Wall clock time and date at job start Tue Mar 31 2020 13:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35895 * 117.00247 * 2 1 4 4 C 1.38737 * 120.05648 * 179.97438 * 3 2 1 5 5 C 1.38143 * 119.94297 * 179.97438 * 4 3 2 6 6 C 1.38264 * 120.05529 * 359.97438 * 5 4 3 7 7 C 1.50706 * 119.94114 * 179.97438 * 6 5 4 8 8 H 1.08996 * 109.48367 * 339.97919 * 7 6 5 9 9 C 1.53095 * 109.47644 * 100.00304 * 7 6 5 10 10 C 1.53178 * 109.16128 * 177.59134 * 9 7 6 11 11 H 1.08998 * 109.54525 * 183.14873 * 10 9 7 12 12 N 1.46902 * 109.54376 * 62.88594 * 10 9 7 13 13 C 1.46900 * 110.99860 * 154.99900 * 12 10 9 14 14 C 1.53002 * 109.46891 * 179.97438 * 13 12 10 15 15 C 1.53003 * 109.47308 * 180.02562 * 14 13 12 16 16 C 1.50690 * 109.47215 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00635 * 0.02562 * 16 15 14 18 18 C 1.37887 * 119.99873 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99965 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00019 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47243 * 89.99901 * 20 18 16 22 22 H 1.48500 * 109.47241 * 210.00193 * 20 18 16 23 23 H 1.48502 * 109.47326 * 329.99899 * 20 18 16 24 24 C 1.53176 * 109.03581 * 303.01796 * 10 9 7 25 25 C 1.53089 * 109.16238 * 56.98336 * 24 10 9 26 26 O 1.42896 * 109.48123 * 219.94212 * 7 6 5 27 27 C 1.38261 * 120.11645 * 0.27334 * 6 5 4 28 28 C 1.38155 * 120.05057 * 359.45353 * 27 6 5 29 29 H 1.09006 * 109.46802 * 60.00359 * 1 2 3 30 30 H 1.09003 * 109.47348 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47288 * 300.00433 * 1 2 3 32 32 H 1.08000 * 120.02396 * 359.95185 * 4 3 2 33 33 H 1.07994 * 119.96842 * 180.02562 * 5 4 3 34 34 H 1.08999 * 109.52133 * 297.49316 * 9 7 6 35 35 H 1.08997 * 109.52532 * 57.62005 * 9 7 6 36 36 H 1.00902 * 110.99663 * 278.95362 * 12 10 9 37 37 H 1.08998 * 109.47310 * 299.99655 * 13 12 10 38 38 H 1.08996 * 109.46981 * 60.00385 * 13 12 10 39 39 H 1.08997 * 109.47548 * 300.00246 * 14 13 12 40 40 H 1.09002 * 109.47408 * 60.00188 * 14 13 12 41 41 H 1.08997 * 109.47015 * 300.00570 * 15 14 13 42 42 H 1.09002 * 109.46736 * 59.99773 * 15 14 13 43 43 H 0.96995 * 120.00206 * 179.97438 * 19 18 16 44 44 H 1.09006 * 109.51901 * 176.88414 * 24 10 9 45 45 H 1.08990 * 109.52387 * 297.01010 * 24 10 9 46 46 H 1.08992 * 109.48508 * 62.37139 * 25 24 10 47 47 H 1.09003 * 109.48361 * 182.39880 * 25 24 10 48 48 H 1.07999 * 119.97477 * 179.69958 * 27 6 5 49 49 H 1.07997 * 120.02708 * 180.27063 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0562 2.5168 0.0000 6 6 3.3020 3.6756 -0.0016 7 6 3.9863 5.0184 -0.0016 8 1 5.0111 4.9042 0.3515 9 6 3.9964 5.5862 -1.4233 10 6 4.6392 6.9764 -1.4050 11 1 4.5992 7.4099 -2.4043 12 7 6.0383 6.8653 -0.9714 13 6 6.8383 7.9867 -1.4816 14 6 8.2860 7.8367 -1.0098 15 6 9.1191 9.0051 -1.5407 16 6 10.5451 8.8570 -1.0765 17 1 10.8290 8.0137 -0.4644 18 6 11.4875 9.7982 -1.4332 19 7 11.1419 10.8248 -2.1790 20 14 13.2553 9.6143 -0.8585 21 1 14.0221 8.8298 -1.8592 22 1 13.8690 10.9581 -0.7071 23 1 13.2802 8.9089 0.4481 24 6 3.8693 7.8699 -0.4276 25 6 3.8641 7.2140 0.9556 26 8 3.2814 5.9125 0.8619 27 6 1.9212 3.6048 0.0030 28 6 1.2916 2.3750 -0.0021 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 4.0209 0.3798 0.0017 33 1 5.1346 2.5748 0.0000 34 1 4.5713 4.9277 -2.0744 35 1 2.9737 5.6615 -1.7928 36 1 6.1015 6.8038 0.0338 37 1 6.8091 7.9877 -2.5712 38 1 6.4296 8.9249 -1.1063 39 1 8.3148 7.8359 0.0798 40 1 8.6950 6.8985 -1.3847 41 1 9.0903 9.0063 -2.6303 42 1 8.7099 9.9431 -1.1654 43 1 11.8047 11.4872 -2.4296 44 1 4.3533 8.8447 -0.3667 45 1 2.8443 7.9934 -0.7771 46 1 4.8873 7.1286 1.3213 47 1 3.2813 7.8245 1.6453 48 1 1.3344 4.5114 0.0067 49 1 0.2130 2.3201 -0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168594178.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:59:45 Heat of formation + Delta-G solvation = -93.776973 kcal Electronic energy + Delta-G solvation = -26275.099575 eV Core-core repulsion = 22586.801902 eV Total energy + Delta-G solvation = -3688.297673 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.39535 -40.60662 -38.44471 -37.38685 -35.67027 -33.90821 -33.26986 -32.01632 -31.31413 -30.06421 -28.16042 -27.68492 -25.55194 -24.67092 -24.29424 -23.52299 -22.19072 -21.83984 -20.27949 -19.11656 -18.50930 -17.69115 -17.48356 -16.74868 -16.62568 -16.58261 -16.55311 -15.98744 -15.95078 -15.54238 -15.32785 -15.09294 -14.57971 -14.43665 -14.31501 -14.05965 -13.84285 -13.58675 -13.36240 -13.15375 -12.99994 -12.88314 -12.76141 -12.73319 -12.45431 -12.32232 -12.26587 -11.92069 -11.86223 -11.72039 -11.55575 -11.39807 -11.27933 -11.00860 -10.55251 -10.41028 -9.94383 -9.37217 -9.05658 -8.20160 -6.30949 0.37624 0.42741 1.40089 1.41364 1.52479 2.38968 2.40926 2.64258 2.92627 3.12948 3.18420 3.74667 3.80553 3.87943 3.97076 3.98229 4.07727 4.14594 4.25122 4.26014 4.35386 4.38482 4.40445 4.46152 4.54373 4.56752 4.67874 4.73504 4.75214 4.77205 4.79251 4.89282 4.98692 5.02095 5.05387 5.10865 5.17795 5.20916 5.27175 5.30149 5.40936 5.52500 5.65425 5.75533 5.80394 5.86142 6.05671 6.27189 6.28091 6.43756 6.45453 6.85996 7.38179 8.91582 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.022524 B = 0.002044 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.819592 B =13696.094958 C =14487.153773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.115 3.885 4 C -0.164 4.164 5 C -0.074 4.074 6 C -0.127 4.127 7 C 0.140 3.860 8 H 0.066 0.934 9 C -0.121 4.121 10 C 0.081 3.919 11 H 0.079 0.921 12 N -0.685 5.685 13 C 0.074 3.926 14 C -0.093 4.093 15 C 0.025 3.975 16 C -0.543 4.543 17 H 0.059 0.941 18 C -0.002 4.002 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.273 1.273 22 H -0.281 1.281 23 H -0.263 1.263 24 C -0.181 4.181 25 C 0.061 3.939 26 O -0.385 6.385 27 C -0.060 4.060 28 C -0.212 4.212 29 H 0.064 0.936 30 H 0.118 0.882 31 H 0.063 0.937 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.340 0.660 37 H 0.062 0.938 38 H 0.026 0.974 39 H 0.049 0.951 40 H 0.052 0.948 41 H -0.009 1.009 42 H -0.008 1.008 43 H 0.263 0.737 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.048 0.952 47 H 0.111 0.889 48 H 0.134 0.866 49 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.165 -17.740 5.295 31.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.070 3.930 4 C -0.182 4.182 5 C -0.092 4.092 6 C -0.127 4.127 7 C 0.083 3.917 8 H 0.084 0.916 9 C -0.159 4.159 10 C -0.029 4.029 11 H 0.098 0.902 12 N -0.317 5.317 13 C -0.056 4.056 14 C -0.131 4.131 15 C -0.012 4.012 16 C -0.581 4.581 17 H 0.077 0.923 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.188 1.188 24 C -0.221 4.221 25 C -0.016 4.016 26 O -0.305 6.305 27 C -0.078 4.078 28 C -0.231 4.231 29 H 0.083 0.917 30 H 0.136 0.864 31 H 0.082 0.918 32 H 0.157 0.843 33 H 0.159 0.841 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.160 0.840 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.009 0.991 42 H 0.010 0.990 43 H 0.072 0.928 44 H 0.089 0.911 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.129 0.871 48 H 0.151 0.849 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -25.018 -18.270 4.800 31.348 hybrid contribution 0.797 1.365 0.400 1.630 sum -24.221 -16.905 5.200 29.992 Atomic orbital electron populations 1.23335 0.76524 1.05533 1.02221 1.86043 1.23434 1.26888 1.88666 1.19248 0.92675 0.84677 0.96394 1.20578 0.91801 0.98893 1.06960 1.20975 1.00657 0.90683 0.96850 1.19611 0.94263 0.93599 1.05219 1.20728 0.94428 0.86501 0.90081 0.91591 1.22099 1.01112 0.95884 0.96780 1.21671 0.86885 0.95460 0.98838 0.90244 1.60662 1.09353 1.44671 1.17022 1.21844 0.92912 0.91303 0.99491 1.21379 0.93656 0.98593 0.99465 1.18967 0.94085 0.93433 0.94755 1.21705 0.95529 1.08721 1.32167 0.92289 1.25988 1.03839 0.94880 0.95209 1.70091 1.35890 1.13184 1.38139 0.85450 0.79018 0.77543 0.79057 1.19820 1.20679 1.18769 1.22779 1.02574 0.99668 0.97046 1.22624 0.98701 0.83629 0.96642 1.87900 1.53585 1.22594 1.66408 1.20902 0.93903 0.97565 0.95457 1.21445 1.01064 0.91750 1.08797 0.91747 0.86359 0.91813 0.84264 0.84139 0.90540 0.90285 0.84032 0.91997 0.95625 0.93255 0.92938 0.99061 0.99007 0.92798 0.91095 0.89543 0.93396 0.87136 0.84862 0.83490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.97 10.50 -92.37 -0.97 -6.94 16 3 C 0.12 2.23 6.69 22.51 0.15 2.38 16 4 C -0.16 -3.20 9.99 22.37 0.22 -2.98 16 5 C -0.07 -1.46 9.66 22.25 0.22 -1.24 16 6 C -0.13 -2.62 4.98 -19.85 -0.10 -2.72 16 7 C 0.14 2.95 2.61 29.88 0.08 3.03 16 8 H 0.07 1.48 7.24 -2.39 -0.02 1.47 16 9 C -0.12 -2.48 5.09 30.69 0.16 -2.32 16 10 C 0.08 1.83 2.88 45.03 0.13 1.96 16 11 H 0.08 1.85 7.80 -2.39 -0.02 1.83 16 12 N -0.68 -18.54 5.86 -490.96 -2.88 -21.42 16 13 C 0.07 2.46 5.49 86.30 0.47 2.93 16 14 C -0.09 -3.83 5.41 30.60 0.17 -3.66 16 15 C 0.03 1.34 4.97 29.85 0.15 1.49 16 16 C -0.54 -31.33 9.11 25.60 0.23 -31.09 16 17 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 18 C 0.00 -0.09 5.46 84.66 0.46 0.37 16 19 N -0.93 -57.14 13.29 21.45 0.28 -56.85 16 20 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 22 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 C -0.18 -3.55 5.72 30.68 0.18 -3.38 16 25 C 0.06 1.17 6.58 72.01 0.47 1.64 16 26 O -0.39 -8.38 9.71 -148.98 -1.45 -9.83 16 27 C -0.06 -1.15 9.35 22.26 0.21 -0.94 16 28 C -0.21 -3.66 9.04 22.37 0.20 -3.46 16 29 H 0.06 0.48 7.66 -2.38 -0.02 0.46 16 30 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.48 7.67 -2.39 -0.02 0.46 16 32 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 33 H 0.14 2.43 8.03 -2.91 -0.02 2.41 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 36 H 0.34 8.78 5.83 -89.69 -0.52 8.26 16 37 H 0.06 2.14 8.06 -2.39 -0.02 2.12 16 38 H 0.03 0.85 7.43 -2.39 -0.02 0.83 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 41 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 42 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 43 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 44 H 0.07 1.48 7.43 -2.38 -0.02 1.46 16 45 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.05 0.96 6.43 -2.39 -0.02 0.95 16 47 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 48 H 0.13 2.34 7.76 -2.91 -0.02 2.31 16 49 H 0.15 1.79 6.30 -2.91 -0.02 1.77 16 Total: -1.00 -67.16 388.08 1.93 -65.24 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.40 Total: 19.85 kcal Atomic # 6 Polarization: -41.22 SS G_CDS: 4.51 Total: -36.71 kcal Atomic # 7 Polarization: -75.68 SS G_CDS: -2.59 Total: -78.27 kcal Atomic # 8 Polarization: -14.35 SS G_CDS: -2.42 Total: -16.76 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.16 1.93 -65.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168594178.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.542 kcal (2) G-P(sol) polarization free energy of solvation -67.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds