Wall clock time and date at job start Tue Mar 31 2020 13:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.45198 * 109.47262 * 2 1 4 4 C 1.34227 * 117.00166 * 179.97438 * 3 2 1 5 5 O 1.20828 * 120.00317 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00041 * 180.02562 * 4 3 2 7 7 N 1.46905 * 109.46897 * 179.55352 * 6 4 3 8 8 C 1.46905 * 110.99372 * 195.81282 * 7 6 4 9 9 C 1.50695 * 109.47341 * 76.02163 * 8 7 6 10 10 C 1.38232 * 119.99911 * 264.38816 * 9 8 7 11 11 C 1.38244 * 119.99951 * 179.76322 * 10 9 8 12 12 C 1.38236 * 119.99687 * 0.50762 * 11 10 9 13 13 C 1.38226 * 119.99976 * 359.74964 * 12 11 10 14 14 C 1.38234 * 120.00583 * 359.97438 * 13 12 11 15 15 C 1.46897 * 111.00070 * 71.86304 * 7 6 4 16 16 H 1.08996 * 109.46862 * 309.99461 * 15 7 6 17 17 C 1.52992 * 109.47582 * 69.99755 * 15 7 6 18 18 C 1.52999 * 109.46790 * 189.99769 * 15 7 6 19 19 C 1.53000 * 109.47302 * 64.99638 * 18 15 7 20 20 C 1.50696 * 109.47440 * 179.97438 * 19 18 15 21 21 H 1.08002 * 119.99835 * 359.97438 * 20 19 18 22 22 C 1.37879 * 120.00076 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00133 * 359.97438 * 22 20 19 24 24 Si 1.86805 * 119.99725 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47550 * 359.97438 * 24 22 20 26 26 H 1.48508 * 109.47101 * 119.99799 * 24 22 20 27 27 H 1.48499 * 109.47328 * 239.99396 * 24 22 20 28 28 H 1.08998 * 109.47766 * 59.99892 * 1 2 3 29 29 H 1.09007 * 109.47022 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47174 * 299.99242 * 1 2 3 31 31 H 1.09001 * 109.47140 * 240.00242 * 2 1 3 32 32 H 1.09004 * 109.47443 * 120.00740 * 2 1 3 33 33 H 1.08995 * 109.47410 * 59.55280 * 6 4 3 34 34 H 1.09000 * 109.47000 * 299.55130 * 6 4 3 35 35 H 1.09009 * 109.46952 * 196.01920 * 8 7 6 36 36 H 1.09003 * 109.47344 * 316.01526 * 8 7 6 37 37 H 1.08005 * 120.00002 * 359.97438 * 10 9 8 38 38 H 1.07999 * 119.99544 * 180.23219 * 11 10 9 39 39 H 1.08005 * 119.99717 * 179.71994 * 12 11 10 40 40 H 1.08002 * 119.99848 * 179.97438 * 13 12 11 41 41 H 1.08002 * 120.00155 * 179.97438 * 14 13 12 42 42 H 1.08996 * 109.47262 * 59.99951 * 17 15 7 43 43 H 1.08996 * 109.47169 * 179.97438 * 17 15 7 44 44 H 1.08998 * 109.47328 * 300.00189 * 17 15 7 45 45 H 1.09002 * 109.47407 * 184.99240 * 18 15 7 46 46 H 1.08998 * 109.47500 * 304.99754 * 18 15 7 47 47 H 1.08997 * 109.47435 * 300.00153 * 19 18 15 48 48 H 1.09008 * 109.47338 * 60.00135 * 19 18 15 49 49 H 0.97001 * 119.99610 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 7 5.3876 2.8604 0.0125 8 6 5.9795 4.1517 0.3872 9 6 5.8382 4.3567 1.8735 10 6 4.7757 5.0866 2.3725 11 6 4.6433 5.2705 3.7363 12 6 5.5793 4.7333 4.6001 13 6 6.6447 4.0080 4.1007 14 6 6.7740 3.8192 2.7374 15 6 5.9009 2.4031 -1.2857 16 1 5.3688 1.5016 -1.5895 17 6 5.6882 3.4981 -2.3328 18 6 7.3950 2.0969 -1.1642 19 6 7.5982 0.9180 -0.2104 20 6 9.0697 0.6161 -0.0912 21 1 9.7882 1.2058 -0.6411 22 6 9.4988 -0.4137 0.7191 23 7 8.6239 -1.1321 1.3883 24 14 11.3231 -0.7874 0.8673 25 1 12.0927 0.1588 0.0203 26 1 11.7450 -0.6404 2.2836 27 1 11.5818 -2.1782 0.4158 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5140 0.8899 33 1 3.5780 3.4719 0.8871 34 1 3.5915 3.4671 -0.8928 35 1 7.0359 4.1589 0.1183 36 1 5.4647 4.9543 -0.1409 37 1 4.0470 5.5103 1.6972 38 1 3.8111 5.8376 4.1264 39 1 5.4784 4.8808 5.6653 40 1 7.3762 3.5886 4.7756 41 1 7.6067 3.2528 2.3472 42 1 6.2202 4.3995 -2.0290 43 1 6.0694 3.1588 -3.2959 44 1 4.6237 3.7162 -2.4194 45 1 7.7949 1.8430 -2.1459 46 1 7.9149 2.9725 -0.7754 47 1 7.1983 1.1717 0.7713 48 1 7.0783 0.0423 -0.5992 49 1 8.9258 -1.8568 1.9580 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491719.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:44:49 Heat of formation + Delta-G solvation = -62.300092 kcal Electronic energy + Delta-G solvation = -27944.947654 eV Core-core repulsion = 24258.014921 eV Total energy + Delta-G solvation = -3686.932733 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.34838 -39.24495 -37.84931 -36.09523 -33.56812 -32.19734 -31.84834 -30.98786 -30.59087 -29.00372 -27.68806 -25.29663 -24.55816 -23.06782 -22.29564 -21.49160 -21.08662 -20.43333 -18.95163 -17.40387 -16.74167 -16.45925 -16.09487 -16.03516 -15.66156 -15.04315 -14.82803 -14.41277 -14.31846 -14.03021 -13.55497 -13.20523 -13.13984 -12.99526 -12.71935 -12.63775 -12.44874 -12.29391 -12.11418 -11.99376 -11.70549 -11.61144 -11.54581 -11.29718 -10.99637 -10.86117 -10.76075 -10.61215 -10.39039 -10.37720 -10.17512 -9.91820 -9.50295 -9.12795 -8.78470 -8.65091 -8.49417 -8.16175 -7.88583 -5.79498 -3.81665 1.55958 1.68091 2.59550 2.76102 3.39399 3.46914 3.50405 3.93313 4.37401 4.59197 4.85625 4.91526 4.99777 5.01272 5.03574 5.18604 5.21565 5.27669 5.29683 5.32234 5.40976 5.49716 5.54757 5.60226 5.68376 5.68842 5.72810 5.72924 5.85115 5.87762 5.93119 6.15407 6.21652 6.24857 6.34079 6.37335 6.64952 6.66895 6.69824 6.81262 6.86234 6.94959 7.26346 7.29539 7.38932 7.49154 7.95818 8.16688 8.21984 8.37234 8.65487 9.29417 9.80380 11.30650 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008043 B = 0.004910 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3480.454803 B = 5701.633856 C = 7307.782625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.371 6.371 4 C 0.449 3.551 5 O -0.460 6.460 6 C 0.061 3.939 7 N -0.499 5.499 8 C 0.093 3.907 9 C -0.075 4.075 10 C -0.123 4.123 11 C -0.129 4.129 12 C -0.125 4.125 13 C -0.120 4.120 14 C -0.082 4.082 15 C 0.078 3.922 16 H 0.087 0.913 17 C -0.188 4.188 18 C -0.100 4.100 19 C 0.034 3.966 20 C -0.519 4.519 21 H 0.049 0.951 22 C 0.058 3.942 23 N -0.889 5.889 24 Si 0.881 3.119 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.286 1.286 28 H 0.063 0.937 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.110 0.890 34 H 0.072 0.928 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.120 0.880 41 H 0.134 0.866 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.045 0.955 45 H 0.049 0.951 46 H 0.047 0.953 47 H 0.033 0.967 48 H 0.012 0.988 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.023 12.383 -0.498 19.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.289 6.289 4 C 0.288 3.712 5 O -0.343 6.343 6 C -0.068 4.068 7 N -0.223 5.223 8 C -0.033 4.033 9 C -0.075 4.075 10 C -0.142 4.142 11 C -0.147 4.147 12 C -0.144 4.144 13 C -0.138 4.138 14 C -0.101 4.101 15 C -0.030 4.030 16 H 0.105 0.895 17 C -0.247 4.247 18 C -0.137 4.137 19 C -0.003 4.003 20 C -0.558 4.558 21 H 0.068 0.932 22 C -0.142 4.142 23 N -0.528 5.528 24 Si 0.710 3.290 25 H -0.199 1.199 26 H -0.212 1.212 27 H -0.213 1.213 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.060 0.940 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.133 0.867 40 H 0.138 0.862 41 H 0.152 0.848 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.067 0.933 46 H 0.066 0.934 47 H 0.051 0.949 48 H 0.030 0.970 49 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.678 11.539 -0.040 18.670 hybrid contribution 0.747 -0.013 -0.367 0.833 sum -13.931 11.526 -0.407 18.085 Atomic orbital electron populations 1.21786 0.93019 1.02723 1.03166 1.22941 0.94847 0.80599 1.02801 1.86442 1.25230 1.32143 1.85075 1.23643 0.80293 0.93111 0.74103 1.90820 1.59569 1.42233 1.41687 1.21583 0.90640 0.90782 1.03842 1.61708 1.01865 1.27348 1.31332 1.21114 1.01697 0.89302 0.91217 1.19811 0.95041 0.97230 0.95442 1.20994 0.97772 1.00041 0.95344 1.20992 0.99249 1.00986 0.93475 1.21090 0.95228 0.98777 0.99284 1.21210 0.98182 0.98657 0.95732 1.21284 0.99218 0.96675 0.92896 1.22036 0.99388 0.96563 0.84993 0.89523 1.22571 1.00540 1.00568 1.01035 1.21722 0.90359 1.00994 1.00648 1.18945 0.95107 0.91297 0.94923 1.21396 0.93141 1.15076 1.26173 0.93239 1.24982 0.96744 0.96460 0.96056 1.70027 1.32890 1.20487 1.29429 0.86714 0.86623 0.78045 0.77633 1.19937 1.21215 1.21267 0.91747 0.90452 0.91648 0.91373 0.91172 0.87230 0.91015 0.88307 0.93992 0.86756 0.86687 0.86690 0.86190 0.84793 0.92439 0.91929 0.93557 0.93278 0.93444 0.94881 0.96975 0.93432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.29 37.15 0.38 -0.92 16 2 C 0.06 0.77 6.19 37.15 0.23 1.00 16 3 O -0.37 -5.29 10.22 -39.25 -0.40 -5.69 16 4 C 0.45 7.47 7.61 36.00 0.27 7.74 16 5 O -0.46 -9.76 14.62 -18.75 -0.27 -10.04 16 6 C 0.06 0.85 5.29 -4.97 -0.03 0.83 16 7 N -0.50 -8.25 3.46 -229.52 -0.79 -9.04 16 8 C 0.09 1.34 3.71 -4.98 -0.02 1.32 16 9 C -0.07 -1.10 5.06 -104.63 -0.53 -1.63 16 10 C -0.12 -1.54 8.37 -39.58 -0.33 -1.87 16 11 C -0.13 -1.55 10.05 -39.58 -0.40 -1.95 16 12 C -0.13 -1.60 10.05 -39.59 -0.40 -2.00 16 13 C -0.12 -1.77 10.05 -39.59 -0.40 -2.16 16 14 C -0.08 -1.36 9.72 -39.58 -0.38 -1.74 16 15 C 0.08 1.35 1.99 -67.72 -0.13 1.22 16 16 H 0.09 1.70 6.33 -51.93 -0.33 1.37 16 17 C -0.19 -2.51 8.54 37.15 0.32 -2.19 16 18 C -0.10 -2.07 4.57 -26.73 -0.12 -2.20 16 19 C 0.03 0.93 4.86 -27.88 -0.14 0.79 16 20 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 21 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 22 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 23 N -0.89 -27.95 13.29 55.43 0.74 -27.21 16 24 Si 0.88 22.30 29.54 -169.99 -5.02 17.28 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.86 8.13 -51.93 -0.42 0.44 16 32 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 33 H 0.11 1.40 6.10 -51.93 -0.32 1.08 16 34 H 0.07 0.84 6.25 -51.93 -0.32 0.51 16 35 H 0.10 1.53 5.77 -51.92 -0.30 1.23 16 36 H 0.04 0.50 7.24 -51.93 -0.38 0.12 16 37 H 0.11 1.16 7.87 -52.48 -0.41 0.74 16 38 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 39 H 0.12 1.20 8.06 -52.48 -0.42 0.78 16 40 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.13 2.50 8.06 -52.49 -0.42 2.07 16 42 H 0.06 0.71 6.77 -51.93 -0.35 0.36 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.05 0.54 6.49 -51.93 -0.34 0.20 16 45 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.94 6.08 -51.93 -0.32 0.63 16 47 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 48 H 0.01 0.36 8.14 -51.92 -0.42 -0.06 16 49 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -34.27 393.38 -9.99 -44.26 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -8.08 Total: 2.07 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: -2.08 Total: -17.56 kcal Atomic # 7 Polarization: -36.20 SS G_CDS: -0.06 Total: -36.25 kcal Atomic # 8 Polarization: -15.06 SS G_CDS: -0.68 Total: -15.73 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -34.27 -9.99 -44.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491719.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.042 kcal (2) G-P(sol) polarization free energy of solvation -34.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds