Wall clock time and date at job start Tue Mar 31 2020 14:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35667 * 117.00162 * 2 1 4 4 C 1.38039 * 120.21254 * 0.02638 * 3 2 1 5 5 C 1.39213 * 119.97911 * 179.97438 * 4 3 2 6 6 N 1.38922 * 119.79828 * 179.97438 * 5 4 3 7 7 C 1.46493 * 120.00359 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47677 * 180.02562 * 7 6 5 9 9 O 1.42902 * 109.47050 * 64.99890 * 8 7 6 10 10 C 1.42899 * 114.00206 * 180.02562 * 9 8 7 11 11 C 1.53009 * 109.46953 * 270.00299 * 10 9 8 12 12 C 1.52992 * 109.46961 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47205 * 59.99926 * 12 11 10 14 14 C 1.52999 * 109.47141 * 299.99845 * 13 12 11 15 15 C 1.52992 * 109.46945 * 59.99995 * 14 13 12 16 16 C 1.39718 * 120.40653 * 359.97438 * 5 4 3 17 17 C 1.36231 * 120.43127 * 359.73703 * 16 5 4 18 18 C 1.40853 * 120.00619 * 0.52330 * 17 16 5 19 19 C 1.40962 * 120.20512 * 179.75782 * 18 17 16 20 20 H 1.08001 * 120.00581 * 154.36423 * 19 18 17 21 21 C 1.39851 * 119.99501 * 334.36958 * 19 18 17 22 22 N 1.30951 * 120.00187 * 334.60173 * 21 19 18 23 23 Si 1.86802 * 119.99995 * 154.60940 * 21 19 18 24 24 H 1.48495 * 109.47236 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.46709 * 299.99677 * 23 21 19 26 26 H 1.48500 * 109.47336 * 59.99502 * 23 21 19 27 27 H 1.09008 * 109.47006 * 59.99434 * 1 2 3 28 28 H 1.08994 * 109.47507 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46988 * 299.99880 * 1 2 3 30 30 H 1.07997 * 120.00727 * 359.95138 * 4 3 2 31 31 H 0.96998 * 119.99824 * 0.02562 * 6 5 4 32 32 H 1.09004 * 109.47428 * 300.00397 * 7 6 5 33 33 H 1.09002 * 109.47035 * 60.00135 * 7 6 5 34 34 H 1.08994 * 109.47452 * 185.00445 * 8 7 6 35 35 H 1.08998 * 109.46830 * 305.00472 * 8 7 6 36 36 H 1.08996 * 109.47279 * 29.99786 * 10 9 8 37 37 H 1.08996 * 109.46709 * 299.99835 * 11 10 9 38 38 H 1.09003 * 109.46632 * 60.00004 * 11 10 9 39 39 H 1.09010 * 109.47292 * 300.00045 * 12 11 10 40 40 H 1.08996 * 109.47076 * 180.02562 * 12 11 10 41 41 H 1.09001 * 109.46997 * 179.97438 * 13 12 11 42 42 H 1.08997 * 109.47038 * 60.00057 * 13 12 11 43 43 H 1.09005 * 109.47316 * 300.00303 * 14 13 12 44 44 H 1.09001 * 109.47271 * 180.02562 * 14 13 12 45 45 H 1.09006 * 109.47099 * 179.97438 * 15 14 13 46 46 H 1.08996 * 109.47292 * 60.00393 * 15 14 13 47 47 H 1.08006 * 119.78493 * 180.02562 * 16 5 4 48 48 H 1.08000 * 119.99903 * 180.25449 * 17 16 5 49 49 H 0.97003 * 119.99943 * 354.19166 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2975 2.3693 0.0005 5 6 1.9346 3.6071 0.0011 6 7 1.1786 4.7726 0.0011 7 6 1.8444 6.0775 0.0022 8 6 0.7913 7.1875 0.0026 9 8 0.0500 7.1403 1.2234 10 6 -0.9655 8.1404 1.3258 11 6 -0.3800 9.3973 1.9728 12 6 -1.4671 10.4683 2.0818 13 6 -2.6179 9.9412 2.9412 14 6 -3.2034 8.6844 2.2943 15 6 -2.1164 7.6134 2.1853 16 6 3.3296 3.6844 0.0016 17 6 4.0836 2.5497 0.0070 18 6 3.4575 1.2880 0.0009 19 6 4.2336 0.1112 0.0013 20 1 3.8253 -0.8049 0.4018 21 6 5.5325 0.1302 -0.5168 22 7 5.8649 1.0198 -1.4184 23 14 6.7932 -1.1138 0.0771 24 1 8.0830 -0.8836 -0.6218 25 1 6.9887 -0.9598 1.5412 26 1 6.3099 -2.4870 -0.2160 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2188 2.3169 0.0002 31 1 0.2100 4.7224 0.0011 32 1 2.4666 6.1673 0.8927 33 1 2.4678 6.1681 -0.8873 34 1 1.2839 8.1557 -0.0862 35 1 0.1139 7.0458 -0.8395 36 1 -1.3375 8.3837 0.3306 37 1 -0.0080 9.1540 2.9680 38 1 0.4396 9.7730 1.3602 39 1 -1.8388 10.7115 1.0864 40 1 -1.0499 11.3639 2.5423 41 1 -3.3922 10.7045 3.0193 42 1 -2.2463 9.6981 3.9366 43 1 -3.5751 8.9276 1.2988 44 1 -4.0236 8.3092 2.9063 45 1 -2.5336 6.7178 1.7248 46 1 -1.7447 7.3702 3.1806 47 1 3.8135 4.6500 0.0024 48 1 5.1614 2.6176 0.0115 49 1 5.1904 1.6105 -1.7886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171477978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:31 Heat of formation + Delta-G solvation = -87.337667 kcal Electronic energy + Delta-G solvation = -26482.724251 eV Core-core repulsion = 22794.705807 eV Total energy + Delta-G solvation = -3688.018444 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.47073 -38.79423 -37.24027 -36.41036 -34.92610 -32.88065 -31.12601 -30.48967 -29.25468 -28.89102 -27.43320 -26.37156 -24.04629 -23.05666 -22.68911 -22.30386 -20.80681 -20.23638 -19.95150 -17.87539 -17.10868 -16.76631 -16.11319 -15.49315 -15.47681 -14.75640 -14.66621 -14.56851 -14.37695 -14.19016 -13.97474 -13.76884 -13.50939 -13.30975 -12.97259 -12.75480 -12.57188 -12.48436 -12.26371 -11.73898 -11.54934 -11.45068 -11.38590 -11.25674 -11.05063 -10.89223 -10.87571 -10.69886 -10.58561 -10.51928 -10.26149 -10.23549 -9.89207 -9.56562 -9.35565 -8.90336 -8.42964 -7.24706 -6.93130 -6.49358 -3.92523 2.87242 2.97235 3.30893 3.42318 3.46586 3.51472 4.22110 4.24109 4.37797 4.41032 4.52552 4.61980 4.76935 4.82187 4.87460 4.99925 5.10552 5.14766 5.15726 5.22178 5.25754 5.34779 5.45360 5.59311 5.64648 5.67267 5.76386 5.76748 5.82818 5.84197 5.87441 5.93176 5.95775 5.99721 6.02191 6.10166 6.12658 6.31631 6.70035 6.92466 7.07006 7.14586 7.29892 7.61102 7.77834 7.97004 8.20449 8.30014 8.48257 8.56220 8.69105 9.10772 9.16700 10.35186 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.002366 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.042096 B =11829.866129 C =12701.786722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.309 6.309 3 C 0.047 3.953 4 C -0.232 4.232 5 C 0.118 3.882 6 N -0.754 5.754 7 C 0.141 3.859 8 C 0.054 3.946 9 O -0.374 6.374 10 C 0.090 3.910 11 C -0.142 4.142 12 C -0.117 4.117 13 C -0.122 4.122 14 C -0.116 4.116 15 C -0.117 4.117 16 C -0.173 4.173 17 C -0.160 4.160 18 C 0.053 3.947 19 C -0.517 4.517 20 H 0.074 0.926 21 C 0.036 3.964 22 N -0.818 5.818 23 Si 1.063 2.937 24 H -0.277 1.277 25 H -0.277 1.277 26 H -0.279 1.279 27 H 0.039 0.961 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.097 0.903 31 H 0.387 0.613 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.064 0.936 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.071 0.929 47 H 0.091 0.909 48 H 0.113 0.887 49 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.317 16.026 4.181 21.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.222 6.222 3 C 0.002 3.998 4 C -0.255 4.255 5 C 0.020 3.980 6 N -0.390 5.390 7 C 0.016 3.984 8 C -0.023 4.023 9 O -0.293 6.293 10 C 0.032 3.968 11 C -0.180 4.180 12 C -0.155 4.155 13 C -0.160 4.160 14 C -0.154 4.154 15 C -0.154 4.154 16 C -0.196 4.196 17 C -0.181 4.181 18 C 0.049 3.951 19 C -0.547 4.547 20 H 0.092 0.908 21 C -0.182 4.182 22 N -0.443 5.443 23 Si 0.888 3.112 24 H -0.202 1.202 25 H -0.203 1.203 26 H -0.205 1.205 27 H 0.058 0.942 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.115 0.885 31 H 0.219 0.781 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.085 0.915 45 H 0.087 0.913 46 H 0.090 0.910 47 H 0.109 0.891 48 H 0.130 0.870 49 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -12.415 15.406 4.140 20.214 hybrid contribution -2.368 0.954 -0.095 2.555 sum -14.783 16.360 4.045 22.417 Atomic orbital electron populations 1.22725 0.81828 1.01675 0.99858 1.85996 1.18137 1.28164 1.89951 1.18912 0.92086 0.82193 1.06641 1.20097 0.97170 0.91500 1.16714 1.16951 0.90294 0.84824 1.05888 1.43749 1.06540 1.01791 1.86879 1.21046 0.93780 0.82581 1.01031 1.22805 0.94234 0.98562 0.86728 1.88023 1.49120 1.53726 1.38438 1.22076 0.88385 0.88012 0.98339 1.22046 0.98275 0.95407 1.02226 1.21495 0.95843 0.97895 1.00227 1.21576 0.97751 0.97285 0.99384 1.21505 0.97600 0.95208 1.01092 1.21578 0.94506 0.98444 1.00906 1.19909 0.91408 0.97466 1.10770 1.20500 0.98701 0.90984 1.07892 1.16986 0.87758 0.93800 0.96516 1.20132 0.99720 0.96989 1.37823 0.90825 1.26823 0.98891 0.99382 0.93140 1.70503 1.39700 1.16103 1.18030 0.83674 0.75432 0.75147 0.76953 1.20240 1.20315 1.20457 0.94245 0.90047 0.94258 0.88535 0.78082 0.92562 0.91978 0.92548 0.93095 0.92541 0.91028 0.91903 0.92056 0.91749 0.91952 0.91754 0.91970 0.91456 0.91294 0.91037 0.89065 0.86955 0.89224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.63 9.81 101.05 0.99 1.62 16 2 O -0.31 -7.45 9.78 -18.70 -0.18 -7.63 16 3 C 0.05 1.20 6.71 -38.42 -0.26 0.95 16 4 C -0.23 -5.31 8.86 -39.29 -0.35 -5.66 16 5 C 0.12 2.61 6.66 -83.73 -0.56 2.05 16 6 N -0.75 -13.42 5.65 -58.54 -0.33 -13.75 16 7 C 0.14 2.10 5.27 -4.05 -0.02 2.08 16 8 C 0.05 0.63 5.88 37.16 0.22 0.85 16 9 O -0.37 -4.79 9.93 -35.23 -0.35 -5.14 16 10 C 0.09 0.88 2.61 -26.73 -0.07 0.81 16 11 C -0.14 -1.23 5.54 -26.73 -0.15 -1.38 16 12 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 13 C -0.12 -0.81 5.92 -26.73 -0.16 -0.97 16 14 C -0.12 -0.83 5.92 -26.74 -0.16 -0.98 16 15 C -0.12 -1.07 5.57 -26.74 -0.15 -1.22 16 16 C -0.17 -4.07 9.22 -39.75 -0.37 -4.43 16 17 C -0.16 -4.22 7.88 -39.32 -0.31 -4.53 16 18 C 0.05 1.48 5.31 -106.64 -0.57 0.91 16 19 C -0.52 -14.68 8.63 -37.95 -0.33 -15.01 16 20 H 0.07 2.11 7.71 -52.49 -0.40 1.71 16 21 C 0.04 0.97 4.93 -17.32 -0.09 0.89 16 22 N -0.82 -22.79 12.32 55.54 0.68 -22.11 16 23 Si 1.06 23.11 30.00 -169.99 -5.10 18.01 16 24 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 25 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 26 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 27 H 0.04 0.66 7.66 -51.92 -0.40 0.26 16 28 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 29 H 0.04 0.65 7.66 -51.93 -0.40 0.25 16 30 H 0.10 1.96 6.29 -52.49 -0.33 1.63 16 31 H 0.39 6.37 8.47 -40.82 -0.35 6.02 16 32 H 0.06 0.90 7.92 -51.93 -0.41 0.49 16 33 H 0.06 0.91 7.92 -51.93 -0.41 0.50 16 34 H 0.06 0.55 7.87 -51.93 -0.41 0.15 16 35 H 0.05 0.56 8.08 -51.93 -0.42 0.14 16 36 H 0.06 0.51 7.79 -51.93 -0.40 0.11 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.54 7.87 -51.93 -0.41 0.13 16 39 H 0.06 0.40 8.14 -51.92 -0.42 -0.02 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 47 H 0.09 1.93 6.67 -52.48 -0.35 1.58 16 48 H 0.11 3.04 6.48 -52.49 -0.34 2.70 16 49 H 0.29 8.41 6.69 -40.82 -0.27 8.13 16 LS Contribution 386.19 15.07 5.82 5.82 Total: -1.00 -30.61 386.19 -10.26 -40.87 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -8.33 Total: 8.92 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: -2.47 Total: -24.99 kcal Atomic # 7 Polarization: -36.21 SS G_CDS: 0.35 Total: -35.85 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.53 Total: -12.77 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.10 Total: 18.01 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -30.61 -10.26 -40.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171477978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.468 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds