Wall clock time and date at job start Tue Mar 31 2020 13:28:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 O 1.42901 * 109.47133 * 2 1
4 4 C 1.42900 * 113.99957 * 179.97438 * 3 2 1
5 5 C 1.53000 * 109.47127 * 180.02562 * 4 3 2
6 6 C 1.53111 * 109.52355 * 65.31815 * 5 4 3
7 7 C 1.53045 * 109.27858 * 177.55907 * 6 5 4
8 8 N 1.46842 * 109.52190 * 300.81925 * 7 6 5
9 9 C 1.46899 * 110.99918 * 185.83618 * 8 7 6
10 10 C 1.50696 * 109.47330 * 169.99934 * 9 8 7
11 11 C 1.38304 * 119.93112 * 269.73015 * 10 9 8
12 12 C 1.38105 * 120.06471 * 179.72268 * 11 10 9
13 13 C 1.38881 * 119.93314 * 0.54712 * 12 11 10
14 14 O 1.35751 * 120.06867 * 179.74962 * 13 12 11
15 15 C 1.34830 * 116.99865 * 174.44298 * 14 13 12
16 16 H 1.08001 * 120.00024 * 5.05651 * 15 14 13
17 17 C 1.38654 * 119.99812 * 185.05152 * 15 14 13
18 18 N 1.31553 * 120.00225 * 0.02562 * 17 15 14
19 19 Si 1.86801 * 119.99914 * 179.97438 * 17 15 14
20 20 H 1.48506 * 109.46704 * 60.00332 * 19 17 15
21 21 H 1.48494 * 109.47238 * 180.02562 * 19 17 15
22 22 H 1.48492 * 109.47173 * 300.00583 * 19 17 15
23 23 C 1.38881 * 119.86173 * 359.72627 * 13 12 11
24 24 C 1.38098 * 119.92943 * 359.97438 * 23 13 12
25 25 C 1.46845 * 111.19901 * 61.74160 * 8 7 6
26 26 C 1.53039 * 109.52278 * 298.25621 * 25 8 7
27 27 H 1.09003 * 109.47193 * 179.97438 * 1 2 3
28 28 H 1.08994 * 109.47067 * 300.00058 * 1 2 3
29 29 H 1.08999 * 109.47004 * 60.00201 * 1 2 3
30 30 H 1.09004 * 109.47483 * 239.99524 * 2 1 3
31 31 H 1.08999 * 109.47004 * 119.99799 * 2 1 3
32 32 H 1.08999 * 109.47389 * 59.99572 * 4 3 2
33 33 H 1.09006 * 109.47074 * 300.00203 * 4 3 2
34 34 H 1.08995 * 109.57543 * 305.15392 * 5 4 3
35 35 H 1.08998 * 109.50705 * 57.61836 * 6 5 4
36 36 H 1.09000 * 109.50077 * 297.49990 * 6 5 4
37 37 H 1.08994 * 109.46117 * 180.80201 * 7 6 5
38 38 H 1.09000 * 109.45574 * 60.83759 * 7 6 5
39 39 H 1.08997 * 109.47461 * 290.00233 * 9 8 7
40 40 H 1.09004 * 109.47017 * 49.99795 * 9 8 7
41 41 H 1.07992 * 119.96741 * 0.02562 * 11 10 9
42 42 H 1.07997 * 120.03064 * 180.27228 * 12 11 10
43 43 H 0.96992 * 120.00145 * 179.97438 * 18 17 15
44 44 H 1.07992 * 120.03632 * 179.97438 * 23 13 12
45 45 H 1.08006 * 119.96818 * 180.02562 * 24 23 13
46 46 H 1.09000 * 109.46242 * 58.27012 * 25 8 7
47 47 H 1.09003 * 109.46487 * 178.24859 * 25 8 7
48 48 H 1.09003 * 109.50430 * 179.12001 * 26 25 8
49 49 H 1.08993 * 109.50512 * 299.19581 * 26 25 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0063 1.3473 0.0000
4 6 3.4309 1.4601 0.0006
5 6 3.8254 2.9384 0.0012
6 6 3.3746 3.5877 1.3124
7 6 3.8254 5.0502 1.3332
8 7 5.2873 5.1148 1.2114
9 6 5.7680 6.4942 1.3663
10 6 7.2705 6.4927 1.4817
11 6 7.8671 6.3957 2.7257
12 6 9.2438 6.3883 2.8341
13 6 10.0294 6.4897 1.6933
14 8 11.3829 6.4878 1.7972
15 6 12.0851 6.4729 0.6462
16 1 11.5711 6.5456 -0.3009
17 6 13.4670 6.3643 0.6786
18 7 14.0930 6.2754 1.8322
19 14 14.4398 6.3430 -0.9160
20 1 14.1963 7.6042 -1.6612
21 1 15.8878 6.2193 -0.6109
22 1 14.0084 5.1879 -1.7436
23 6 9.4273 6.5926 0.4460
24 6 8.0501 6.5933 0.3437
25 6 5.7401 4.5396 -0.0616
26 6 5.3465 3.0620 -0.1240
27 1 -0.3634 -1.0277 -0.0005
28 1 -0.3633 0.5138 0.8899
29 1 -0.3633 0.5138 -0.8900
30 1 1.8934 -0.5139 -0.8899
31 1 1.8933 -0.5138 0.8900
32 1 3.8340 0.9764 -0.8891
33 1 3.8333 0.9766 0.8908
34 1 3.3486 3.4439 -0.8385
35 1 3.8210 3.0574 2.1536
36 1 2.2882 3.5407 1.3871
37 1 3.5184 5.5115 2.2717
38 1 3.3675 5.5831 0.4998
39 1 5.4709 7.0822 0.4980
40 1 5.3350 6.9310 2.2663
41 1 7.2557 6.3209 3.6127
42 1 9.7091 6.3081 3.8054
43 1 15.0596 6.1990 1.8548
44 1 10.0354 6.6720 -0.4428
45 1 7.5813 6.6728 -0.6260
46 1 5.2733 5.0750 -0.8884
47 1 6.8238 4.6301 -0.1361
48 1 5.6689 2.6394 -1.0756
49 1 5.8245 2.5232 0.6940
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001137120390.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:28:18
Heat of formation + Delta-G solvation = -78.808886 kcal
Electronic energy + Delta-G solvation = -26329.644794 eV
Core-core repulsion = 22641.996186 eV
Total energy + Delta-G solvation = -3687.648608 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-40.94119 -40.18948 -38.91685 -38.02776 -35.22572 -34.23324 -32.21979 -32.00283
-31.60263 -30.94669 -28.17783 -27.29459 -25.30288 -24.22576 -23.62555 -23.40464
-22.73155 -21.75873 -20.59720 -19.81231 -18.78936 -17.52992 -17.11940 -16.91347
-16.47798 -16.42521 -16.19510 -15.70143 -15.60843 -15.48888 -15.27394 -14.91027
-14.67071 -14.44181 -14.30425 -14.00641 -13.74687 -13.62049 -13.49294 -13.19395
-13.08094 -12.88143 -12.68014 -12.38199 -12.33200 -12.27138 -12.15367 -12.13126
-12.07328 -12.01654 -11.52867 -11.22189 -11.18598 -11.14975 -10.77063 -10.50833
-9.73619 -9.20502 -8.85518 -8.45784 -6.13917 0.62497 0.70388 1.34817
1.45594 1.51164 2.18450 2.72784 2.75990 3.05461 3.34589 3.55024
3.80009 3.85194 3.95594 4.06424 4.07573 4.17679 4.22994 4.30241
4.35397 4.43178 4.46082 4.49256 4.51431 4.51838 4.61072 4.63951
4.71678 4.76446 4.80838 4.87187 4.91013 4.95234 5.02859 5.04323
5.10466 5.11738 5.17034 5.22784 5.27737 5.28787 5.33191 5.48773
5.60439 5.73264 5.83678 6.04218 6.18112 6.24505 6.29788 6.32734
6.98752 7.80481 8.77277
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.019662 B = 0.002245 C = 0.002109
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1423.742371 B =12470.739847 C =13271.816076
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.049 3.951
3 O -0.406 6.406
4 C 0.069 3.931
5 C -0.080 4.080
6 C -0.100 4.100
7 C 0.057 3.943
8 N -0.544 5.544
9 C 0.115 3.885
10 C -0.151 4.151
11 C -0.048 4.048
12 C -0.206 4.206
13 C 0.114 3.886
14 O -0.234 6.234
15 C -0.413 4.413
16 H 0.101 0.899
17 C -0.024 4.024
18 N -0.921 5.921
19 Si 1.018 2.982
20 H -0.257 1.257
21 H -0.272 1.272
22 H -0.258 1.258
23 C -0.242 4.242
24 C -0.061 4.061
25 C 0.054 3.946
26 C -0.105 4.105
27 H 0.087 0.913
28 H 0.058 0.942
29 H 0.058 0.942
30 H 0.053 0.947
31 H 0.052 0.948
32 H 0.054 0.946
33 H 0.051 0.949
34 H 0.072 0.928
35 H 0.061 0.939
36 H 0.074 0.926
37 H 0.083 0.917
38 H 0.035 0.965
39 H 0.045 0.955
40 H 0.092 0.908
41 H 0.144 0.856
42 H 0.111 0.889
43 H 0.272 0.728
44 H 0.117 0.883
45 H 0.133 0.867
46 H 0.036 0.964
47 H 0.066 0.934
48 H 0.076 0.924
49 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -26.188 -8.717 -5.564 28.156
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.027 4.027
3 O -0.326 6.326
4 C -0.007 4.007
5 C -0.099 4.099
6 C -0.138 4.138
7 C -0.070 4.070
8 N -0.269 5.269
9 C -0.012 4.012
10 C -0.152 4.152
11 C -0.066 4.066
12 C -0.225 4.225
13 C 0.063 3.937
14 O -0.141 6.141
15 C -0.489 4.489
16 H 0.118 0.882
17 C -0.221 4.221
18 N -0.559 5.559
19 Si 0.837 3.163
20 H -0.182 1.182
21 H -0.196 1.196
22 H -0.182 1.182
23 C -0.261 4.261
24 C -0.080 4.080
25 C -0.074 4.074
26 C -0.143 4.143
27 H 0.106 0.894
28 H 0.077 0.923
29 H 0.077 0.923
30 H 0.071 0.929
31 H 0.070 0.930
32 H 0.072 0.928
33 H 0.069 0.931
34 H 0.090 0.910
35 H 0.080 0.920
36 H 0.093 0.907
37 H 0.102 0.898
38 H 0.053 0.947
39 H 0.063 0.937
40 H 0.111 0.889
41 H 0.162 0.838
42 H 0.129 0.871
43 H 0.081 0.919
44 H 0.135 0.865
45 H 0.151 0.849
46 H 0.054 0.946
47 H 0.084 0.916
48 H 0.094 0.906
49 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -25.784 -8.853 -4.908 27.700
hybrid contribution 0.970 0.260 -1.040 1.445
sum -24.814 -8.593 -5.948 26.925
Atomic orbital electron populations
1.21752 0.92940 1.03246 1.02664 1.22627 0.96319 0.83165 1.00606
1.87844 1.21634 1.27628 1.95541 1.22534 0.80840 0.96807 1.00514
1.21119 0.95350 0.94424 0.98969 1.21505 1.00685 0.94690 0.96887
1.22124 0.86328 0.97201 1.01356 1.61922 1.11433 1.19164 1.34342
1.20799 0.89767 0.88759 1.01829 1.19569 0.95623 1.07505 0.92478
1.20828 0.91895 0.95696 0.98192 1.20460 0.94245 1.11592 0.96203
1.19928 0.84177 0.94331 0.95231 1.83943 1.13874 1.82080 1.34164
1.21762 0.89737 1.52741 0.84665 0.88193 1.26588 0.96668 0.95889
1.02985 1.70178 1.09788 1.48580 1.27377 0.84660 0.76632 0.79894
0.75108 1.18152 1.19635 1.18199 1.21200 0.96283 1.11955 0.96695
1.20897 0.91671 0.96712 0.98704 1.22089 1.00431 0.95117 0.89720
1.21521 0.94605 0.95845 1.02355 0.89388 0.92287 0.92314 0.92861
0.92954 0.92758 0.93116 0.90988 0.92026 0.90703 0.89837 0.94725
0.93733 0.88927 0.83793 0.87105 0.91886 0.86509 0.84944 0.94561
0.91569 0.90577 0.91879
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16
2 C 0.05 0.66 6.66 71.98 0.48 1.14 16
3 O -0.41 -7.46 9.94 -148.98 -1.48 -8.94 16
4 C 0.07 1.16 5.32 71.98 0.38 1.54 16
5 C -0.08 -1.42 2.49 -10.72 -0.03 -1.45 16
6 C -0.10 -1.79 5.25 30.65 0.16 -1.63 16
7 C 0.06 1.05 5.46 86.33 0.47 1.53 16
8 N -0.54 -12.43 4.65 -900.94 -4.19 -16.62 16
9 C 0.12 2.71 5.12 85.56 0.44 3.15 16
10 C -0.15 -4.71 4.89 -19.83 -0.10 -4.81 16
11 C -0.05 -1.64 9.69 22.25 0.22 -1.42 16
12 C -0.21 -8.95 9.99 22.39 0.22 -8.73 16
13 C 0.11 5.75 6.65 22.58 0.15 5.90 16
14 O -0.23 -14.31 9.76 -22.75 -0.22 -14.54 16
15 C -0.41 -24.33 9.49 67.92 0.64 -23.69 16
16 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16
17 C -0.02 -1.38 5.49 84.83 0.47 -0.91 16
18 N -0.92 -57.13 13.67 21.61 0.30 -56.84 16
19 Si 1.02 43.19 29.55 68.60 2.03 45.22 16
20 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16
21 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16
22 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16
23 C -0.24 -10.63 9.17 22.39 0.21 -10.43 16
24 C -0.06 -2.12 7.86 22.25 0.17 -1.94 16
25 C 0.05 1.24 5.15 86.33 0.44 1.69 16
26 C -0.11 -2.09 5.38 30.65 0.16 -1.92 16
27 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16
28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16
29 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16
30 H 0.05 0.62 8.14 -2.39 -0.02 0.61 16
31 H 0.05 0.63 8.14 -2.39 -0.02 0.62 16
32 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16
33 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16
34 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
36 H 0.07 1.30 7.91 -2.39 -0.02 1.28 16
37 H 0.08 1.38 8.01 -2.39 -0.02 1.36 16
38 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16
39 H 0.04 0.97 8.07 -2.39 -0.02 0.95 16
40 H 0.09 1.89 7.93 -2.38 -0.02 1.87 16
41 H 0.14 4.00 8.06 -2.91 -0.02 3.97 16
42 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16
43 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16
44 H 0.12 5.22 5.64 -2.91 -0.02 5.21 16
45 H 0.13 3.77 7.95 -2.91 -0.02 3.74 16
46 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16
47 H 0.07 1.81 5.74 -2.39 -0.01 1.80 16
48 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16
49 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16
Total: -1.00 -70.27 389.96 2.58 -67.69
By element:
Atomic # 1 Polarization: 25.96 SS G_CDS: 0.91 Total: 26.87 kcal
Atomic # 6 Polarization: -48.08 SS G_CDS: 5.24 Total: -42.85 kcal
Atomic # 7 Polarization: -69.57 SS G_CDS: -3.89 Total: -73.46 kcal
Atomic # 8 Polarization: -21.77 SS G_CDS: -1.70 Total: -23.47 kcal
Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal
Total: -70.27 2.58 -67.69 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001137120390.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.116 kcal
(2) G-P(sol) polarization free energy of solvation -70.269 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.386 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.577 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.693 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.809 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds