Wall clock time and date at job start Tue Mar 31 2020 14:02:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35905 * 117.00262 * 2 1
4 4 C 1.38729 * 120.05695 * 180.02562 * 3 2 1
5 5 C 1.38140 * 119.94541 * 179.97438 * 4 3 2
6 6 C 1.38266 * 120.05594 * 359.97438 * 5 4 3
7 7 C 1.50693 * 119.94446 * 179.97438 * 6 5 4
8 8 H 1.09001 * 109.47187 * 339.99918 * 7 6 5
9 9 O 1.42906 * 109.47159 * 220.00040 * 7 6 5
10 10 C 1.52998 * 109.47098 * 100.00153 * 7 6 5
11 11 N 1.46906 * 109.47020 * 184.99934 * 10 7 6
12 12 C 1.46902 * 110.99573 * 179.97438 * 11 10 7
13 13 C 1.52999 * 109.47083 * 274.99770 * 12 11 10
14 14 C 1.53004 * 109.47035 * 300.00178 * 13 12 11
15 15 C 1.53000 * 109.47366 * 300.00020 * 14 13 12
16 16 C 1.50696 * 109.46890 * 179.97438 * 15 14 13
17 17 H 1.07992 * 120.00162 * 239.99707 * 16 15 14
18 18 C 1.37877 * 120.00070 * 60.00410 * 16 15 14
19 19 N 1.31513 * 119.99942 * 359.97438 * 18 16 15
20 20 Si 1.86799 * 120.00151 * 179.97438 * 18 16 15
21 21 H 1.48503 * 109.46932 * 0.02562 * 20 18 16
22 22 H 1.48504 * 109.46814 * 119.99717 * 20 18 16
23 23 H 1.48496 * 109.47527 * 239.99888 * 20 18 16
24 24 C 1.52999 * 109.47060 * 59.99995 * 15 14 13
25 25 C 1.53000 * 109.46858 * 155.00031 * 12 11 10
26 26 C 1.38267 * 120.10995 * 0.27632 * 6 5 4
27 27 C 1.38149 * 120.05530 * 359.44363 * 26 6 5
28 28 H 1.08997 * 109.46882 * 60.00022 * 1 2 3
29 29 H 1.08995 * 109.47289 * 180.02562 * 1 2 3
30 30 H 1.08995 * 109.46979 * 300.00366 * 1 2 3
31 31 H 1.08003 * 120.02390 * 359.95207 * 4 3 2
32 32 H 1.07997 * 119.97440 * 180.02562 * 5 4 3
33 33 H 0.96700 * 113.99774 * 299.99832 * 9 7 6
34 34 H 1.09002 * 109.47142 * 65.00144 * 10 7 6
35 35 H 1.09000 * 109.46991 * 304.99889 * 10 7 6
36 36 H 1.00896 * 111.00309 * 56.04370 * 11 10 7
37 37 H 1.08995 * 109.47359 * 35.00383 * 12 11 10
38 38 H 1.09000 * 109.47023 * 60.00485 * 13 12 11
39 39 H 1.09004 * 109.46766 * 180.02562 * 13 12 11
40 40 H 1.09004 * 109.46690 * 179.97438 * 14 13 12
41 41 H 1.08999 * 109.46856 * 60.00135 * 14 13 12
42 42 H 1.09000 * 109.46877 * 300.00576 * 15 14 13
43 43 H 0.97002 * 120.00555 * 180.02562 * 19 18 16
44 44 H 1.09000 * 109.47023 * 179.97438 * 24 15 14
45 45 H 1.08999 * 109.47188 * 59.99869 * 24 15 14
46 46 H 1.09004 * 109.47319 * 180.02562 * 25 12 11
47 47 H 1.09004 * 109.47340 * 300.00004 * 25 12 11
48 48 H 1.07999 * 119.97307 * 179.71012 * 26 6 5
49 49 H 1.07998 * 120.02812 * 180.27389 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0461 1.2109 0.0000
4 6 3.4314 1.2848 -0.0005
5 6 4.0562 2.5168 -0.0011
6 6 3.3021 3.6757 -0.0016
7 6 3.9863 5.0184 -0.0016
8 1 5.0115 4.9038 0.3503
9 8 3.2826 5.9116 0.8640
10 6 3.9952 5.5862 -1.4223
11 7 4.7656 6.8369 -1.4449
12 6 4.7963 7.4118 -2.7964
13 6 5.9337 6.7735 -3.5964
14 6 7.2660 7.0467 -2.8954
15 6 7.4930 8.5569 -2.8022
16 6 8.8050 8.8259 -2.1112
17 1 8.8254 9.3952 -1.1938
18 6 9.9794 8.3452 -2.6505
19 7 9.9545 7.6516 -3.7676
20 14 11.6057 8.6792 -1.7945
21 1 11.3633 9.4753 -0.5645
22 1 12.2475 7.3903 -1.4308
23 1 12.4991 9.4369 -2.7071
24 6 6.3557 9.1952 -2.0022
25 6 5.0233 8.9220 -2.7031
26 6 1.9212 3.6048 0.0042
27 6 1.2916 2.3751 -0.0011
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8899
31 1 4.0209 0.3798 -0.0002
32 1 5.1346 2.5749 -0.0019
33 1 2.3614 6.0608 0.6105
34 1 2.9717 5.7842 -1.7409
35 1 4.4534 4.8650 -2.0990
36 1 5.6998 6.6925 -1.0923
37 1 3.8471 7.2173 -3.2957
38 1 5.7719 5.6977 -3.6628
39 1 5.9567 7.2005 -4.5990
40 1 8.0762 6.5916 -3.4652
41 1 7.2431 6.6201 -1.8927
42 1 7.5158 8.9835 -3.8050
43 1 10.7807 7.3131 -4.1468
44 1 6.5176 10.2710 -1.9354
45 1 6.3328 8.7685 -0.9994
46 1 5.0457 9.3487 -3.7059
47 1 4.2131 9.3767 -2.1331
48 1 1.3344 4.5114 0.0085
49 1 0.2130 2.3202 -0.0011
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001173329769.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:02:33
Heat of formation + Delta-G solvation = -78.668647 kcal
Electronic energy + Delta-G solvation = -26959.134072 eV
Core-core repulsion = 23271.491545 eV
Total energy + Delta-G solvation = -3687.642527 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-40.50391 -38.95619 -38.12046 -36.39641 -34.05171 -32.25834 -31.34062 -31.01122
-29.61699 -29.07672 -27.82254 -26.24377 -24.47196 -23.26463 -22.52624 -21.50173
-21.10071 -20.61099 -18.56549 -18.02927 -17.11669 -16.64776 -16.28209 -16.06395
-15.76780 -15.14614 -15.00005 -14.55167 -14.51392 -13.96832 -13.79598 -13.71662
-13.33014 -13.25862 -13.07500 -12.66375 -12.50230 -12.23911 -12.17781 -12.00166
-11.57437 -11.50177 -11.26429 -11.16579 -11.11523 -10.91204 -10.81208 -10.58890
-10.13616 -10.05206 -9.91352 -9.87490 -9.28097 -9.24730 -8.85926 -8.59666
-8.35216 -8.25103 -7.85680 -5.94017 -3.99620 1.09263 1.13695 2.95230
3.31742 3.40093 3.44743 3.46675 4.29191 4.46136 4.47769 4.49827
4.61063 4.73029 4.76966 4.96306 5.03799 5.08189 5.09544 5.24452
5.27180 5.35239 5.41780 5.53833 5.67653 5.70955 5.77527 5.82561
5.92091 6.00230 6.07578 6.22352 6.29386 6.41962 6.43156 6.48624
6.53716 6.64459 6.71104 6.86144 7.03356 7.08396 7.23746 7.26888
7.49806 7.56079 7.65773 7.80119 7.88610 8.08074 8.20188 8.53533
9.05628 9.65106 11.11326
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.018666 B = 0.002579 C = 0.002437
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1499.706256 B =10855.093584 C =11485.139538
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.027 3.973
2 O -0.319 6.319
3 C 0.122 3.878
4 C -0.149 4.149
5 C -0.068 4.068
6 C -0.146 4.146
7 C 0.154 3.846
8 H 0.106 0.894
9 O -0.541 6.541
10 C 0.034 3.966
11 N -0.675 5.675
12 C 0.093 3.907
13 C -0.149 4.149
14 C -0.107 4.107
15 C 0.048 3.952
16 C -0.508 4.508
17 H 0.055 0.945
18 C 0.059 3.941
19 N -0.892 5.892
20 Si 0.887 3.113
21 H -0.273 1.273
22 H -0.285 1.285
23 H -0.286 1.286
24 C -0.107 4.107
25 C -0.103 4.103
26 C -0.071 4.071
27 C -0.206 4.206
28 H 0.055 0.945
29 H 0.099 0.901
30 H 0.055 0.945
31 H 0.131 0.869
32 H 0.133 0.867
33 H 0.367 0.633
34 H 0.068 0.932
35 H 0.037 0.963
36 H 0.352 0.648
37 H 0.057 0.943
38 H 0.037 0.963
39 H 0.057 0.943
40 H 0.091 0.909
41 H 0.031 0.969
42 H 0.022 0.978
43 H 0.257 0.743
44 H 0.042 0.958
45 H 0.054 0.946
46 H 0.052 0.948
47 H 0.050 0.950
48 H 0.124 0.876
49 H 0.127 0.873
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -19.757 -12.729 5.522 24.143
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.233 6.233
3 C 0.077 3.923
4 C -0.167 4.167
5 C -0.086 4.086
6 C -0.147 4.147
7 C 0.095 3.905
8 H 0.124 0.876
9 O -0.345 6.345
10 C -0.097 4.097
11 N -0.309 5.309
12 C -0.017 4.017
13 C -0.188 4.188
14 C -0.145 4.145
15 C 0.030 3.970
16 C -0.546 4.546
17 H 0.073 0.927
18 C -0.141 4.141
19 N -0.532 5.532
20 Si 0.715 3.285
21 H -0.198 1.198
22 H -0.212 1.212
23 H -0.212 1.212
24 C -0.145 4.145
25 C -0.141 4.141
26 C -0.089 4.089
27 C -0.224 4.224
28 H 0.074 0.926
29 H 0.117 0.883
30 H 0.074 0.926
31 H 0.149 0.851
32 H 0.151 0.849
33 H 0.214 0.786
34 H 0.087 0.913
35 H 0.055 0.945
36 H 0.174 0.826
37 H 0.075 0.925
38 H 0.056 0.944
39 H 0.076 0.924
40 H 0.109 0.891
41 H 0.049 0.951
42 H 0.040 0.960
43 H 0.067 0.933
44 H 0.061 0.939
45 H 0.073 0.927
46 H 0.071 0.929
47 H 0.069 0.931
48 H 0.142 0.858
49 H 0.145 0.855
Dipole moment (debyes) X Y Z Total
from point charges -19.501 -12.599 5.922 23.960
hybrid contribution 0.753 -0.542 -0.497 1.053
sum -18.748 -13.141 5.425 23.529
Atomic orbital electron populations
1.23050 0.78420 1.03914 1.01381 1.86070 1.21378 1.27044 1.88786
1.19054 0.92410 0.84110 0.96681 1.20437 0.91364 0.98716 1.06225
1.20889 1.00181 0.90840 0.96729 1.20543 0.94156 0.96345 1.03677
1.20755 0.95806 0.83876 0.90100 0.87644 1.86670 1.27810 1.66424
1.53598 1.22617 0.99293 0.92140 0.95609 1.60683 1.21430 1.25528
1.23258 1.21491 0.96809 0.95499 0.87867 1.22268 0.98101 0.98193
1.00219 1.21589 0.94408 1.00556 0.97944 1.18653 0.91785 0.91228
0.95352 1.21311 0.91346 1.33129 1.08864 0.92709 1.24977 0.98928
0.95290 0.94941 1.69887 1.26897 1.36854 1.19555 0.86611 0.84179
0.77930 0.79730 1.19794 1.21174 1.21180 1.21573 0.93919 0.99471
0.99499 1.21509 0.98716 0.93959 0.99870 1.20663 0.93874 0.97076
0.97301 1.21170 0.99931 0.92264 1.09081 0.92627 0.88266 0.92645
0.85072 0.84926 0.78555 0.91347 0.94528 0.82613 0.92492 0.94393
0.92424 0.89104 0.95066 0.95979 0.93262 0.93937 0.92695 0.92898
0.93089 0.85838 0.85481
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.16 9.81 101.05 0.99 1.15 16
2 O -0.32 -3.13 10.50 -19.44 -0.20 -3.34 16
3 C 0.12 1.29 6.69 -39.22 -0.26 1.02 16
4 C -0.15 -1.58 9.99 -39.44 -0.39 -1.97 16
5 C -0.07 -0.73 9.66 -39.61 -0.38 -1.12 16
6 C -0.15 -1.60 4.97 -104.60 -0.52 -2.12 16
7 C 0.15 1.86 3.38 -27.89 -0.09 1.77 16
8 H 0.11 1.36 8.00 -51.93 -0.42 0.94 16
9 O -0.54 -6.85 13.13 -35.23 -0.46 -7.32 16
10 C 0.03 0.44 5.10 -3.82 -0.02 0.42 16
11 N -0.67 -10.67 5.71 -106.72 -0.61 -11.28 16
12 C 0.09 1.55 2.86 -67.71 -0.19 1.36 16
13 C -0.15 -2.79 5.52 -26.73 -0.15 -2.94 16
14 C -0.11 -2.43 4.73 -26.73 -0.13 -2.55 16
15 C 0.05 1.18 2.10 -91.77 -0.19 0.99 16
16 C -0.51 -13.92 8.56 -34.44 -0.29 -14.21 16
17 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16
18 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16
19 N -0.89 -25.43 11.32 55.43 0.63 -24.80 16
20 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 16
21 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16
22 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16
23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16
24 C -0.11 -2.24 4.90 -26.73 -0.13 -2.38 16
25 C -0.10 -1.82 5.64 -26.73 -0.15 -1.98 16
26 C -0.07 -0.68 9.32 -39.60 -0.37 -1.05 16
27 C -0.21 -1.92 9.04 -39.43 -0.36 -2.28 16
28 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16
29 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16
30 H 0.05 0.27 7.66 -51.93 -0.40 -0.13 16
31 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16
32 H 0.13 1.26 8.03 -52.49 -0.42 0.84 16
33 H 0.37 3.40 7.49 45.56 0.34 3.74 16
34 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16
35 H 0.04 0.50 7.43 -51.93 -0.39 0.11 16
36 H 0.35 6.19 5.56 -39.29 -0.22 5.97 16
37 H 0.06 0.87 7.80 -51.93 -0.41 0.47 16
38 H 0.04 0.67 7.45 -51.93 -0.39 0.28 16
39 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16
40 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16
41 H 0.03 0.69 6.26 -51.93 -0.32 0.37 16
42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16
43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16
44 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16
45 H 0.05 1.17 7.21 -51.93 -0.37 0.79 16
46 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16
47 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16
48 H 0.12 0.92 6.77 -52.49 -0.36 0.57 16
49 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16
LS Contribution 379.81 15.07 5.72 5.72
Total: -1.00 -30.39 379.81 -9.99 -40.38
By element:
Atomic # 1 Polarization: 15.91 SS G_CDS: -7.31 Total: 8.61 kcal
Atomic # 6 Polarization: -21.62 SS G_CDS: -2.74 Total: -24.35 kcal
Atomic # 7 Polarization: -36.10 SS G_CDS: 0.02 Total: -36.08 kcal
Atomic # 8 Polarization: -9.99 SS G_CDS: -0.67 Total: -10.66 kcal
Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal
Total LS contribution 5.72 Total: 5.72 kcal
Total: -30.39 -9.99 -40.38 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173329769.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -38.290 kcal
(2) G-P(sol) polarization free energy of solvation -30.387 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.676 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.379 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.669 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.60 seconds