.33 5.20 -52.49 -0.27 2.05 16
17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16
18 N -0.86 -25.40 13.67 55.48 0.76 -24.64 16
19 Si 0.94 20.56 29.55 -169.99 -5.02 15.54 16
20 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16
21 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16
22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16
23 C -0.23 -5.08 9.17 -39.40 -0.36 -5.44 16
24 C -0.07 -1.21 7.86 -39.61 -0.31 -1.52 16
25 C 0.06 0.71 5.15 -3.83 -0.02 0.69 16
26 C -0.11 -1.20 5.38 -26.65 -0.14 -1.35 16
27 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16
28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16
30 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16
31 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16
32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16
33 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16
34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16
36 H 0.07 0.70 7.91 -51.93 -0.41 0.29 16
37 H 0.07 0.75 8.01 -51.93 -0.42 0.33 16
38 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16
39 H 0.03 0.41 8.07 -51.93 -0.42 -0.01 16
40 H 0.07 0.93 7.93 -51.93 -0.41 0.52 16
41 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16
42 H 0.12 2.40 8.06 -52.49 -0.42 1.98 16
43 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16
44 H 0.13 2.71 5.64 -52.49 -0.30 2.42 16
45 H 0.10 1.61 7.95 -52.48 -0.42 1.19 16
46 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16
47 H 0.09 1.31 5.74 -51.93 -0.30 1.02 16
48 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16
49 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
LS Contribution 389.96 15.07 5.88 5.88
Total: -1.00 -30.46 389.96 -10.03 -40.49
By element:
Atomic # 1 Polarization: 11.14 SS G_CDS: -8.42 Total: 2.72 kcal
Atomic # 6 Polarization: -20.68 SS G_CDS: -1.77 Total: -22.45 kcal
Atomic # 7 Polarization: -32.40 SS G_CDS: -0.34 Total: -32.74 kcal
Atomic # 8 Polarization: -9.08 SS G_CDS: -0.35 Total: -9.43 kcal
Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal
Total LS contribution 5.88 Total: 5.88 kcal
Total: -30.46 -10.03 -40.49 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001137120390.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.476 kcal
(2) G-P(sol) polarization free energy of solvation -30.463 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.939 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.027 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.490 kcal
(6) G-S(sol) free energy of system = (1) + (5) -60.966 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.70 seconds