Wall clock time and date at job start Tue Mar 31 2020 14:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35899 * 117.00042 * 2 1 4 4 C 1.38771 * 120.02694 * 359.73574 * 3 2 1 5 5 C 1.38172 * 120.05455 * 180.29431 * 4 3 2 6 6 C 1.38178 * 120.11049 * 359.95343 * 5 4 3 7 7 C 1.38770 * 120.05161 * 0.04418 * 6 5 4 8 8 O 1.35899 * 120.02411 * 180.02562 * 7 6 5 9 9 C 1.42894 * 117.00266 * 359.97206 * 8 7 6 10 10 C 1.38629 * 119.94844 * 359.97438 * 7 6 5 11 11 C 1.50702 * 120.05709 * 180.02562 * 10 7 6 12 12 N 1.46893 * 109.47148 * 269.97748 * 11 10 7 13 13 C 1.46904 * 111.00365 * 179.97438 * 12 11 10 14 14 C 1.53001 * 109.46938 * 275.00354 * 13 12 11 15 15 C 1.53004 * 109.46790 * 179.97438 * 14 13 12 16 16 C 1.53002 * 109.46736 * 60.00354 * 15 14 13 17 17 C 1.50698 * 109.46996 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00491 * 119.99542 * 17 16 15 19 19 C 1.37881 * 120.00151 * 299.99825 * 17 16 15 20 20 N 1.31517 * 119.99770 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00224 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47151 * 90.00076 * 21 19 17 23 23 H 1.48497 * 109.47359 * 209.99805 * 21 19 17 24 24 H 1.48501 * 109.47260 * 330.00091 * 21 19 17 25 25 C 1.53001 * 109.47192 * 299.99400 * 16 15 14 26 26 C 1.52994 * 109.47360 * 155.00129 * 13 12 11 27 27 H 1.09004 * 109.46420 * 299.99136 * 1 2 3 28 28 H 1.08993 * 109.47450 * 59.99009 * 1 2 3 29 29 H 1.09002 * 109.47279 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.97434 * 0.24154 * 4 3 2 31 31 H 1.08008 * 119.94515 * 179.97438 * 5 4 3 32 32 H 1.08001 * 119.96963 * 180.02562 * 6 5 4 33 33 H 1.09002 * 109.47355 * 300.00310 * 9 8 7 34 34 H 1.09003 * 109.46737 * 60.00258 * 9 8 7 35 35 H 1.08996 * 109.47557 * 180.02562 * 9 8 7 36 36 H 1.08997 * 109.46588 * 29.98076 * 11 10 7 37 37 H 1.09006 * 109.47198 * 149.97571 * 11 10 7 38 38 H 1.00899 * 110.99963 * 56.04787 * 12 11 10 39 39 H 1.09004 * 109.46328 * 34.99792 * 13 12 11 40 40 H 1.08996 * 109.47333 * 299.99234 * 14 13 12 41 41 H 1.09004 * 109.46947 * 60.00087 * 14 13 12 42 42 H 1.08996 * 109.47149 * 300.00071 * 15 14 13 43 43 H 1.09006 * 109.46791 * 179.97438 * 15 14 13 44 44 H 1.09002 * 109.47159 * 59.99725 * 16 15 14 45 45 H 0.97002 * 119.99947 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.47333 * 300.00674 * 25 16 15 47 47 H 1.08996 * 109.47070 * 180.02562 * 25 16 15 48 48 H 1.08994 * 109.46992 * 300.00345 * 26 13 12 49 49 H 1.09002 * 109.46966 * 60.00277 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2908 2.3751 -0.0055 5 6 1.9175 3.6065 -0.0117 6 6 3.2972 3.6821 -0.0114 7 6 4.0568 2.5208 -0.0058 8 8 5.4137 2.5958 -0.0049 9 6 5.9912 3.9028 -0.0106 10 6 3.4304 1.2841 0.0000 11 6 4.2530 0.0213 0.0067 12 7 4.5205 -0.3961 -1.3761 13 6 5.3225 -1.6264 -1.4089 14 6 6.8065 -1.2708 -1.2985 15 6 7.6418 -2.5523 -1.3321 16 6 7.3907 -3.2903 -2.6486 17 6 8.2139 -4.5522 -2.6819 18 1 7.7274 -5.5121 -2.7725 19 6 9.5882 -4.4813 -2.5967 20 7 10.1807 -3.3124 -2.4858 21 14 10.6085 -6.0454 -2.6373 22 1 10.9608 -6.3703 -4.0429 23 1 11.8511 -5.8465 -1.8490 24 1 9.8248 -7.1630 -2.0525 25 6 5.9067 -3.6459 -2.7589 26 6 5.0713 -2.3640 -2.7255 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 -0.3634 -1.0277 -0.0005 30 1 0.2122 2.3186 -0.0059 31 1 1.3279 4.5114 -0.0164 32 1 3.7847 4.6458 -0.0158 33 1 5.6689 4.4387 -0.9034 34 1 5.6673 4.4470 0.8766 35 1 7.0780 3.8199 -0.0097 36 1 5.1968 0.2054 0.5198 37 1 3.7055 -0.7662 0.5245 38 1 4.9703 0.3424 -1.8961 39 1 5.0393 -2.2670 -0.5737 40 1 7.0898 -0.6302 -2.1337 41 1 6.9854 -0.7453 -0.3604 42 1 7.3585 -3.1926 -0.4967 43 1 8.6991 -2.2989 -1.2539 44 1 7.6740 -2.6499 -3.4839 45 1 11.1476 -3.2624 -2.4263 46 1 5.6234 -4.2862 -1.9236 47 1 5.7279 -4.1721 -3.6966 48 1 4.0141 -2.6173 -2.8041 49 1 5.3546 -1.7233 -3.5607 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173327475.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:08 Heat of formation + Delta-G solvation = -84.666010 kcal Electronic energy + Delta-G solvation = -27386.433702 eV Core-core repulsion = 23698.531110 eV Total energy + Delta-G solvation = -3687.902592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.55575 -39.90733 -39.68986 -37.34695 -36.42254 -34.41851 -32.46770 -31.30370 -30.44020 -29.87288 -28.63867 -27.64306 -26.70975 -25.23721 -23.21828 -22.68548 -22.38959 -22.08997 -20.51433 -19.40605 -18.37703 -17.81958 -17.24857 -17.09396 -16.89549 -16.56604 -16.35293 -16.02171 -15.79818 -15.62673 -15.07720 -14.90319 -14.45921 -14.37822 -14.02746 -14.01262 -13.65401 -13.48596 -13.20718 -13.14489 -12.90749 -12.86143 -12.69131 -12.52681 -12.33071 -12.30522 -12.19144 -12.10100 -11.78338 -11.69123 -11.59502 -11.52008 -11.17279 -10.78070 -10.56376 -10.37022 -9.41167 -9.12413 -9.04786 -8.05407 -6.19853 0.36787 0.49246 1.40844 1.41233 1.51831 2.06126 2.44449 2.72005 2.81961 3.19903 3.41969 3.79671 3.93733 3.98741 4.09201 4.14633 4.18346 4.32822 4.40654 4.44081 4.46150 4.47006 4.50210 4.55968 4.61377 4.64207 4.73850 4.74449 4.79401 4.81999 4.87312 4.97058 5.04551 5.12504 5.24678 5.29064 5.33222 5.40721 5.41446 5.47579 5.49720 5.60001 5.62405 5.70029 6.05404 6.16874 6.21352 6.42163 6.43387 6.50455 6.54169 6.92963 7.47809 8.98131 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.018906 B = 0.002907 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1480.682336 B = 9628.052140 C =10821.126048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.171 3.829 4 C -0.250 4.250 5 C -0.038 4.038 6 C -0.250 4.250 7 C 0.156 3.844 8 O -0.335 6.335 9 C 0.021 3.979 10 C -0.177 4.177 11 C 0.126 3.874 12 N -0.670 5.670 13 C 0.103 3.897 14 C -0.127 4.127 15 C -0.096 4.096 16 C 0.047 3.953 17 C -0.534 4.534 18 H 0.051 0.949 19 C 0.010 3.990 20 N -0.917 5.917 21 Si 0.953 3.047 22 H -0.276 1.276 23 H -0.284 1.284 24 H -0.269 1.269 25 C -0.100 4.100 26 C -0.089 4.089 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.153 0.847 31 H 0.160 0.840 32 H 0.151 0.849 33 H 0.068 0.932 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.026 0.974 37 H 0.069 0.931 38 H 0.336 0.664 39 H 0.065 0.935 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.025 0.975 43 H 0.056 0.944 44 H -0.009 1.009 45 H 0.259 0.741 46 H 0.046 0.954 47 H 0.047 0.953 48 H 0.069 0.931 49 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.524 17.591 7.114 27.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.240 6.240 3 C 0.124 3.876 4 C -0.268 4.268 5 C -0.056 4.056 6 C -0.268 4.268 7 C 0.110 3.890 8 O -0.249 6.249 9 C -0.074 4.074 10 C -0.179 4.179 11 C -0.003 4.003 12 N -0.299 5.299 13 C -0.007 4.007 14 C -0.166 4.166 15 C -0.135 4.135 16 C 0.028 3.972 17 C -0.572 4.572 18 H 0.069 0.931 19 C -0.188 4.188 20 N -0.557 5.557 21 Si 0.779 3.221 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.193 1.193 25 C -0.138 4.138 26 C -0.127 4.127 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.129 0.871 30 H 0.170 0.830 31 H 0.177 0.823 32 H 0.168 0.832 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.126 0.874 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.153 0.847 39 H 0.084 0.916 40 H 0.063 0.937 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.074 0.926 44 H 0.009 0.991 45 H 0.068 0.932 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.087 0.913 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -19.744 16.977 7.075 26.983 hybrid contribution 1.803 -0.185 0.189 1.823 sum -17.940 16.792 7.264 25.624 Atomic orbital electron populations 1.23336 0.76461 1.05281 1.02356 1.86125 1.23291 1.26699 1.87840 1.18596 0.90657 0.85224 0.93111 1.21422 1.01193 0.91637 1.12588 1.21088 0.93573 0.98009 0.92964 1.21389 0.95373 0.97400 1.12674 1.18710 0.82801 0.93296 0.94219 1.86083 1.17439 1.33160 1.88213 1.23326 0.99692 0.81744 1.02594 1.18382 0.91562 0.93291 1.14677 1.20305 0.96330 0.93643 0.90009 1.60761 1.49939 1.06283 1.12905 1.21407 0.89773 0.91324 0.98153 1.22102 0.96776 0.98092 0.99651 1.21337 0.99735 0.94454 0.97951 1.18614 0.91518 0.94032 0.93004 1.21649 0.92125 0.93775 1.49691 0.93080 1.25767 0.99176 0.98905 0.94978 1.70037 1.09486 1.24985 1.51222 0.85636 0.78149 0.80249 0.78108 1.20137 1.20919 1.19309 1.21500 0.95804 0.96549 0.99992 1.21368 0.99269 0.95802 0.96305 0.91223 0.91607 0.87069 0.82988 0.82283 0.83172 0.91305 0.91055 0.87447 0.95548 0.91216 0.84711 0.91646 0.93713 0.93599 0.95665 0.92586 0.99067 0.93194 0.93476 0.93372 0.91264 0.93250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.81 113.37 1.11 1.39 16 2 O -0.33 -7.99 9.54 -92.42 -0.88 -8.87 16 3 C 0.17 4.20 6.66 22.49 0.15 4.35 16 4 C -0.25 -4.52 9.04 22.38 0.20 -4.32 16 5 C -0.04 -0.60 10.04 22.24 0.22 -0.38 16 6 C -0.25 -4.61 9.04 22.38 0.20 -4.41 16 7 C 0.16 3.89 6.66 22.49 0.15 4.04 16 8 O -0.34 -8.53 9.54 -92.41 -0.88 -9.42 16 9 C 0.02 0.33 9.81 113.37 1.11 1.44 16 10 C -0.18 -4.95 5.42 -19.68 -0.11 -5.06 16 11 C 0.13 3.97 5.16 85.56 0.44 4.42 16 12 N -0.67 -22.33 6.24 -495.58 -3.09 -25.42 16 13 C 0.10 3.83 2.47 44.91 0.11 3.94 16 14 C -0.13 -5.31 5.17 30.60 0.16 -5.15 16 15 C -0.10 -4.83 4.98 30.60 0.15 -4.68 16 16 C 0.05 2.46 2.10 -11.54 -0.02 2.44 16 17 C -0.53 -30.75 8.56 25.60 0.22 -30.53 16 18 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 19 C 0.01 0.57 5.30 84.66 0.45 1.02 16 20 N -0.92 -54.90 11.32 21.45 0.24 -54.66 16 21 Si 0.95 45.06 29.54 68.60 2.03 47.09 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 25 C -0.10 -4.40 5.15 30.61 0.16 -4.25 16 26 C -0.09 -3.38 5.53 30.61 0.17 -3.21 16 27 H 0.07 0.73 7.67 -2.38 -0.02 0.71 16 28 H 0.07 0.77 7.65 -2.39 -0.02 0.75 16 29 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.15 1.87 6.29 -2.91 -0.02 1.86 16 31 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 32 H 0.15 1.96 6.29 -2.91 -0.02 1.94 16 33 H 0.07 0.89 7.66 -2.39 -0.02 0.87 16 34 H 0.07 0.86 7.66 -2.39 -0.02 0.84 16 35 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.03 0.89 6.82 -2.39 -0.02 0.88 16 37 H 0.07 2.27 7.45 -2.38 -0.02 2.25 16 38 H 0.34 11.30 8.46 -89.69 -0.76 10.54 16 39 H 0.07 2.49 7.80 -2.39 -0.02 2.47 16 40 H 0.04 1.92 8.13 -2.39 -0.02 1.90 16 41 H 0.05 1.84 7.45 -2.38 -0.02 1.82 16 42 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.06 3.19 6.07 -2.38 -0.01 3.17 16 44 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 45 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 46 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.05 1.89 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -68.83 383.04 2.47 -66.36 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: 0.18 Total: 23.87 kcal Atomic # 6 Polarization: -43.84 SS G_CDS: 4.88 Total: -38.96 kcal Atomic # 7 Polarization: -77.23 SS G_CDS: -2.85 Total: -80.08 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -1.76 Total: -18.29 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -68.83 2.47 -66.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173327475.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.307 kcal (2) G-P(sol) polarization free energy of solvation -68.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds