Wall clock time and date at job start Tue Mar 31 2020 14:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00042 * 2 1 4 4 C 1.38771 * 120.02694 * 359.73574 * 3 2 1 5 5 C 1.38172 * 120.05455 * 180.29431 * 4 3 2 6 6 C 1.38178 * 120.11049 * 359.95343 * 5 4 3 7 7 C 1.38770 * 120.05161 * 0.04418 * 6 5 4 8 8 O 1.35899 * 120.02411 * 180.02562 * 7 6 5 9 9 C 1.42894 * 117.00266 * 359.97206 * 8 7 6 10 10 C 1.38629 * 119.94844 * 359.97438 * 7 6 5 11 11 C 1.50702 * 120.05709 * 180.02562 * 10 7 6 12 12 N 1.46893 * 109.47148 * 269.97748 * 11 10 7 13 13 C 1.46904 * 111.00365 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.46938 * 275.00354 * 13 12 11 15 15 C 1.53004 * 109.46790 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.46736 * 60.00354 * 15 14 13 17 17 C 1.50698 * 109.46996 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00491 * 119.99542 * 17 16 15 19 19 C 1.37881 * 120.00151 * 299.99825 * 17 16 15 20 20 N 1.31517 * 119.99770 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00224 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47151 * 90.00076 * 21 19 17 23 23 H 1.48497 * 109.47359 * 209.99805 * 21 19 17 24 24 H 1.48501 * 109.47260 * 330.00091 * 21 19 17 25 25 C 1.53001 * 109.47192 * 299.99400 * 16 15 14 26 26 C 1.52994 * 109.47360 * 155.00129 * 13 12 11 27 27 H 1.09004 * 109.46420 * 299.99136 * 1 2 3 28 28 H 1.08993 * 109.47450 * 59.99009 * 1 2 3 29 29 H 1.09002 * 109.47279 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.97434 * 0.24154 * 4 3 2 31 31 H 1.08008 * 119.94515 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.96963 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47355 * 300.00310 * 9 8 7 34 34 H 1.09003 * 109.46737 * 60.00258 * 9 8 7 35 35 H 1.08996 * 109.47557 * 180.02562 * 9 8 7 36 36 H 1.08997 * 109.46588 * 29.98076 * 11 10 7 37 37 H 1.09006 * 109.47198 * 149.97571 * 11 10 7 38 38 H 1.00899 * 110.99963 * 56.04787 * 12 11 10 39 39 H 1.09004 * 109.46328 * 34.99792 * 13 12 11 40 40 H 1.08996 * 109.47333 * 299.99234 * 14 13 12 41 41 H 1.09004 * 109.46947 * 60.00087 * 14 13 12 42 42 H 1.08996 * 109.47149 * 300.00071 * 15 14 13 43 43 H 1.09006 * 109.46791 * 179.97438 * 15 14 13 44 44 H 1.09002 * 109.47159 * 59.99725 * 16 15 14 45 45 H 0.97002 * 119.99947 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.47333 * 300.00674 * 25 16 15 47 47 H 1.08996 * 109.47070 * 180.02562 * 25 16 15 48 48 H 1.08994 * 109.46992 * 300.00345 * 26 13 12 49 49 H 1.09002 * 109.46966 * 60.00277 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2908 2.3751 -0.0055 5 6 1.9175 3.6065 -0.0117 6 6 3.2972 3.6821 -0.0114 7 6 4.0568 2.5208 -0.0058 8 8 5.4137 2.5958 -0.0049 9 6 5.9912 3.9028 -0.0106 10 6 3.4304 1.2841 0.0000 11 6 4.2530 0.0213 0.0067 12 7 4.5205 -0.3961 -1.3761 13 6 5.3225 -1.6264 -1.4089 14 6 6.8065 -1.2708 -1.2985 15 6 7.6418 -2.5523 -1.3321 16 6 7.3907 -3.2903 -2.6486 17 6 8.2139 -4.5522 -2.6819 18 1 7.7274 -5.5121 -2.7725 19 6 9.5882 -4.4813 -2.5967 20 7 10.1807 -3.3124 -2.4858 21 14 10.6085 -6.0454 -2.6373 22 1 10.9608 -6.3703 -4.0429 23 1 11.8511 -5.8465 -1.8490 24 1 9.8248 -7.1630 -2.0525 25 6 5.9067 -3.6459 -2.7589 26 6 5.0713 -2.3640 -2.7255 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2122 2.3186 -0.0059 31 1 1.3279 4.5114 -0.0164 32 1 3.7847 4.6458 -0.0158 33 1 5.6689 4.4387 -0.9034 34 1 5.6673 4.4470 0.8766 35 1 7.0780 3.8199 -0.0097 36 1 5.1968 0.2054 0.5198 37 1 3.7055 -0.7662 0.5245 38 1 4.9703 0.3424 -1.8961 39 1 5.0393 -2.2670 -0.5737 40 1 7.0898 -0.6302 -2.1337 41 1 6.9854 -0.7453 -0.3604 42 1 7.3585 -3.1926 -0.4967 43 1 8.6991 -2.2989 -1.2539 44 1 7.6740 -2.6499 -3.4839 45 1 11.1476 -3.2624 -2.4263 46 1 5.6234 -4.2862 -1.9236 47 1 5.7279 -4.1721 -3.6966 48 1 4.0141 -2.6173 -2.8041 49 1 5.3546 -1.7233 -3.5607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173327475.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:09 Heat of formation + Delta-G solvation = -66.021781 kcal Electronic energy + Delta-G solvation = -27385.625228 eV Core-core repulsion = 23698.531110 eV Total energy + Delta-G solvation = -3687.094118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.71140 -39.09129 -38.02307 -36.51264 -34.88895 -32.61525 -31.11499 -29.65632 -29.50579 -28.28157 -27.96640 -26.85921 -25.18574 -23.62835 -21.89752 -21.55557 -21.26437 -20.38747 -18.81313 -18.49394 -16.96175 -16.44701 -16.22891 -16.10276 -15.96926 -15.61458 -14.95273 -14.86693 -14.45215 -14.38755 -13.70298 -13.36842 -13.15665 -13.05124 -12.76823 -12.60536 -12.50766 -12.24352 -12.12489 -11.84267 -11.65376 -11.64595 -11.31750 -11.17628 -10.95658 -10.87475 -10.78274 -10.60570 -10.33097 -10.17306 -10.00656 -9.78661 -9.25921 -8.88712 -8.58479 -8.42347 -8.25353 -8.21319 -7.71879 -5.88705 -3.94475 1.20705 1.31325 2.80928 3.35618 3.42084 3.45805 3.55449 3.57334 4.50842 4.52911 4.74270 4.80833 4.83276 4.91854 4.96778 4.98868 5.00650 5.13496 5.27204 5.33493 5.35563 5.40076 5.54990 5.64387 5.70488 5.86196 6.01555 6.10457 6.12872 6.24941 6.32416 6.34069 6.38076 6.48581 6.54135 6.57813 6.81900 6.84646 6.95546 7.08151 7.20759 7.26391 7.30840 7.37064 7.57800 7.69020 7.84998 7.89642 8.14863 8.27505 8.58861 9.10158 9.69499 11.16528 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018906 B = 0.002907 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.682336 B = 9628.052140 C =10821.126048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.299 6.299 3 C 0.184 3.816 4 C -0.249 4.249 5 C -0.045 4.045 6 C -0.248 4.248 7 C 0.169 3.831 8 O -0.307 6.307 9 C 0.029 3.971 10 C -0.144 4.144 11 C 0.117 3.883 12 N -0.678 5.678 13 C 0.092 3.908 14 C -0.141 4.141 15 C -0.105 4.105 16 C 0.049 3.951 17 C -0.510 4.510 18 H 0.053 0.947 19 C 0.059 3.941 20 N -0.891 5.891 21 Si 0.888 3.112 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.275 1.275 25 C -0.108 4.108 26 C -0.099 4.099 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.127 0.873 31 H 0.124 0.876 32 H 0.127 0.873 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.102 0.898 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.336 0.664 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.039 0.961 42 H 0.031 0.969 43 H 0.089 0.911 44 H 0.023 0.977 45 H 0.258 0.742 46 H 0.045 0.955 47 H 0.046 0.954 48 H 0.050 0.950 49 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.542 16.391 6.837 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.211 6.211 3 C 0.137 3.863 4 C -0.268 4.268 5 C -0.063 4.063 6 C -0.267 4.267 7 C 0.123 3.877 8 O -0.220 6.220 9 C -0.067 4.067 10 C -0.146 4.146 11 C -0.012 4.012 12 N -0.308 5.308 13 C -0.017 4.017 14 C -0.180 4.180 15 C -0.143 4.143 16 C 0.030 3.970 17 C -0.548 4.548 18 H 0.071 0.929 19 C -0.141 4.141 20 N -0.531 5.531 21 Si 0.716 3.284 22 H -0.208 1.208 23 H -0.214 1.214 24 H -0.200 1.200 25 C -0.146 4.146 26 C -0.137 4.137 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.118 0.882 30 H 0.145 0.855 31 H 0.142 0.858 32 H 0.145 0.855 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.120 0.880 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.153 0.847 39 H 0.086 0.914 40 H 0.070 0.930 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.107 0.893 44 H 0.041 0.959 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.064 0.936 48 H 0.068 0.932 49 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.743 15.770 6.797 24.692 hybrid contribution 1.214 0.126 0.265 1.249 sum -16.529 15.896 7.063 23.995 Atomic orbital electron populations 1.23068 0.78577 1.04004 1.01070 1.86173 1.20953 1.26219 1.87744 1.18401 0.90838 0.84285 0.92801 1.21102 0.99967 0.92212 1.13538 1.20624 0.93662 0.96981 0.95048 1.21077 0.94839 0.97275 1.13482 1.18517 0.82564 0.92848 0.93819 1.86128 1.17062 1.30745 1.88052 1.23085 0.99412 0.82959 1.01197 1.18360 0.90815 0.93649 1.11781 1.20456 0.96776 0.92675 0.91300 1.60766 1.51141 1.07008 1.11853 1.21605 0.91138 0.90374 0.98586 1.22262 0.95856 1.00261 0.99639 1.21541 1.01052 0.92900 0.98827 1.18647 0.89246 0.95272 0.93795 1.21275 0.91239 0.92979 1.49347 0.92867 1.24974 0.97984 0.95756 0.95391 1.69890 1.09259 1.23055 1.50861 0.86665 0.79817 0.84023 0.77897 1.20824 1.21372 1.20009 1.21631 0.97997 0.95120 0.99883 1.21475 0.98840 0.97217 0.96163 0.92889 0.92648 0.88170 0.85494 0.85772 0.85496 0.92550 0.92727 0.88009 0.94102 0.90377 0.84711 0.91374 0.92992 0.94246 0.95021 0.89293 0.95873 0.93233 0.93600 0.93554 0.93163 0.92992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.30 -3.79 9.54 -19.42 -0.19 -3.97 16 3 C 0.18 2.36 6.66 -39.24 -0.26 2.10 16 4 C -0.25 -2.59 9.04 -39.41 -0.36 -2.95 16 5 C -0.04 -0.43 10.04 -39.63 -0.40 -0.82 16 6 C -0.25 -2.59 9.04 -39.41 -0.36 -2.95 16 7 C 0.17 2.17 6.66 -39.24 -0.26 1.91 16 8 O -0.31 -3.93 9.54 -19.42 -0.19 -4.12 16 9 C 0.03 0.24 9.81 101.05 0.99 1.23 16 10 C -0.14 -2.03 5.42 -104.33 -0.57 -2.60 16 11 C 0.12 1.81 5.16 -4.98 -0.03 1.79 16 12 N -0.68 -11.30 6.24 -107.99 -0.67 -11.97 16 13 C 0.09 1.70 2.47 -67.71 -0.17 1.54 16 14 C -0.14 -2.87 5.17 -26.73 -0.14 -3.01 16 15 C -0.10 -2.54 4.98 -26.73 -0.13 -2.67 16 16 C 0.05 1.25 2.10 -91.77 -0.19 1.05 16 17 C -0.51 -14.38 8.56 -34.44 -0.29 -14.67 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 20 N -0.89 -25.99 11.32 55.43 0.63 -25.36 16 21 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.11 -2.36 5.15 -26.71 -0.14 -2.50 16 26 C -0.10 -1.89 5.53 -26.71 -0.15 -2.04 16 27 H 0.05 0.34 7.67 -51.93 -0.40 -0.06 16 28 H 0.05 0.39 7.65 -51.93 -0.40 -0.01 16 29 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.13 1.01 6.29 -52.49 -0.33 0.68 16 31 H 0.12 0.83 8.06 -52.48 -0.42 0.41 16 32 H 0.13 1.03 6.29 -52.49 -0.33 0.70 16 33 H 0.06 0.41 7.66 -51.93 -0.40 0.01 16 34 H 0.05 0.38 7.66 -51.93 -0.40 -0.02 16 35 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.67 6.82 -51.93 -0.35 0.31 16 37 H 0.08 1.24 7.45 -51.93 -0.39 0.85 16 38 H 0.34 5.62 8.46 -39.29 -0.33 5.29 16 39 H 0.07 1.30 7.80 -51.93 -0.40 0.89 16 40 H 0.05 1.08 8.13 -51.93 -0.42 0.66 16 41 H 0.04 0.77 7.45 -51.93 -0.39 0.38 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 44 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 46 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 48 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 49 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -31.13 383.04 -9.41 -40.54 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: -8.20 Total: 4.16 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: -1.55 Total: -21.79 kcal Atomic # 7 Polarization: -37.28 SS G_CDS: -0.05 Total: -37.33 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: -0.37 Total: -8.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.13 -9.41 -40.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327475.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.478 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds