Wall clock time and date at job start Tue Mar 31 2020 13:59:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35895 * 117.00247 * 2 1 4 4 C 1.38737 * 120.05648 * 179.97438 * 3 2 1 5 5 C 1.38143 * 119.94297 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05529 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.48367 * 339.97919 * 7 6 5 9 9 C 1.53095 * 109.47644 * 100.00304 * 7 6 5 10 10 C 1.53178 * 109.16128 * 177.59134 * 9 7 6 11 11 H 1.08998 * 109.54525 * 183.14873 * 10 9 7 12 12 N 1.46902 * 109.54376 * 62.88594 * 10 9 7 13 13 C 1.46900 * 110.99860 * 154.99900 * 12 10 9 14 14 C 1.53002 * 109.46891 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47308 * 180.02562 * 14 13 12 16 16 C 1.50690 * 109.47215 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00635 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99873 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99965 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00019 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47243 * 89.99901 * 20 18 16 22 22 H 1.48500 * 109.47241 * 210.00193 * 20 18 16 23 23 H 1.48502 * 109.47326 * 329.99899 * 20 18 16 24 24 C 1.53176 * 109.03581 * 303.01796 * 10 9 7 25 25 C 1.53089 * 109.16238 * 56.98336 * 24 10 9 26 26 O 1.42896 * 109.48123 * 219.94212 * 7 6 5 27 27 C 1.38261 * 120.11645 * 0.27334 * 6 5 4 28 28 C 1.38155 * 120.05057 * 359.45353 * 27 6 5 29 29 H 1.09006 * 109.46802 * 60.00359 * 1 2 3 30 30 H 1.09003 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47288 * 300.00433 * 1 2 3 32 32 H 1.08000 * 120.02396 * 359.95185 * 4 3 2 33 33 H 1.07994 * 119.96842 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.52133 * 297.49316 * 9 7 6 35 35 H 1.08997 * 109.52532 * 57.62005 * 9 7 6 36 36 H 1.00902 * 110.99663 * 278.95362 * 12 10 9 37 37 H 1.08998 * 109.47310 * 299.99655 * 13 12 10 38 38 H 1.08996 * 109.46981 * 60.00385 * 13 12 10 39 39 H 1.08997 * 109.47548 * 300.00246 * 14 13 12 40 40 H 1.09002 * 109.47408 * 60.00188 * 14 13 12 41 41 H 1.08997 * 109.47015 * 300.00570 * 15 14 13 42 42 H 1.09002 * 109.46736 * 59.99773 * 15 14 13 43 43 H 0.96995 * 120.00206 * 179.97438 * 19 18 16 44 44 H 1.09006 * 109.51901 * 176.88414 * 24 10 9 45 45 H 1.08990 * 109.52387 * 297.01010 * 24 10 9 46 46 H 1.08992 * 109.48508 * 62.37139 * 25 24 10 47 47 H 1.09003 * 109.48361 * 182.39880 * 25 24 10 48 48 H 1.07999 * 119.97477 * 179.69958 * 27 6 5 49 49 H 1.07997 * 120.02708 * 180.27063 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6756 -0.0016 7 6 3.9863 5.0184 -0.0016 8 1 5.0111 4.9042 0.3515 9 6 3.9964 5.5862 -1.4233 10 6 4.6392 6.9764 -1.4050 11 1 4.5992 7.4099 -2.4043 12 7 6.0383 6.8653 -0.9714 13 6 6.8383 7.9867 -1.4816 14 6 8.2860 7.8367 -1.0098 15 6 9.1191 9.0051 -1.5407 16 6 10.5451 8.8570 -1.0765 17 1 10.8290 8.0137 -0.4644 18 6 11.4875 9.7982 -1.4332 19 7 11.1419 10.8248 -2.1790 20 14 13.2553 9.6143 -0.8585 21 1 14.0221 8.8298 -1.8592 22 1 13.8690 10.9581 -0.7071 23 1 13.2802 8.9089 0.4481 24 6 3.8693 7.8699 -0.4276 25 6 3.8641 7.2140 0.9556 26 8 3.2814 5.9125 0.8619 27 6 1.9212 3.6048 0.0030 28 6 1.2916 2.3750 -0.0021 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 4.0209 0.3798 0.0017 33 1 5.1346 2.5748 0.0000 34 1 4.5713 4.9277 -2.0744 35 1 2.9737 5.6615 -1.7928 36 1 6.1015 6.8038 0.0338 37 1 6.8091 7.9877 -2.5712 38 1 6.4296 8.9249 -1.1063 39 1 8.3148 7.8359 0.0798 40 1 8.6950 6.8985 -1.3847 41 1 9.0903 9.0063 -2.6303 42 1 8.7099 9.9431 -1.1654 43 1 11.8047 11.4872 -2.4296 44 1 4.3533 8.8447 -0.3667 45 1 2.8443 7.9934 -0.7771 46 1 4.8873 7.1286 1.3213 47 1 3.2813 7.8245 1.6453 48 1 1.3344 4.5114 0.0067 49 1 0.2130 2.3201 -0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168594178.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:46 Heat of formation + Delta-G solvation = -75.506141 kcal Electronic energy + Delta-G solvation = -26274.307293 eV Core-core repulsion = 22586.801902 eV Total energy + Delta-G solvation = -3687.505391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.61793 -39.80568 -37.68356 -36.20595 -33.90956 -32.55540 -32.10134 -31.29205 -29.83639 -29.28711 -27.55262 -25.95642 -24.61843 -23.81884 -22.84612 -22.49153 -21.36926 -20.17000 -19.30628 -18.44898 -16.90990 -16.73188 -16.23721 -16.05823 -15.89874 -15.47868 -15.20035 -14.96595 -14.66017 -14.39904 -14.21251 -13.95154 -13.88512 -13.61733 -13.26754 -12.88517 -12.49450 -12.30670 -12.26673 -12.09080 -12.07290 -11.74220 -11.52429 -11.41587 -11.25416 -11.06579 -10.95175 -10.81432 -10.62690 -10.54086 -10.33622 -9.70785 -9.54401 -9.33114 -9.20632 -9.05291 -8.34401 -8.33460 -8.19334 -5.99231 -4.01261 1.11726 1.18281 2.96353 3.32716 3.38758 3.41938 3.42314 3.72267 4.30329 4.48231 4.53143 4.60371 4.63718 4.70358 4.77540 4.78125 4.85129 4.94461 5.01335 5.08280 5.11991 5.18947 5.26631 5.35960 5.36635 5.45275 5.55224 5.65034 5.72931 5.80989 5.83005 5.85781 5.89243 5.98858 6.04491 6.10376 6.15922 6.30750 6.42134 6.51728 6.70640 6.75625 7.09201 7.12589 7.13400 7.30633 7.56799 7.68694 7.83390 8.01043 8.44397 9.05911 9.62704 11.12162 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022524 B = 0.002044 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.819592 B =13696.094958 C =14487.153773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.124 3.876 4 C -0.152 4.152 5 C -0.067 4.067 6 C -0.113 4.113 7 C 0.136 3.864 8 H 0.074 0.926 9 C -0.129 4.129 10 C 0.083 3.917 11 H 0.082 0.918 12 N -0.686 5.686 13 C 0.059 3.941 14 C -0.107 4.107 15 C 0.022 3.978 16 C -0.519 4.519 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.892 3.108 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.274 1.274 24 C -0.188 4.188 25 C 0.063 3.937 26 O -0.378 6.378 27 C -0.054 4.054 28 C -0.212 4.212 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.055 0.945 32 H 0.131 0.869 33 H 0.133 0.867 34 H 0.082 0.918 35 H 0.069 0.931 36 H 0.335 0.665 37 H 0.067 0.933 38 H 0.024 0.976 39 H 0.044 0.956 40 H 0.056 0.944 41 H 0.016 0.984 42 H 0.013 0.987 43 H 0.260 0.740 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.052 0.948 47 H 0.094 0.906 48 H 0.128 0.872 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.359 -16.743 4.520 29.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.171 4.171 5 C -0.085 4.085 6 C -0.113 4.113 7 C 0.078 3.922 8 H 0.092 0.908 9 C -0.167 4.167 10 C -0.028 4.028 11 H 0.101 0.899 12 N -0.318 5.318 13 C -0.070 4.070 14 C -0.145 4.145 15 C -0.015 4.015 16 C -0.557 4.557 17 H 0.073 0.927 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.720 3.280 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.227 4.227 25 C -0.014 4.014 26 O -0.297 6.297 27 C -0.072 4.072 28 C -0.231 4.231 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.151 0.849 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.154 0.846 37 H 0.086 0.914 38 H 0.043 0.957 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.034 0.966 42 H 0.032 0.968 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.070 0.930 47 H 0.112 0.888 48 H 0.146 0.854 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -24.189 -17.256 4.018 29.984 hybrid contribution 0.628 1.095 0.652 1.421 sum -23.561 -16.161 4.670 28.950 Atomic orbital electron populations 1.23046 0.78459 1.03853 1.01391 1.86062 1.21349 1.27121 1.88785 1.19070 0.92425 0.84072 0.96540 1.20377 0.91305 0.98564 1.06834 1.20842 1.00153 0.90673 0.96830 1.19541 0.93793 0.93687 1.04303 1.20797 0.94815 0.86282 0.90277 0.90772 1.22177 1.00879 0.96813 0.96809 1.21617 0.88080 0.94416 0.98666 0.89942 1.60751 1.08110 1.46236 1.16665 1.22163 0.94695 0.90176 0.99920 1.21628 0.92110 1.01326 0.99469 1.19061 0.93889 0.92238 0.96358 1.21257 0.94072 1.08455 1.31940 0.92676 1.25034 0.98936 0.95335 0.95240 1.69962 1.34197 1.12340 1.37078 0.86593 0.84976 0.77287 0.79141 1.20657 1.21264 1.19893 1.22849 1.02253 1.00358 0.97282 1.22529 0.98570 0.83834 0.96483 1.87903 1.53371 1.22184 1.66281 1.20779 0.94038 0.96985 0.95383 1.21227 0.99936 0.92334 1.09584 0.92642 0.88309 0.92656 0.85071 0.84875 0.89963 0.91234 0.84555 0.91414 0.95723 0.93767 0.92529 0.96591 0.96841 0.93052 0.90630 0.90716 0.92983 0.88753 0.85388 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -3.03 10.50 -19.41 -0.20 -3.24 16 3 C 0.12 1.26 6.69 -39.22 -0.26 1.00 16 4 C -0.15 -1.53 9.99 -39.43 -0.39 -1.92 16 5 C -0.07 -0.68 9.66 -39.61 -0.38 -1.06 16 6 C -0.11 -1.21 4.98 -104.60 -0.52 -1.74 16 7 C 0.14 1.49 2.61 -27.83 -0.07 1.42 16 8 H 0.07 0.86 7.24 -51.93 -0.38 0.48 16 9 C -0.13 -1.39 5.09 -26.59 -0.14 -1.53 16 10 C 0.08 0.97 2.88 -67.53 -0.19 0.78 16 11 H 0.08 1.00 7.80 -51.93 -0.41 0.60 16 12 N -0.69 -9.54 5.86 -106.53 -0.62 -10.17 16 13 C 0.06 0.99 5.49 -3.82 -0.02 0.97 16 14 C -0.11 -2.20 5.41 -26.73 -0.14 -2.35 16 15 C 0.02 0.57 4.97 -27.89 -0.14 0.43 16 16 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 17 H 0.05 1.53 7.74 -52.49 -0.41 1.13 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 19 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 20 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 C -0.19 -1.98 5.72 -26.59 -0.15 -2.14 16 25 C 0.06 0.65 6.58 37.20 0.24 0.90 16 26 O -0.38 -4.38 9.71 -35.23 -0.34 -4.72 16 27 C -0.05 -0.55 9.35 -39.60 -0.37 -0.92 16 28 C -0.21 -1.99 9.04 -39.43 -0.36 -2.34 16 29 H 0.05 0.26 7.66 -51.93 -0.40 -0.14 16 30 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.26 7.67 -51.93 -0.40 -0.13 16 32 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 33 H 0.13 1.17 8.03 -52.49 -0.42 0.75 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.33 4.49 5.83 -39.29 -0.23 4.26 16 37 H 0.07 1.17 8.06 -51.93 -0.42 0.75 16 38 H 0.02 0.41 7.43 -51.93 -0.39 0.03 16 39 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.08 0.84 7.43 -51.93 -0.39 0.45 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.55 6.43 -51.93 -0.33 0.22 16 47 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 48 H 0.13 1.22 7.76 -52.49 -0.41 0.82 16 49 H 0.13 0.90 6.30 -52.49 -0.33 0.57 16 LS Contribution 388.08 15.07 5.85 5.85 Total: -1.00 -31.49 388.08 -10.19 -41.67 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -8.26 Total: 1.14 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.32 Total: -20.98 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.11 Total: -36.51 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.55 Total: -7.96 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.49 -10.19 -41.67 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168594178.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.832 kcal (2) G-P(sol) polarization free energy of solvation -31.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds