Wall clock time and date at job start Tue Mar 31 2020 13:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35991 * 116.99893 * 2 1 4 4 C 1.38564 * 120.07457 * 0.02562 * 3 2 1 5 5 C 1.38248 * 119.99732 * 179.97438 * 4 3 2 6 6 C 1.38249 * 120.14743 * 0.02562 * 5 4 3 7 7 C 1.50701 * 119.92694 * 179.97438 * 6 5 4 8 8 N 1.46899 * 109.47033 * 89.99745 * 7 6 5 9 9 C 1.46892 * 111.00254 * 293.95714 * 8 7 6 10 10 C 1.46899 * 110.99575 * 169.99736 * 8 7 6 11 11 C 1.50706 * 109.47001 * 190.00075 * 10 8 7 12 12 H 1.07999 * 119.99722 * 0.02562 * 11 10 8 13 13 C 1.37880 * 119.99820 * 180.02562 * 11 10 8 14 14 N 1.31511 * 120.00150 * 0.02562 * 13 11 10 15 15 Si 1.86802 * 119.99525 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.46889 * 90.00031 * 15 13 11 17 17 H 1.48501 * 109.46862 * 209.99914 * 15 13 11 18 18 H 1.48496 * 109.47489 * 329.99945 * 15 13 11 19 19 C 1.38244 * 120.14645 * 359.67715 * 6 5 4 20 20 C 1.38571 * 119.99939 * 0.60064 * 19 6 5 21 21 O 1.35994 * 120.07334 * 179.69632 * 20 19 6 22 22 C 1.42904 * 116.99908 * 5.54901 * 21 20 19 23 23 C 1.54264 * 110.02997 * 273.02239 * 22 21 20 24 24 C 1.54892 * 104.19502 * 217.10476 * 23 22 21 25 25 C 1.54888 * 102.74762 * 37.94601 * 24 23 22 26 26 C 1.53874 * 110.03046 * 155.85618 * 22 21 20 27 27 H 1.09005 * 109.47394 * 60.00147 * 1 2 3 28 28 H 1.09004 * 109.47605 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47072 * 299.99943 * 1 2 3 30 30 H 1.08002 * 120.00170 * 0.02562 * 4 3 2 31 31 H 1.08002 * 119.92094 * 180.02562 * 5 4 3 32 32 H 1.08999 * 109.46782 * 210.00266 * 7 6 5 33 33 H 1.09003 * 109.46673 * 330.00029 * 7 6 5 34 34 H 1.09001 * 109.47317 * 59.99824 * 9 8 7 35 35 H 1.08999 * 109.47036 * 180.02562 * 9 8 7 36 36 H 1.09004 * 109.47043 * 299.99879 * 9 8 7 37 37 H 1.08995 * 109.47984 * 310.00354 * 10 8 7 38 38 H 1.09006 * 109.46732 * 70.00711 * 10 8 7 39 39 H 0.97001 * 119.99562 * 179.97438 * 14 13 11 40 40 H 1.08003 * 120.00229 * 180.31853 * 19 6 5 41 41 H 1.08996 * 110.01630 * 34.46032 * 22 21 20 42 42 H 1.08998 * 110.48914 * 335.78342 * 23 22 21 43 43 H 1.09000 * 110.48861 * 98.42802 * 23 22 21 44 44 H 1.08998 * 110.75824 * 279.62705 * 24 23 22 45 45 H 1.09000 * 110.75506 * 156.25430 * 24 23 22 46 46 H 1.08998 * 110.48582 * 203.38045 * 25 24 23 47 47 H 1.09001 * 110.48712 * 80.73201 * 25 24 23 48 48 H 1.08992 * 110.03006 * 238.56658 * 26 22 21 49 49 H 1.09002 * 110.03269 * 359.95512 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0011 6 6 3.3029 3.6798 0.0005 7 6 3.9837 5.0243 0.0005 8 7 4.2054 5.4608 1.3855 9 6 2.9297 5.7150 2.0680 10 6 5.0724 6.6458 1.4315 11 6 5.4767 6.9174 2.8577 12 1 5.1250 6.2739 3.6505 13 6 6.2955 7.9875 3.1502 14 7 6.7233 8.7714 2.1848 15 14 6.7971 8.3237 4.9180 16 1 8.0556 7.5964 5.2222 17 1 7.0107 9.7815 5.1031 18 1 5.7239 7.8604 5.8338 19 6 4.0603 2.5233 0.0062 20 6 3.4359 1.2862 -0.0001 21 8 4.1795 0.1475 -0.0008 22 6 5.5948 0.2969 0.1283 23 6 6.2326 0.5091 -1.2602 24 6 7.5743 -0.2611 -1.1836 25 6 7.2010 -1.5166 -0.3568 26 6 6.2105 -0.9910 0.7027 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2146 2.3197 0.0014 31 1 1.3342 4.5115 0.0019 32 1 4.9416 4.9464 -0.5137 33 1 3.3536 5.7505 -0.5129 34 1 2.3359 4.8011 2.0805 35 1 3.1230 6.0372 3.0912 36 1 2.3837 6.4959 1.5386 37 1 5.9632 6.4680 0.8290 38 1 4.5325 7.5065 1.0367 39 1 7.2990 9.5244 2.3908 40 1 5.1386 2.5839 0.0110 41 1 5.8231 1.1419 0.7779 42 1 5.5966 0.0906 -2.0402 43 1 6.4111 1.5692 -1.4401 44 1 8.3304 0.3305 -0.6675 45 1 7.9158 -0.5422 -2.1798 46 1 8.0861 -1.9346 0.1226 47 1 6.7212 -2.2621 -0.9909 48 1 6.7383 -0.7709 1.6306 49 1 5.4296 -1.7297 0.8837 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141514481.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:09 Heat of formation + Delta-G solvation = -71.762662 kcal Electronic energy + Delta-G solvation = -27241.675961 eV Core-core repulsion = 23554.332900 eV Total energy + Delta-G solvation = -3687.343061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.69509 -40.00796 -39.12436 -37.66350 -36.82202 -34.66671 -32.00917 -31.26051 -29.70739 -29.39209 -28.72217 -28.37706 -27.53764 -25.38245 -23.69761 -22.82921 -21.82312 -21.59372 -21.03787 -19.48186 -18.56661 -18.12362 -17.59764 -16.91084 -16.79512 -16.50916 -16.06318 -16.04477 -15.71343 -15.66665 -15.53390 -15.05186 -14.69866 -14.41692 -14.28714 -14.03591 -13.84345 -13.28857 -13.26147 -12.99216 -12.88977 -12.76454 -12.68566 -12.56959 -12.43374 -12.23940 -12.07650 -12.02574 -11.94104 -11.87508 -11.80522 -11.61950 -11.56184 -11.36664 -11.26319 -10.61679 -9.64070 -9.05976 -8.70242 -8.20304 -6.30500 0.32161 0.42731 1.41141 1.42379 1.53548 2.24642 2.39088 2.40230 2.68361 3.12041 3.50685 3.55200 3.59806 3.76775 3.88354 3.94804 4.02411 4.17697 4.31097 4.40098 4.44617 4.45134 4.46553 4.48365 4.51651 4.54450 4.61734 4.69551 4.74240 4.75916 4.76948 4.79297 4.88419 5.01132 5.07425 5.13536 5.14099 5.17717 5.20303 5.24374 5.25782 5.32557 5.42296 5.64058 5.66475 5.72592 6.04240 6.18835 6.32162 6.60606 6.66524 6.85339 7.39106 8.90435 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010546 B = 0.003530 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2654.280835 B = 7929.193233 C = 9722.514180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.330 6.330 3 C 0.081 3.919 4 C -0.164 4.164 5 C -0.113 4.113 6 C -0.072 4.072 7 C 0.096 3.904 8 N -0.543 5.543 9 C 0.041 3.959 10 C 0.208 3.792 11 C -0.523 4.523 12 H 0.061 0.939 13 C 0.003 3.997 14 N -0.934 5.934 15 Si 0.968 3.032 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.265 1.265 19 C -0.157 4.157 20 C 0.086 3.914 21 O -0.312 6.312 22 C 0.069 3.931 23 C -0.146 4.146 24 C -0.120 4.120 25 C -0.116 4.116 26 C -0.120 4.120 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.063 0.937 30 H 0.163 0.837 31 H 0.137 0.863 32 H 0.068 0.932 33 H 0.039 0.961 34 H 0.074 0.926 35 H 0.055 0.945 36 H 0.015 0.985 37 H 0.005 0.995 38 H -0.035 1.035 39 H 0.265 0.735 40 H 0.131 0.869 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.086 0.914 47 H 0.072 0.928 48 H 0.083 0.917 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 -20.394 -7.017 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.036 3.964 4 C -0.182 4.182 5 C -0.131 4.131 6 C -0.073 4.073 7 C -0.031 4.031 8 N -0.267 5.267 9 C -0.107 4.107 10 C 0.082 3.918 11 C -0.562 4.562 12 H 0.079 0.921 13 C -0.195 4.195 14 N -0.574 5.574 15 Si 0.792 3.208 16 H -0.199 1.199 17 H -0.207 1.207 18 H -0.189 1.189 19 C -0.176 4.176 20 C 0.041 3.959 21 O -0.227 6.227 22 C 0.013 3.987 23 C -0.184 4.184 24 C -0.158 4.158 25 C -0.154 4.154 26 C -0.157 4.157 27 H 0.085 0.915 28 H 0.135 0.865 29 H 0.082 0.918 30 H 0.181 0.819 31 H 0.155 0.845 32 H 0.086 0.914 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.034 0.966 37 H 0.023 0.977 38 H -0.017 1.017 39 H 0.073 0.927 40 H 0.149 0.851 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.092 0.908 45 H 0.102 0.898 46 H 0.104 0.896 47 H 0.090 0.910 48 H 0.102 0.898 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.942 -21.010 -6.812 23.471 hybrid contribution 0.006 1.739 0.284 1.763 sum -7.935 -19.270 -6.528 21.839 Atomic orbital electron populations 1.23342 0.76638 1.05432 1.02250 1.86121 1.23166 1.25861 1.89267 1.18409 0.89073 0.85916 1.03047 1.21239 1.01019 0.90332 1.05640 1.20939 0.93305 0.98028 1.00870 1.19507 0.93862 0.93772 1.00142 1.20964 0.99200 0.92731 0.90232 1.62037 1.14925 1.35743 1.14017 1.22230 0.90086 0.99378 0.98994 1.19406 0.90701 0.85243 0.96493 1.21449 1.29689 1.11434 0.93583 0.92083 1.25883 0.95966 0.95662 1.01966 1.70080 1.35640 1.17643 1.34065 0.85405 0.78826 0.77229 0.79302 1.19879 1.20657 1.18936 1.20970 1.00440 0.90559 1.05628 1.18358 0.88812 0.86134 1.02628 1.86185 1.19750 1.28492 1.88229 1.23380 0.77583 1.00033 0.97677 1.22916 0.98044 1.01161 0.96298 1.22459 0.95627 0.96361 1.01332 1.22338 0.98798 0.97476 0.96765 1.22234 0.98802 0.95205 0.99501 0.91543 0.86509 0.91806 0.81948 0.84503 0.91357 0.94319 0.90725 0.92664 0.96620 0.97699 1.01698 0.92653 0.85107 0.91561 0.90926 0.91558 0.90842 0.89841 0.89587 0.90965 0.89802 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 9.81 113.37 1.11 1.38 16 2 O -0.33 -8.53 10.28 -79.58 -0.82 -9.35 16 3 C 0.08 2.29 6.70 22.57 0.15 2.44 16 4 C -0.16 -3.96 9.04 22.35 0.20 -3.76 16 5 C -0.11 -3.07 7.95 22.27 0.18 -2.89 16 6 C -0.07 -2.32 4.88 -19.86 -0.10 -2.42 16 7 C 0.10 3.58 5.11 85.56 0.44 4.01 16 8 N -0.54 -24.10 4.74 -931.66 -4.42 -28.52 16 9 C 0.04 1.63 8.95 127.69 1.14 2.78 16 10 C 0.21 11.21 4.72 85.56 0.40 11.61 16 11 C -0.52 -30.00 8.46 25.60 0.22 -29.78 16 12 H 0.06 3.46 7.12 -2.91 -0.02 3.44 16 13 C 0.00 0.19 5.46 84.66 0.46 0.65 16 14 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 15 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 16 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 17 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 C -0.16 -5.02 8.44 22.35 0.19 -4.83 16 20 C 0.09 2.67 6.65 22.57 0.15 2.82 16 21 O -0.31 -9.40 9.49 -79.62 -0.76 -10.15 16 22 C 0.07 1.74 2.80 31.32 0.09 1.83 16 23 C -0.15 -3.24 6.13 31.67 0.19 -3.05 16 24 C -0.12 -2.06 6.91 31.89 0.22 -1.84 16 25 C -0.12 -1.85 6.83 31.67 0.22 -1.63 16 26 C -0.12 -2.42 6.61 31.32 0.21 -2.21 16 27 H 0.07 0.81 7.67 -2.38 -0.02 0.79 16 28 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 0.83 7.66 -2.39 -0.02 0.81 16 30 H 0.16 2.76 6.30 -2.91 -0.02 2.74 16 31 H 0.14 3.30 8.03 -2.91 -0.02 3.27 16 32 H 0.07 2.58 7.88 -2.39 -0.02 2.56 16 33 H 0.04 1.38 8.06 -2.39 -0.02 1.36 16 34 H 0.07 2.55 6.16 -2.39 -0.01 2.54 16 35 H 0.05 2.37 6.76 -2.39 -0.02 2.35 16 36 H 0.02 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.00 0.28 7.93 -2.39 -0.02 0.26 16 38 H -0.03 -2.01 8.12 -2.38 -0.02 -2.03 16 39 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 40 H 0.13 4.20 5.38 -2.91 -0.02 4.18 16 41 H 0.07 1.83 6.31 -2.39 -0.02 1.82 16 42 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 43 H 0.07 1.53 7.55 -2.39 -0.02 1.52 16 44 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 46 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 47 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 49 H 0.07 1.58 7.95 -2.39 -0.02 1.56 16 Total: -1.00 -68.61 386.39 2.71 -65.89 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.92 Total: 16.53 kcal Atomic # 6 Polarization: -30.35 SS G_CDS: 5.47 Total: -24.88 kcal Atomic # 7 Polarization: -80.43 SS G_CDS: -4.13 Total: -84.57 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: -1.57 Total: -19.51 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -68.61 2.71 -65.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141514481.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.869 kcal (2) G-P(sol) polarization free energy of solvation -68.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds