Wall clock time and date at job start Tue Mar 31 2020 13:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35991 * 116.99893 * 2 1 4 4 C 1.38564 * 120.07457 * 0.02562 * 3 2 1 5 5 C 1.38248 * 119.99732 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14743 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.92694 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47033 * 89.99745 * 7 6 5 9 9 C 1.46892 * 111.00254 * 293.95714 * 8 7 6 10 10 C 1.46899 * 110.99575 * 169.99736 * 8 7 6 11 11 C 1.50706 * 109.47001 * 190.00075 * 10 8 7 12 12 H 1.07999 * 119.99722 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99820 * 180.02562 * 11 10 8 14 14 N 1.31511 * 120.00150 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99525 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46889 * 90.00031 * 15 13 11 17 17 H 1.48501 * 109.46862 * 209.99914 * 15 13 11 18 18 H 1.48496 * 109.47489 * 329.99945 * 15 13 11 19 19 C 1.38244 * 120.14645 * 359.67715 * 6 5 4 20 20 C 1.38571 * 119.99939 * 0.60064 * 19 6 5 21 21 O 1.35994 * 120.07334 * 179.69632 * 20 19 6 22 22 C 1.42904 * 116.99908 * 5.54901 * 21 20 19 23 23 C 1.54264 * 110.02997 * 273.02239 * 22 21 20 24 24 C 1.54892 * 104.19502 * 217.10476 * 23 22 21 25 25 C 1.54888 * 102.74762 * 37.94601 * 24 23 22 26 26 C 1.53874 * 110.03046 * 155.85618 * 22 21 20 27 27 H 1.09005 * 109.47394 * 60.00147 * 1 2 3 28 28 H 1.09004 * 109.47605 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47072 * 299.99943 * 1 2 3 30 30 H 1.08002 * 120.00170 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.92094 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.46782 * 210.00266 * 7 6 5 33 33 H 1.09003 * 109.46673 * 330.00029 * 7 6 5 34 34 H 1.09001 * 109.47317 * 59.99824 * 9 8 7 35 35 H 1.08999 * 109.47036 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.47043 * 299.99879 * 9 8 7 37 37 H 1.08995 * 109.47984 * 310.00354 * 10 8 7 38 38 H 1.09006 * 109.46732 * 70.00711 * 10 8 7 39 39 H 0.97001 * 119.99562 * 179.97438 * 14 13 11 40 40 H 1.08003 * 120.00229 * 180.31853 * 19 6 5 41 41 H 1.08996 * 110.01630 * 34.46032 * 22 21 20 42 42 H 1.08998 * 110.48914 * 335.78342 * 23 22 21 43 43 H 1.09000 * 110.48861 * 98.42802 * 23 22 21 44 44 H 1.08998 * 110.75824 * 279.62705 * 24 23 22 45 45 H 1.09000 * 110.75506 * 156.25430 * 24 23 22 46 46 H 1.08998 * 110.48582 * 203.38045 * 25 24 23 47 47 H 1.09001 * 110.48712 * 80.73201 * 25 24 23 48 48 H 1.08992 * 110.03006 * 238.56658 * 26 22 21 49 49 H 1.09002 * 110.03269 * 359.95512 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0011 6 6 3.3029 3.6798 0.0005 7 6 3.9837 5.0243 0.0005 8 7 4.2054 5.4608 1.3855 9 6 2.9297 5.7150 2.0680 10 6 5.0724 6.6458 1.4315 11 6 5.4767 6.9174 2.8577 12 1 5.1250 6.2739 3.6505 13 6 6.2955 7.9875 3.1502 14 7 6.7233 8.7714 2.1848 15 14 6.7971 8.3237 4.9180 16 1 8.0556 7.5964 5.2222 17 1 7.0107 9.7815 5.1031 18 1 5.7239 7.8604 5.8338 19 6 4.0603 2.5233 0.0062 20 6 3.4359 1.2862 -0.0001 21 8 4.1795 0.1475 -0.0008 22 6 5.5948 0.2969 0.1283 23 6 6.2326 0.5091 -1.2602 24 6 7.5743 -0.2611 -1.1836 25 6 7.2010 -1.5166 -0.3568 26 6 6.2105 -0.9910 0.7027 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2146 2.3197 0.0014 31 1 1.3342 4.5115 0.0019 32 1 4.9416 4.9464 -0.5137 33 1 3.3536 5.7505 -0.5129 34 1 2.3359 4.8011 2.0805 35 1 3.1230 6.0372 3.0912 36 1 2.3837 6.4959 1.5386 37 1 5.9632 6.4680 0.8290 38 1 4.5325 7.5065 1.0367 39 1 7.2990 9.5244 2.3908 40 1 5.1386 2.5839 0.0110 41 1 5.8231 1.1419 0.7779 42 1 5.5966 0.0906 -2.0402 43 1 6.4111 1.5692 -1.4401 44 1 8.3304 0.3305 -0.6675 45 1 7.9158 -0.5422 -2.1798 46 1 8.0861 -1.9346 0.1226 47 1 6.7212 -2.2621 -0.9909 48 1 6.7383 -0.7709 1.6306 49 1 5.4296 -1.7297 0.8837 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141514481.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:10 Heat of formation + Delta-G solvation = -53.976187 kcal Electronic energy + Delta-G solvation = -27240.904681 eV Core-core repulsion = 23554.332900 eV Total energy + Delta-G solvation = -3686.571782 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.60865 -39.03064 -37.82479 -36.51856 -35.50885 -32.59180 -30.69270 -30.16039 -28.86894 -28.07579 -27.62091 -26.93297 -26.14557 -23.64914 -22.62627 -21.35727 -20.87437 -20.17838 -20.09077 -18.40656 -17.20849 -16.51400 -16.30825 -15.90415 -15.66087 -15.15605 -14.90050 -14.68861 -14.31070 -14.24645 -14.11762 -13.91908 -13.61599 -13.47194 -12.96908 -12.77243 -12.24297 -12.03641 -11.93369 -11.90639 -11.50420 -11.30470 -11.26770 -11.23248 -11.21217 -11.02249 -10.90755 -10.82266 -10.74140 -10.65008 -10.60494 -10.43112 -10.33936 -9.84963 -9.22962 -8.50059 -8.43530 -7.62675 -7.21740 -6.03193 -4.04352 1.46418 1.60099 3.27248 3.31413 3.31949 3.37803 3.41703 3.86096 4.39450 4.42827 4.43591 4.75620 4.85571 4.98154 5.02788 5.07571 5.09638 5.23626 5.24692 5.29006 5.31696 5.33627 5.38133 5.45836 5.48466 5.49832 5.61967 5.72050 5.72742 5.76425 5.87784 5.91842 6.02757 6.08745 6.11108 6.16198 6.25329 6.32323 6.37187 6.43995 6.77324 6.83231 6.89967 7.18137 7.27793 7.33459 7.72420 7.79689 8.07410 8.19764 8.54101 9.03448 9.59840 11.07666 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.003530 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.280835 B = 7929.193233 C = 9722.514180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.310 6.310 3 C 0.085 3.915 4 C -0.173 4.173 5 C -0.113 4.113 6 C -0.055 4.055 7 C 0.091 3.909 8 N -0.534 5.534 9 C 0.035 3.965 10 C 0.192 3.808 11 C -0.506 4.506 12 H 0.063 0.937 13 C 0.055 3.945 14 N -0.899 5.899 15 Si 0.898 3.102 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.274 1.274 19 C -0.151 4.151 20 C 0.101 3.899 21 O -0.301 6.301 22 C 0.077 3.923 23 C -0.148 4.148 24 C -0.124 4.124 25 C -0.122 4.122 26 C -0.121 4.121 27 H 0.051 0.949 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.130 0.870 31 H 0.122 0.878 32 H 0.075 0.925 33 H 0.033 0.967 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.010 0.990 37 H 0.030 0.970 38 H -0.009 1.009 39 H 0.261 0.739 40 H 0.137 0.863 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.067 0.933 48 H 0.077 0.923 49 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.205 -18.967 -7.625 21.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.224 6.224 3 C 0.040 3.960 4 C -0.192 4.192 5 C -0.132 4.132 6 C -0.056 4.056 7 C -0.037 4.037 8 N -0.258 5.258 9 C -0.113 4.113 10 C 0.067 3.933 11 C -0.545 4.545 12 H 0.081 0.919 13 C -0.146 4.146 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 C -0.170 4.170 20 C 0.056 3.944 21 O -0.215 6.215 22 C 0.020 3.980 23 C -0.186 4.186 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.158 4.158 27 H 0.070 0.930 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.147 0.853 31 H 0.140 0.860 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.028 0.972 37 H 0.048 0.952 38 H 0.009 0.991 39 H 0.071 0.929 40 H 0.154 0.846 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.086 0.914 48 H 0.095 0.905 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.820 -19.559 -7.413 22.001 hybrid contribution -0.247 1.388 0.535 1.508 sum -7.067 -18.171 -6.879 20.675 Atomic orbital electron populations 1.22991 0.79186 1.03459 1.01054 1.86138 1.20491 1.26267 1.89520 1.18173 0.89107 0.84917 1.03847 1.20948 0.99470 0.91536 1.07219 1.20769 0.94093 0.96811 1.01566 1.19683 0.92952 0.95131 0.97807 1.21015 0.99021 0.91311 0.92326 1.62138 1.14139 1.38092 1.11469 1.22278 0.90735 0.98013 1.00322 1.19757 0.91093 0.84534 0.97872 1.21162 1.29363 1.11165 0.92782 0.91855 1.24983 0.96170 0.96023 0.97424 1.69958 1.35070 1.17118 1.31750 0.86504 0.78989 0.77187 0.84773 1.20620 1.21324 1.19858 1.21002 1.00559 0.90249 1.05198 1.18168 0.87979 0.86174 1.02120 1.86202 1.18641 1.28487 1.88161 1.23181 0.78414 0.99388 0.96990 1.22951 0.97037 1.01290 0.97313 1.22447 0.96860 0.96475 1.00354 1.22341 0.98637 0.97700 0.97295 1.22192 0.98585 0.96368 0.98667 0.93010 0.88642 0.92900 0.85258 0.85958 0.90610 0.94900 0.93247 0.90818 0.97189 0.95230 0.99085 0.92936 0.84555 0.90093 0.90405 0.90776 0.90995 0.91241 0.91328 0.91417 0.90451 0.90206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.31 -4.29 10.28 -34.21 -0.35 -4.64 16 3 C 0.08 1.25 6.70 -39.12 -0.26 0.99 16 4 C -0.17 -2.30 9.04 -39.46 -0.36 -2.66 16 5 C -0.11 -1.64 7.95 -39.57 -0.31 -1.96 16 6 C -0.05 -0.89 4.88 -104.62 -0.51 -1.40 16 7 C 0.09 1.66 5.11 -4.98 -0.03 1.64 16 8 N -0.53 -11.62 4.74 -245.83 -1.17 -12.78 16 9 C 0.04 0.70 8.95 60.06 0.54 1.24 16 10 C 0.19 5.00 4.72 -4.97 -0.02 4.98 16 11 C -0.51 -14.23 8.46 -34.44 -0.29 -14.52 16 12 H 0.06 1.77 7.12 -52.49 -0.37 1.40 16 13 C 0.06 1.56 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 15 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 19 C -0.15 -2.37 8.44 -39.46 -0.33 -2.70 16 20 C 0.10 1.57 6.65 -39.12 -0.26 1.31 16 21 O -0.30 -4.48 9.49 -34.23 -0.32 -4.80 16 22 C 0.08 0.94 2.80 -25.61 -0.07 0.87 16 23 C -0.15 -1.62 6.13 -25.07 -0.15 -1.77 16 24 C -0.12 -1.12 6.91 -24.74 -0.17 -1.29 16 25 C -0.12 -1.06 6.83 -25.07 -0.17 -1.23 16 26 C -0.12 -1.24 6.61 -25.61 -0.17 -1.41 16 27 H 0.05 0.40 7.67 -51.93 -0.40 0.01 16 28 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 30 H 0.13 1.35 6.30 -52.49 -0.33 1.02 16 31 H 0.12 1.63 8.03 -52.49 -0.42 1.20 16 32 H 0.08 1.36 7.88 -51.93 -0.41 0.95 16 33 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 34 H 0.05 0.88 6.16 -51.93 -0.32 0.56 16 35 H 0.07 1.58 6.76 -51.93 -0.35 1.23 16 36 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 37 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 38 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 39 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 40 H 0.14 2.06 5.38 -52.48 -0.28 1.78 16 41 H 0.08 1.06 6.31 -51.93 -0.33 0.73 16 42 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 43 H 0.07 0.81 7.55 -51.93 -0.39 0.42 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 49 H 0.08 0.85 7.95 -51.93 -0.41 0.44 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -31.55 386.39 -10.17 -41.72 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -8.18 Total: -0.83 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -1.68 Total: -15.21 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: -0.43 Total: -38.71 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.68 Total: -9.44 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.55 -10.17 -41.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141514481.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.256 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds