Wall clock time and date at job start Tue Mar 31 2020 13:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47199 * 2 1 4 4 C 1.34229 * 116.99835 * 180.02562 * 3 2 1 5 5 O 1.20828 * 120.00549 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.00002 * 179.97438 * 4 3 2 7 7 C 1.53000 * 109.47303 * 179.97438 * 6 4 3 8 8 H 1.08995 * 109.46849 * 54.99851 * 7 6 4 9 9 N 1.46902 * 109.46858 * 294.99890 * 7 6 4 10 10 C 1.46906 * 110.99573 * 155.00031 * 9 7 6 11 11 H 1.08999 * 109.47107 * 35.00181 * 10 9 7 12 12 C 1.53001 * 109.46839 * 275.00202 * 10 9 7 13 13 C 1.52999 * 109.46945 * 155.00126 * 10 9 7 14 14 C 1.53002 * 109.46953 * 294.99845 * 13 10 9 15 15 C 1.50696 * 109.47060 * 179.97438 * 14 13 10 16 16 H 1.08004 * 119.99783 * 359.97438 * 15 14 13 17 17 C 1.37880 * 120.00307 * 180.02562 * 15 14 13 18 18 N 1.31512 * 119.99720 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00212 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47049 * 59.99570 * 19 17 15 21 21 H 1.48499 * 109.47006 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46675 * 299.99662 * 19 17 15 23 23 C 1.50696 * 109.46780 * 175.00054 * 7 6 4 24 24 C 1.38235 * 119.99892 * 79.73132 * 23 7 6 25 25 C 1.38243 * 119.99580 * 179.78625 * 24 23 7 26 26 C 1.38232 * 120.00197 * 0.43513 * 25 24 23 27 27 C 1.38236 * 119.99749 * 359.81829 * 26 25 24 28 28 C 1.38231 * 120.00459 * 359.97007 * 27 26 25 29 29 H 1.09007 * 109.46758 * 300.00251 * 1 2 3 30 30 H 1.08992 * 109.47341 * 60.00030 * 1 2 3 31 31 H 1.09002 * 109.46984 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47105 * 239.99802 * 2 1 3 33 33 H 1.09004 * 109.47167 * 119.99663 * 2 1 3 34 34 H 1.08997 * 109.46667 * 59.99501 * 6 4 3 35 35 H 1.08999 * 109.47040 * 299.99876 * 6 4 3 36 36 H 1.00896 * 111.00219 * 278.95671 * 9 7 6 37 37 H 1.08996 * 109.47627 * 60.00284 * 12 10 9 38 38 H 1.09002 * 109.46966 * 180.02562 * 12 10 9 39 39 H 1.09008 * 109.46883 * 299.99445 * 12 10 9 40 40 H 1.09002 * 109.47133 * 54.99944 * 13 10 9 41 41 H 1.08998 * 109.47172 * 174.99749 * 13 10 9 42 42 H 1.09002 * 109.47282 * 300.00007 * 14 13 10 43 43 H 1.08997 * 109.46989 * 60.00434 * 14 13 10 44 44 H 0.97000 * 120.00317 * 180.02562 * 18 17 15 45 45 H 1.07996 * 120.00161 * 359.97438 * 24 23 7 46 46 H 1.08004 * 119.99813 * 180.27295 * 25 24 23 47 47 H 1.07998 * 120.00020 * 179.83511 * 26 25 24 48 48 H 1.08004 * 120.00130 * 180.02562 * 27 26 25 49 49 H 1.07993 * 120.00446 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 5.4487 2.8573 -0.0010 8 1 5.7807 2.2493 -0.8425 9 7 5.9070 2.2477 1.2545 10 6 7.2232 1.6179 1.0842 11 1 7.8186 2.2041 0.3843 12 6 7.0433 0.2001 0.5380 13 6 7.9380 1.5570 2.4356 14 6 8.2292 2.9778 2.9231 15 6 8.9327 2.9178 4.2544 16 1 9.1500 1.9619 4.7077 17 6 9.2980 4.0832 4.8943 18 7 9.0329 5.2472 4.3425 19 14 10.1707 4.0088 6.5442 20 1 11.4477 3.2656 6.3957 21 1 10.4531 5.3877 7.0174 22 1 9.3054 3.3139 7.5309 23 6 6.0244 4.2444 -0.1255 24 6 6.0965 5.0649 0.9847 25 6 6.6286 6.3358 0.8714 26 6 7.0803 6.7893 -0.3538 27 6 7.0034 5.9706 -1.4650 28 6 6.4753 4.6983 -1.3509 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.5851 3.4698 0.8888 35 1 3.5846 3.4693 -0.8912 36 1 5.9247 2.9266 2.0007 37 1 6.5340 0.2435 -0.4247 38 1 8.0198 -0.2673 0.4121 39 1 6.4478 -0.3861 1.2380 40 1 7.3028 1.0473 3.1600 41 1 8.8751 1.0111 2.3266 42 1 8.8644 3.4874 2.1986 43 1 7.2920 3.5236 3.0321 44 1 9.2902 6.0671 4.7924 45 1 5.7399 4.7121 1.9410 46 1 6.6890 6.9753 1.7396 47 1 7.4936 7.7831 -0.4428 48 1 7.3567 6.3247 -2.4222 49 1 6.4156 4.0585 -2.2189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172482965.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:41:24 Heat of formation + Delta-G solvation = -80.670507 kcal Electronic energy + Delta-G solvation = -27694.294341 eV Core-core repulsion = 24006.565007 eV Total energy + Delta-G solvation = -3687.729334 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.40136 -39.31171 -37.11891 -36.25528 -34.04974 -32.62255 -31.83973 -30.63217 -29.81999 -29.50449 -28.34838 -25.13861 -24.26825 -22.99062 -22.32783 -21.45293 -21.00304 -19.84706 -19.40987 -17.69641 -16.85542 -16.63507 -16.17234 -16.06750 -15.50227 -14.84802 -14.51235 -14.44261 -14.29208 -14.13861 -13.50713 -13.16519 -13.08131 -13.00064 -12.80205 -12.55823 -12.41276 -12.36163 -11.96280 -11.80981 -11.67852 -11.63115 -11.35443 -11.17705 -11.00755 -10.90797 -10.79260 -10.58292 -10.49884 -10.45218 -10.18203 -10.12253 -9.70203 -9.21885 -8.96866 -8.57175 -8.48660 -8.31532 -7.90661 -5.97519 -3.98736 1.60746 1.73613 2.50086 2.77832 3.34432 3.38347 3.41715 4.09002 4.47980 4.49822 4.71696 4.79917 4.87866 4.99354 5.13282 5.15166 5.22589 5.32569 5.33340 5.38381 5.46182 5.55173 5.62159 5.65766 5.72305 5.77679 5.81078 5.84853 5.95119 6.01754 6.13076 6.27055 6.32789 6.37989 6.56506 6.58796 6.60062 6.74480 6.78211 6.85167 6.90672 7.04348 7.16711 7.30841 7.57753 7.67703 7.87204 7.95544 8.03109 8.03388 8.47054 9.07115 9.64653 11.12936 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.010652 B = 0.003944 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2627.931311 B = 7097.449660 C = 8578.599523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.463 3.537 5 O -0.479 6.479 6 C -0.096 4.096 7 C 0.140 3.860 8 H 0.090 0.910 9 N -0.670 5.670 10 C 0.090 3.910 11 H 0.036 0.964 12 C -0.127 4.127 13 C -0.116 4.116 14 C 0.026 3.974 15 C -0.519 4.519 16 H 0.053 0.947 17 C 0.059 3.941 18 N -0.892 5.892 19 Si 0.889 3.111 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.116 4.116 24 C -0.094 4.094 25 C -0.097 4.097 26 C -0.122 4.122 27 C -0.125 4.125 28 C -0.117 4.117 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.102 0.898 36 H 0.349 0.651 37 H 0.048 0.952 38 H 0.041 0.959 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.011 0.989 43 H 0.015 0.985 44 H 0.259 0.741 45 H 0.124 0.876 46 H 0.125 0.875 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.952 -2.637 -13.119 19.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.011 4.011 3 O -0.287 6.287 4 C 0.304 3.696 5 O -0.364 6.364 6 C -0.135 4.135 7 C 0.029 3.971 8 H 0.108 0.892 9 N -0.304 5.304 10 C -0.020 4.020 11 H 0.055 0.945 12 C -0.185 4.185 13 C -0.154 4.154 14 C -0.011 4.011 15 C -0.558 4.558 16 H 0.071 0.929 17 C -0.142 4.142 18 N -0.531 5.531 19 Si 0.717 3.283 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.203 1.203 23 C -0.118 4.118 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.140 4.140 27 C -0.143 4.143 28 C -0.135 4.135 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.120 0.880 36 H 0.172 0.828 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.030 0.970 43 H 0.033 0.967 44 H 0.068 0.932 45 H 0.142 0.858 46 H 0.143 0.857 47 H 0.135 0.865 48 H 0.134 0.866 49 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -14.064 -3.387 -13.155 19.553 hybrid contribution 1.258 0.766 0.991 1.775 sum -12.806 -2.620 -12.165 17.856 Atomic orbital electron populations 1.21796 0.93076 1.02682 1.03340 1.22910 0.94939 0.80779 1.02428 1.86497 1.25471 1.31897 1.84839 1.23552 0.80023 0.92969 0.73023 1.90686 1.59813 1.42644 1.43238 1.21423 0.95548 0.91118 1.05385 1.20299 0.91310 0.89944 0.95539 0.89216 1.60778 1.28804 1.35725 1.05119 1.21520 0.87982 0.94465 0.97991 0.94550 1.21706 0.99605 0.96355 1.00813 1.21843 0.98410 1.01163 0.93974 1.19091 0.96242 0.90113 0.95652 1.21223 1.37617 0.92263 1.04658 0.92915 1.24980 0.96040 0.95607 0.97580 1.69948 1.47479 0.97091 1.38601 0.86717 0.80234 0.76871 0.84514 1.20384 1.21389 1.20309 1.20556 1.00547 0.96687 0.94004 1.20986 0.98618 0.93743 0.97897 1.21165 0.96824 0.96212 0.97336 1.21129 1.00071 0.99732 0.93101 1.21030 1.00418 0.94453 0.98429 1.20919 0.99848 0.96045 0.96724 0.91533 0.91708 0.90533 0.91628 0.91284 0.87702 0.88004 0.82750 0.93259 0.93955 0.92535 0.92676 0.92912 0.97028 0.96717 0.93167 0.85834 0.85746 0.86545 0.86647 0.86659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.29 37.16 0.38 -0.72 16 2 C 0.06 0.64 6.19 37.16 0.23 0.87 16 3 O -0.37 -4.53 10.22 -39.25 -0.40 -4.94 16 4 C 0.46 6.29 7.82 36.01 0.28 6.57 16 5 O -0.48 -7.71 13.67 -18.75 -0.26 -7.97 16 6 C -0.10 -1.17 5.47 -27.88 -0.15 -1.32 16 7 C 0.14 2.01 1.60 -68.87 -0.11 1.90 16 8 H 0.09 1.32 6.79 -51.93 -0.35 0.97 16 9 N -0.67 -11.39 5.19 -100.95 -0.52 -11.91 16 10 C 0.09 1.65 2.46 -67.71 -0.17 1.48 16 11 H 0.04 0.71 7.64 -51.93 -0.40 0.31 16 12 C -0.13 -2.13 8.69 37.16 0.32 -1.81 16 13 C -0.12 -2.48 4.74 -26.73 -0.13 -2.61 16 14 C 0.03 0.66 4.80 -27.88 -0.13 0.53 16 15 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 16 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 17 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 18 N -0.89 -25.97 13.29 55.43 0.74 -25.23 16 19 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 20 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 C -0.12 -1.72 4.61 -104.62 -0.48 -2.21 16 24 C -0.09 -1.55 8.90 -39.58 -0.35 -1.90 16 25 C -0.10 -1.58 10.05 -39.58 -0.40 -1.98 16 26 C -0.12 -1.76 10.05 -39.58 -0.40 -2.16 16 27 C -0.13 -1.67 10.05 -39.58 -0.40 -2.07 16 28 C -0.12 -1.59 9.67 -39.58 -0.38 -1.97 16 29 H 0.07 0.49 8.14 -51.92 -0.42 0.07 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.07 0.65 8.13 -51.93 -0.42 0.22 16 33 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.35 6.43 4.16 -39.29 -0.16 6.27 16 37 H 0.05 0.81 6.73 -51.93 -0.35 0.46 16 38 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 1.00 8.14 -51.92 -0.42 0.57 16 40 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.01 0.38 5.75 -51.93 -0.30 0.08 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.12 2.12 6.07 -52.49 -0.32 1.80 16 46 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 47 H 0.12 1.44 8.06 -52.49 -0.42 1.01 16 48 H 0.12 1.25 8.06 -52.48 -0.42 0.82 16 49 H 0.12 1.33 8.04 -52.49 -0.42 0.91 16 LS Contribution 396.24 15.07 5.97 5.97 Total: -1.00 -31.06 396.24 -9.97 -41.04 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -8.18 Total: 7.15 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: -2.29 Total: -20.82 kcal Atomic # 7 Polarization: -37.36 SS G_CDS: 0.21 Total: -37.14 kcal Atomic # 8 Polarization: -12.24 SS G_CDS: -0.66 Total: -12.90 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.06 -9.97 -41.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172482965.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.635 kcal (2) G-P(sol) polarization free energy of solvation -31.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds