Wall clock time and date at job start Tue Mar 31 2020 14:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35984 * 116.99659 * 2 1 4 4 C 1.38719 * 119.99877 * 359.97438 * 3 2 1 5 5 C 1.38112 * 119.99764 * 179.97438 * 4 3 2 6 6 C 1.38719 * 119.99983 * 0.02562 * 5 4 3 7 7 O 1.35984 * 119.99870 * 179.97438 * 6 5 4 8 8 C 1.42900 * 117.00281 * 0.02562 * 7 6 5 9 9 C 1.38674 * 120.00050 * 0.27139 * 6 5 4 10 10 C 1.50704 * 120.00173 * 179.72872 * 9 6 5 11 11 N 1.46897 * 109.47175 * 79.99698 * 10 9 6 12 12 C 1.46893 * 111.00113 * 180.02562 * 11 10 9 13 13 C 1.53003 * 109.47324 * 275.00310 * 12 11 10 14 14 C 1.53002 * 109.46579 * 299.99664 * 13 12 11 15 15 C 1.52996 * 109.47353 * 299.99920 * 14 13 12 16 16 C 1.50702 * 109.46888 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99842 * 245.44285 * 16 15 14 18 18 C 1.37881 * 120.00144 * 65.44730 * 16 15 14 19 19 N 1.31511 * 119.99678 * 9.56967 * 18 16 15 20 20 Si 1.86801 * 119.99910 * 189.57154 * 18 16 15 21 21 H 1.48497 * 109.46856 * 94.99200 * 20 18 16 22 22 H 1.48502 * 109.46999 * 214.98700 * 20 18 16 23 23 H 1.48496 * 109.47403 * 334.99066 * 20 18 16 24 24 C 1.52994 * 109.47297 * 60.00341 * 15 14 13 25 25 C 1.53003 * 109.47124 * 299.99867 * 24 15 14 26 26 C 1.38155 * 119.99667 * 359.46935 * 9 6 5 27 27 H 1.09001 * 109.46992 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47292 * 299.99963 * 1 2 3 29 29 H 1.09001 * 109.47242 * 60.00558 * 1 2 3 30 30 H 1.08005 * 120.00355 * 359.97438 * 4 3 2 31 31 H 1.08001 * 119.99897 * 179.97438 * 5 4 3 32 32 H 1.09005 * 109.46739 * 59.99413 * 8 7 6 33 33 H 1.08998 * 109.47363 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.46661 * 299.99852 * 8 7 6 35 35 H 1.08996 * 109.47247 * 199.99891 * 10 9 6 36 36 H 1.09000 * 109.46479 * 319.99885 * 10 9 6 37 37 H 1.00898 * 110.99773 * 56.04424 * 11 10 9 38 38 H 1.09003 * 109.47094 * 35.00442 * 12 11 10 39 39 H 1.08993 * 109.46979 * 59.99717 * 13 12 11 40 40 H 1.08998 * 109.47152 * 180.02562 * 13 12 11 41 41 H 1.09007 * 109.46596 * 179.97438 * 14 13 12 42 42 H 1.09003 * 109.47404 * 60.00378 * 14 13 12 43 43 H 1.08998 * 109.47494 * 300.00148 * 15 14 13 44 44 H 0.97007 * 119.99678 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.47564 * 179.97438 * 24 15 14 46 46 H 1.09005 * 109.47393 * 59.99489 * 24 15 14 47 47 H 1.08993 * 109.47023 * 300.00150 * 25 24 15 48 48 H 1.08994 * 109.47258 * 179.97438 * 25 24 15 49 49 H 1.08007 * 119.99748 * 180.27180 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2907 2.3750 -0.0005 5 6 1.9177 3.6056 0.0000 6 6 3.3030 3.6783 0.0005 7 8 3.9203 4.8899 0.0005 8 6 3.0803 6.0460 0.0005 9 6 4.0583 2.5153 -0.0052 10 6 5.5633 2.5942 -0.0107 11 7 6.0449 2.8568 1.3519 12 6 7.5111 2.9410 1.3850 13 6 8.0998 1.5351 1.5183 14 6 7.5966 0.8922 2.8123 15 6 8.0318 1.7428 4.0072 16 6 7.5366 1.1091 5.2817 17 1 6.8010 1.6176 5.8873 18 6 8.0228 -0.1199 5.6747 19 7 9.0479 -0.6529 5.0467 20 14 7.2252 -1.0277 7.0992 21 1 6.2219 -1.9884 6.5743 22 1 8.2652 -1.7650 7.8608 23 1 6.5544 -0.0515 7.9949 24 6 7.4431 3.1486 3.8739 25 6 7.9463 3.7917 2.5800 26 6 3.4311 1.2843 -0.0003 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 0.2122 2.3185 -0.0014 31 1 1.3294 4.5113 -0.0008 32 1 2.4510 6.0378 0.8905 33 1 3.6981 6.9440 0.0010 34 1 2.4511 6.0378 -0.8895 35 1 5.9753 1.6498 -0.3660 36 1 5.8822 3.4010 -0.6707 37 1 5.7080 2.1568 1.9957 38 1 7.8696 3.3992 0.4632 39 1 7.7898 0.9292 0.6670 40 1 9.1877 1.5977 1.5433 41 1 8.0157 -0.1096 2.9070 42 1 6.5087 0.8296 2.7878 43 1 9.1197 1.8053 4.0318 44 1 9.3897 -1.5178 5.3229 45 1 7.7528 3.7545 4.7255 46 1 6.3551 3.0861 3.8494 47 1 9.0342 3.8541 2.6045 48 1 7.5266 4.7930 2.4848 49 1 4.0194 0.3785 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173324115.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:04 Heat of formation + Delta-G solvation = -62.797702 kcal Electronic energy + Delta-G solvation = -27621.305376 eV Core-core repulsion = 23934.351065 eV Total energy + Delta-G solvation = -3686.954311 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.53884 -38.99470 -38.39753 -36.50414 -34.34569 -32.54732 -30.96861 -29.89414 -29.58212 -28.47499 -27.47069 -26.92936 -24.93510 -24.19162 -22.20441 -21.50592 -21.06311 -20.61877 -18.11133 -17.95509 -17.55798 -16.88729 -16.22797 -15.91008 -15.56311 -15.45356 -14.83420 -14.55755 -14.50784 -14.13590 -13.96386 -13.53882 -13.28104 -12.88847 -12.86932 -12.75709 -12.40237 -12.13990 -12.03059 -11.93088 -11.66899 -11.59874 -11.45440 -11.20595 -11.07024 -10.82363 -10.64749 -10.52175 -10.43693 -10.06913 -9.98459 -9.90315 -9.23290 -8.97309 -8.76208 -8.56340 -8.20998 -7.78050 -7.69132 -5.93213 -3.93641 1.18358 1.47450 3.18636 3.35657 3.38219 3.42903 3.46389 3.66283 4.51798 4.59806 4.65987 4.85440 4.90057 4.97702 4.99959 5.07460 5.09787 5.27984 5.31905 5.38516 5.41007 5.42396 5.55158 5.63123 5.73321 5.79495 5.87223 5.88683 6.15258 6.23496 6.27623 6.30899 6.34868 6.47454 6.58992 6.61421 6.68709 6.75999 6.91656 7.05475 7.25180 7.25779 7.29553 7.47979 7.54477 7.61890 7.83948 7.96677 8.11686 8.14000 8.57692 9.11420 9.69404 11.15632 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.011124 B = 0.003831 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.489244 B = 7307.635673 C = 8794.894328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.088 3.912 4 C -0.171 4.171 5 C -0.176 4.176 6 C 0.117 3.883 7 O -0.298 6.298 8 C 0.028 3.972 9 C -0.070 4.070 10 C 0.107 3.893 11 N -0.673 5.673 12 C 0.095 3.905 13 C -0.149 4.149 14 C -0.100 4.100 15 C 0.048 3.952 16 C -0.512 4.512 17 H 0.053 0.947 18 C 0.063 3.937 19 N -0.889 5.889 20 Si 0.882 3.118 21 H -0.282 1.282 22 H -0.288 1.288 23 H -0.275 1.275 24 C -0.106 4.106 25 C -0.102 4.102 26 C -0.105 4.105 27 H 0.097 0.903 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.127 0.873 31 H 0.128 0.872 32 H 0.052 0.948 33 H 0.097 0.903 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.350 0.650 38 H 0.060 0.940 39 H 0.039 0.961 40 H 0.059 0.941 41 H 0.070 0.930 42 H 0.034 0.966 43 H 0.030 0.970 44 H 0.258 0.742 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.053 0.947 48 H 0.051 0.949 49 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.167 8.322 -14.386 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.044 3.956 4 C -0.190 4.190 5 C -0.195 4.195 6 C 0.071 3.929 7 O -0.211 6.211 8 C -0.067 4.067 9 C -0.071 4.071 10 C -0.021 4.021 11 N -0.307 5.307 12 C -0.015 4.015 13 C -0.188 4.188 14 C -0.139 4.139 15 C 0.029 3.971 16 C -0.550 4.550 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.528 5.528 20 Si 0.711 3.289 21 H -0.208 1.208 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.144 4.144 25 C -0.140 4.140 26 C -0.124 4.124 27 H 0.116 0.884 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.144 0.856 31 H 0.146 0.854 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.098 0.902 37 H 0.172 0.828 38 H 0.079 0.921 39 H 0.058 0.942 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.061 0.939 46 H 0.071 0.929 47 H 0.072 0.928 48 H 0.069 0.931 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -14.840 8.710 -14.421 22.451 hybrid contribution -0.840 -1.371 0.708 1.757 sum -15.679 7.338 -13.713 22.085 Atomic orbital electron populations 1.22999 0.78861 1.03721 1.01016 1.86095 1.20931 1.26760 1.89382 1.18809 0.92135 0.84137 1.00547 1.20945 0.99682 0.91740 1.06632 1.20968 0.93299 0.98200 1.07039 1.18648 0.90257 0.85564 0.98382 1.86211 1.34600 1.11705 1.88557 1.23001 0.95886 0.87154 1.00687 1.19012 0.96002 0.89523 1.02605 1.20688 0.88707 1.00030 0.92723 1.60715 1.09724 1.54507 1.05722 1.21475 0.86625 0.95416 0.97966 1.22262 1.00994 0.96414 0.99149 1.21513 0.97949 1.01438 0.92976 1.18650 0.96407 0.89284 0.92734 1.21247 1.23523 1.03322 1.06934 0.92838 1.24949 0.94551 0.97817 0.96456 1.69976 1.23170 1.17739 1.41939 0.86734 0.79289 0.80121 0.82805 1.20821 1.21445 1.19946 1.21559 1.00053 0.98373 0.94369 1.21504 0.99195 0.97799 0.95497 1.20219 0.91373 0.97618 1.03176 0.88434 0.92815 0.93009 0.85552 0.85411 0.92934 0.88449 0.93329 0.94614 0.90231 0.82814 0.92138 0.94234 0.92260 0.91093 0.94770 0.95231 0.93247 0.93933 0.92933 0.92846 0.93053 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.01 10.50 -19.69 -0.21 -4.22 16 3 C 0.09 1.17 6.68 -39.24 -0.26 0.90 16 4 C -0.17 -1.95 9.03 -39.45 -0.36 -2.31 16 5 C -0.18 -2.04 9.03 -39.45 -0.36 -2.40 16 6 C 0.12 1.59 6.66 -39.24 -0.26 1.33 16 7 O -0.30 -3.93 9.72 -19.69 -0.19 -4.12 16 8 C 0.03 0.25 9.81 101.05 0.99 1.24 16 9 C -0.07 -1.01 5.40 -104.49 -0.56 -1.57 16 10 C 0.11 1.58 5.27 -4.98 -0.03 1.55 16 11 N -0.67 -11.31 5.75 -107.99 -0.62 -11.93 16 12 C 0.09 1.63 2.85 -67.71 -0.19 1.44 16 13 C -0.15 -2.84 5.52 -26.73 -0.15 -2.98 16 14 C -0.10 -2.31 4.78 -26.73 -0.13 -2.44 16 15 C 0.05 1.19 1.96 -91.78 -0.18 1.01 16 16 C -0.51 -14.27 8.48 -34.44 -0.29 -14.57 16 17 H 0.05 1.49 7.77 -52.48 -0.41 1.09 16 18 C 0.06 1.78 5.20 -17.82 -0.09 1.69 16 19 N -0.89 -25.92 12.16 55.43 0.67 -25.24 16 20 Si 0.88 21.71 29.55 -169.99 -5.02 16.68 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.11 -2.27 4.91 -26.73 -0.13 -2.40 16 25 C -0.10 -1.86 5.64 -26.73 -0.15 -2.01 16 26 C -0.10 -1.47 9.60 -39.45 -0.38 -1.85 16 27 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.13 1.11 6.29 -52.48 -0.33 0.78 16 31 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 32 H 0.05 0.43 7.66 -51.93 -0.40 0.03 16 33 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 35 H 0.04 0.51 7.30 -51.93 -0.38 0.13 16 36 H 0.08 1.14 7.76 -51.93 -0.40 0.74 16 37 H 0.35 6.51 5.56 -39.29 -0.22 6.29 16 38 H 0.06 0.96 7.80 -51.93 -0.40 0.55 16 39 H 0.04 0.70 7.45 -51.93 -0.39 0.31 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.07 1.85 6.91 -51.93 -0.36 1.49 16 42 H 0.03 0.77 6.26 -51.93 -0.32 0.45 16 43 H 0.03 0.82 8.09 -51.93 -0.42 0.40 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 45 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 46 H 0.05 1.14 7.21 -51.93 -0.37 0.77 16 47 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 48 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.14 1.86 8.04 -52.48 -0.42 1.44 16 LS Contribution 380.19 15.07 5.73 5.73 Total: -1.00 -30.74 380.19 -9.20 -39.94 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -8.02 Total: 5.29 kcal Atomic # 6 Polarization: -20.59 SS G_CDS: -1.54 Total: -22.13 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.05 Total: -37.17 kcal Atomic # 8 Polarization: -7.94 SS G_CDS: -0.40 Total: -8.34 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.74 -9.20 -39.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173324115.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.860 kcal (2) G-P(sol) polarization free energy of solvation -30.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds