Wall clock time and date at job start Tue Mar 31 2020 14:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35667 * 117.00162 * 2 1 4 4 C 1.38039 * 120.21254 * 0.02638 * 3 2 1 5 5 C 1.39213 * 119.97911 * 179.97438 * 4 3 2 6 6 N 1.38922 * 119.79828 * 179.97438 * 5 4 3 7 7 C 1.46493 * 120.00359 * 179.97438 * 6 5 4 8 8 C 1.52999 * 109.47677 * 180.02562 * 7 6 5 9 9 O 1.42902 * 109.47050 * 64.99890 * 8 7 6 10 10 C 1.42899 * 114.00206 * 180.02562 * 9 8 7 11 11 C 1.53009 * 109.46953 * 270.00299 * 10 9 8 12 12 C 1.52992 * 109.46961 * 179.97438 * 11 10 9 13 13 C 1.53001 * 109.47205 * 59.99926 * 12 11 10 14 14 C 1.52999 * 109.47141 * 299.99845 * 13 12 11 15 15 C 1.52992 * 109.46945 * 59.99995 * 14 13 12 16 16 C 1.39718 * 120.40653 * 359.97438 * 5 4 3 17 17 C 1.36231 * 120.43127 * 359.73703 * 16 5 4 18 18 C 1.40853 * 120.00619 * 0.52330 * 17 16 5 19 19 C 1.40962 * 120.20512 * 179.75782 * 18 17 16 20 20 H 1.08001 * 120.00581 * 154.36423 * 19 18 17 21 21 C 1.39851 * 119.99501 * 334.36958 * 19 18 17 22 22 N 1.30951 * 120.00187 * 334.60173 * 21 19 18 23 23 Si 1.86802 * 119.99995 * 154.60940 * 21 19 18 24 24 H 1.48495 * 109.47236 * 179.97438 * 23 21 19 25 25 H 1.48503 * 109.46709 * 299.99677 * 23 21 19 26 26 H 1.48500 * 109.47336 * 59.99502 * 23 21 19 27 27 H 1.09008 * 109.47006 * 59.99434 * 1 2 3 28 28 H 1.08994 * 109.47507 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46988 * 299.99880 * 1 2 3 30 30 H 1.07997 * 120.00727 * 359.95138 * 4 3 2 31 31 H 0.96998 * 119.99824 * 0.02562 * 6 5 4 32 32 H 1.09004 * 109.47428 * 300.00397 * 7 6 5 33 33 H 1.09002 * 109.47035 * 60.00135 * 7 6 5 34 34 H 1.08994 * 109.47452 * 185.00445 * 8 7 6 35 35 H 1.08998 * 109.46830 * 305.00472 * 8 7 6 36 36 H 1.08996 * 109.47279 * 29.99786 * 10 9 8 37 37 H 1.08996 * 109.46709 * 299.99835 * 11 10 9 38 38 H 1.09003 * 109.46632 * 60.00004 * 11 10 9 39 39 H 1.09010 * 109.47292 * 300.00045 * 12 11 10 40 40 H 1.08996 * 109.47076 * 180.02562 * 12 11 10 41 41 H 1.09001 * 109.46997 * 179.97438 * 13 12 11 42 42 H 1.08997 * 109.47038 * 60.00057 * 13 12 11 43 43 H 1.09005 * 109.47316 * 300.00303 * 14 13 12 44 44 H 1.09001 * 109.47271 * 180.02562 * 14 13 12 45 45 H 1.09006 * 109.47099 * 179.97438 * 15 14 13 46 46 H 1.08996 * 109.47292 * 60.00393 * 15 14 13 47 47 H 1.08006 * 119.78493 * 180.02562 * 16 5 4 48 48 H 1.08000 * 119.99903 * 180.25449 * 17 16 5 49 49 H 0.97003 * 119.99943 * 354.19166 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2088 0.0000 4 6 1.2975 2.3693 0.0005 5 6 1.9346 3.6071 0.0011 6 7 1.1786 4.7726 0.0011 7 6 1.8444 6.0775 0.0022 8 6 0.7913 7.1875 0.0026 9 8 0.0500 7.1403 1.2234 10 6 -0.9655 8.1404 1.3258 11 6 -0.3800 9.3973 1.9728 12 6 -1.4671 10.4683 2.0818 13 6 -2.6179 9.9412 2.9412 14 6 -3.2034 8.6844 2.2943 15 6 -2.1164 7.6134 2.1853 16 6 3.3296 3.6844 0.0016 17 6 4.0836 2.5497 0.0070 18 6 3.4575 1.2880 0.0009 19 6 4.2336 0.1112 0.0013 20 1 3.8253 -0.8049 0.4018 21 6 5.5325 0.1302 -0.5168 22 7 5.8649 1.0198 -1.4184 23 14 6.7932 -1.1138 0.0771 24 1 8.0830 -0.8836 -0.6218 25 1 6.9887 -0.9598 1.5412 26 1 6.3099 -2.4870 -0.2160 27 1 -0.3633 0.5140 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2188 2.3169 0.0002 31 1 0.2100 4.7224 0.0011 32 1 2.4666 6.1673 0.8927 33 1 2.4678 6.1681 -0.8873 34 1 1.2839 8.1557 -0.0862 35 1 0.1139 7.0458 -0.8395 36 1 -1.3375 8.3837 0.3306 37 1 -0.0080 9.1540 2.9680 38 1 0.4396 9.7730 1.3602 39 1 -1.8388 10.7115 1.0864 40 1 -1.0499 11.3639 2.5423 41 1 -3.3922 10.7045 3.0193 42 1 -2.2463 9.6981 3.9366 43 1 -3.5751 8.9276 1.2988 44 1 -4.0236 8.3092 2.9063 45 1 -2.5336 6.7178 1.7248 46 1 -1.7447 7.3702 3.1806 47 1 3.8135 4.6500 0.0024 48 1 5.1614 2.6176 0.0115 49 1 5.1904 1.6105 -1.7886 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171477978.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:30 Heat of formation + Delta-G solvation = -104.697239 kcal Electronic energy + Delta-G solvation = -26483.477019 eV Core-core repulsion = 22794.705807 eV Total energy + Delta-G solvation = -3688.771212 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.68420 -40.19034 -38.64545 -37.64188 -36.58725 -34.58491 -31.84376 -31.66133 -30.78932 -30.37568 -28.86357 -27.97841 -25.90430 -24.10438 -23.47211 -23.09612 -22.66005 -21.79023 -20.73701 -19.84067 -18.54150 -17.89142 -17.53376 -16.62115 -16.51414 -16.33750 -16.30452 -15.91838 -15.52287 -15.43548 -15.18822 -14.98715 -14.67683 -14.59609 -14.33069 -14.11295 -13.92117 -13.46878 -13.32033 -13.15051 -12.98364 -12.86015 -12.61902 -12.44347 -12.24688 -12.07918 -11.95009 -11.92676 -11.86539 -11.75968 -11.49409 -11.38256 -11.28207 -11.23526 -10.80628 -10.35776 -10.30288 -9.18326 -8.92607 -8.32908 -5.97955 0.92537 1.06785 1.53350 1.68597 1.83179 2.43671 2.59876 2.73688 2.80600 2.91684 3.61327 3.72450 3.78320 3.97575 4.06102 4.17385 4.23106 4.26737 4.27908 4.34108 4.40274 4.42488 4.43173 4.48369 4.54366 4.56103 4.64545 4.68240 4.70732 4.83031 4.84393 4.94756 5.06304 5.09571 5.10448 5.18816 5.20115 5.22291 5.28777 5.36814 5.41227 5.48626 5.62106 5.81413 5.94979 6.21293 6.26703 6.31435 6.62574 6.74811 7.07170 7.10601 7.26846 8.26298 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.021683 B = 0.002366 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.042096 B =11829.866129 C =12701.786722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C 0.044 3.956 4 C -0.242 4.242 5 C 0.146 3.854 6 N -0.742 5.742 7 C 0.135 3.865 8 C 0.061 3.939 9 O -0.400 6.400 10 C 0.086 3.914 11 C -0.140 4.140 12 C -0.114 4.114 13 C -0.123 4.123 14 C -0.113 4.113 15 C -0.117 4.117 16 C -0.190 4.190 17 C -0.164 4.164 18 C 0.006 3.994 19 C -0.554 4.554 20 H 0.056 0.944 21 C -0.003 4.003 22 N -0.840 5.840 23 Si 1.114 2.886 24 H -0.271 1.271 25 H -0.267 1.267 26 H -0.265 1.265 27 H 0.051 0.949 28 H 0.112 0.888 29 H 0.052 0.948 30 H 0.127 0.873 31 H 0.397 0.603 32 H 0.046 0.954 33 H 0.070 0.930 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.069 0.931 37 H 0.056 0.944 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.112 0.888 48 H 0.094 0.906 49 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.441 17.833 4.297 24.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.252 6.252 3 C -0.002 4.002 4 C -0.265 4.265 5 C 0.045 3.955 6 N -0.377 5.377 7 C 0.010 3.990 8 C -0.015 4.015 9 O -0.320 6.320 10 C 0.029 3.971 11 C -0.178 4.178 12 C -0.152 4.152 13 C -0.160 4.160 14 C -0.150 4.150 15 C -0.155 4.155 16 C -0.213 4.213 17 C -0.184 4.184 18 C 0.002 3.998 19 C -0.585 4.585 20 H 0.074 0.926 21 C -0.215 4.215 22 N -0.467 5.467 23 Si 0.933 3.067 24 H -0.196 1.196 25 H -0.192 1.192 26 H -0.189 1.189 27 H 0.070 0.930 28 H 0.130 0.870 29 H 0.071 0.929 30 H 0.145 0.855 31 H 0.231 0.769 32 H 0.064 0.936 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.130 0.870 48 H 0.112 0.888 49 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.600 17.259 4.259 23.004 hybrid contribution -1.996 0.567 -0.092 2.077 sum -16.596 17.826 4.167 24.709 Atomic orbital electron populations 1.23094 0.78495 1.04246 1.00981 1.85946 1.21645 1.27846 1.89791 1.19121 0.91914 0.83677 1.05469 1.20365 0.98631 0.90828 1.16632 1.17130 0.90171 0.86232 1.01958 1.43867 1.07009 1.01642 1.85181 1.21247 0.94894 0.82038 1.00830 1.22731 0.93774 0.98107 0.86909 1.87986 1.50002 1.55047 1.38927 1.22246 0.87902 0.87782 0.99161 1.22023 0.98949 0.95504 1.01291 1.21492 0.95325 0.97473 1.00871 1.21588 0.98049 0.97436 0.98930 1.21493 0.97004 0.94698 1.01805 1.21594 0.94967 0.99031 0.99881 1.20074 0.92210 0.97474 1.11513 1.20447 0.98115 0.91756 1.08099 1.17328 0.89374 0.94238 0.98837 1.20175 1.01300 0.96832 1.40190 0.92599 1.28191 1.00555 1.00483 0.92226 1.70624 1.38917 1.17531 1.19587 0.83043 0.73262 0.73467 0.76968 1.19552 1.19208 1.18931 0.93021 0.86995 0.92923 0.85522 0.76880 0.93607 0.91248 0.90230 0.91768 0.91333 0.92474 0.91687 0.91176 0.90999 0.90533 0.92406 0.91111 0.90803 0.91921 0.92504 0.86996 0.88819 0.91081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.90 9.81 113.37 1.11 2.01 16 2 O -0.34 -16.40 9.78 -89.84 -0.88 -17.28 16 3 C 0.04 2.28 6.71 23.02 0.15 2.43 16 4 C -0.24 -10.76 8.86 22.46 0.20 -10.57 16 5 C 0.15 6.25 6.66 38.61 0.26 6.50 16 6 N -0.74 -24.63 5.65 -339.12 -1.92 -26.54 16 7 C 0.13 3.69 5.27 86.38 0.46 4.15 16 8 C 0.06 1.25 5.88 71.98 0.42 1.68 16 9 O -0.40 -9.36 9.93 -148.98 -1.48 -10.84 16 10 C 0.09 1.51 2.61 30.60 0.08 1.59 16 11 C -0.14 -2.16 5.54 30.59 0.17 -1.99 16 12 C -0.11 -1.29 5.92 30.59 0.18 -1.11 16 13 C -0.12 -1.34 5.92 30.59 0.18 -1.16 16 14 C -0.11 -1.34 5.92 30.59 0.18 -1.15 16 15 C -0.12 -1.96 5.57 30.59 0.17 -1.79 16 16 C -0.19 -8.94 9.22 22.16 0.20 -8.73 16 17 C -0.16 -8.94 7.88 22.44 0.18 -8.77 16 18 C 0.01 0.33 5.31 -21.17 -0.11 0.22 16 19 C -0.55 -33.09 8.63 23.33 0.20 -32.89 16 20 H 0.06 3.39 7.71 -2.91 -0.02 3.37 16 21 C 0.00 -0.14 4.93 85.21 0.42 0.28 16 22 N -0.84 -48.98 12.32 21.82 0.27 -48.71 16 23 Si 1.11 47.92 30.00 68.60 2.06 49.98 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 25 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 26 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 27 H 0.05 1.60 7.66 -2.38 -0.02 1.58 16 28 H 0.11 3.03 8.14 -2.39 -0.02 3.01 16 29 H 0.05 1.62 7.66 -2.39 -0.02 1.60 16 30 H 0.13 4.79 6.29 -2.91 -0.02 4.77 16 31 H 0.40 11.85 8.47 -92.71 -0.79 11.06 16 32 H 0.05 1.39 7.92 -2.38 -0.02 1.37 16 33 H 0.07 1.86 7.92 -2.39 -0.02 1.84 16 34 H 0.08 1.29 7.87 -2.39 -0.02 1.27 16 35 H 0.06 1.16 8.08 -2.39 -0.02 1.14 16 36 H 0.07 1.04 7.79 -2.39 -0.02 1.02 16 37 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.06 0.96 7.87 -2.39 -0.02 0.94 16 39 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 44 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 45 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.11 4.69 6.67 -2.91 -0.02 4.67 16 48 H 0.09 5.36 6.48 -2.91 -0.02 5.34 16 49 H 0.28 16.76 6.69 -92.71 -0.62 16.14 16 Total: -1.00 -69.65 386.19 2.80 -66.85 By element: Atomic # 1 Polarization: 35.55 SS G_CDS: 0.29 Total: 35.84 kcal Atomic # 6 Polarization: -53.76 SS G_CDS: 4.46 Total: -49.30 kcal Atomic # 7 Polarization: -73.60 SS G_CDS: -1.65 Total: -75.25 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: -2.36 Total: -28.12 kcal Atomic # 14 Polarization: 47.92 SS G_CDS: 2.06 Total: 49.98 kcal Total: -69.65 2.80 -66.85 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171477978.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.848 kcal (2) G-P(sol) polarization free energy of solvation -69.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds