Wall clock time and date at job start Tue Mar 31 2020 14:02:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.35905 * 117.00262 * 2 1
4 4 C 1.38729 * 120.05695 * 180.02562 * 3 2 1
5 5 C 1.38140 * 119.94541 * 179.97438 * 4 3 2
6 6 C 1.38266 * 120.05594 * 359.97438 * 5 4 3
7 7 C 1.50693 * 119.94446 * 179.97438 * 6 5 4
8 8 H 1.09001 * 109.47187 * 339.99918 * 7 6 5
9 9 O 1.42906 * 109.47159 * 220.00040 * 7 6 5
10 10 C 1.52998 * 109.47098 * 100.00153 * 7 6 5
11 11 N 1.46906 * 109.47020 * 184.99934 * 10 7 6
12 12 C 1.46902 * 110.99573 * 179.97438 * 11 10 7
13 13 C 1.52999 * 109.47083 * 274.99770 * 12 11 10
14 14 C 1.53004 * 109.47035 * 300.00178 * 13 12 11
15 15 C 1.53000 * 109.47366 * 300.00020 * 14 13 12
16 16 C 1.50696 * 109.46890 * 179.97438 * 15 14 13
17 17 H 1.07992 * 120.00162 * 239.99707 * 16 15 14
18 18 C 1.37877 * 120.00070 * 60.00410 * 16 15 14
19 19 N 1.31513 * 119.99942 * 359.97438 * 18 16 15
20 20 Si 1.86799 * 120.00151 * 179.97438 * 18 16 15
21 21 H 1.48503 * 109.46932 * 0.02562 * 20 18 16
22 22 H 1.48504 * 109.46814 * 119.99717 * 20 18 16
23 23 H 1.48496 * 109.47527 * 239.99888 * 20 18 16
24 24 C 1.52999 * 109.47060 * 59.99995 * 15 14 13
25 25 C 1.53000 * 109.46858 * 155.00031 * 12 11 10
26 26 C 1.38267 * 120.10995 * 0.27632 * 6 5 4
27 27 C 1.38149 * 120.05530 * 359.44363 * 26 6 5
28 28 H 1.08997 * 109.46882 * 60.00022 * 1 2 3
29 29 H 1.08995 * 109.47289 * 180.02562 * 1 2 3
30 30 H 1.08995 * 109.46979 * 300.00366 * 1 2 3
31 31 H 1.08003 * 120.02390 * 359.95207 * 4 3 2
32 32 H 1.07997 * 119.97440 * 180.02562 * 5 4 3
33 33 H 0.96700 * 113.99774 * 299.99832 * 9 7 6
34 34 H 1.09002 * 109.47142 * 65.00144 * 10 7 6
35 35 H 1.09000 * 109.46991 * 304.99889 * 10 7 6
36 36 H 1.00896 * 111.00309 * 56.04370 * 11 10 7
37 37 H 1.08995 * 109.47359 * 35.00383 * 12 11 10
38 38 H 1.09000 * 109.47023 * 60.00485 * 13 12 11
39 39 H 1.09004 * 109.46766 * 180.02562 * 13 12 11
40 40 H 1.09004 * 109.46690 * 179.97438 * 14 13 12
41 41 H 1.08999 * 109.46856 * 60.00135 * 14 13 12
42 42 H 1.09000 * 109.46877 * 300.00576 * 15 14 13
43 43 H 0.97002 * 120.00555 * 180.02562 * 19 18 16
44 44 H 1.09000 * 109.47023 * 179.97438 * 24 15 14
45 45 H 1.08999 * 109.47188 * 59.99869 * 24 15 14
46 46 H 1.09004 * 109.47319 * 180.02562 * 25 12 11
47 47 H 1.09004 * 109.47340 * 300.00004 * 25 12 11
48 48 H 1.07999 * 119.97307 * 179.71012 * 26 6 5
49 49 H 1.07998 * 120.02812 * 180.27389 * 27 26 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0461 1.2109 0.0000
4 6 3.4314 1.2848 -0.0005
5 6 4.0562 2.5168 -0.0011
6 6 3.3021 3.6757 -0.0016
7 6 3.9863 5.0184 -0.0016
8 1 5.0115 4.9038 0.3503
9 8 3.2826 5.9116 0.8640
10 6 3.9952 5.5862 -1.4223
11 7 4.7656 6.8369 -1.4449
12 6 4.7963 7.4118 -2.7964
13 6 5.9337 6.7735 -3.5964
14 6 7.2660 7.0467 -2.8954
15 6 7.4930 8.5569 -2.8022
16 6 8.8050 8.8259 -2.1112
17 1 8.8254 9.3952 -1.1938
18 6 9.9794 8.3452 -2.6505
19 7 9.9545 7.6516 -3.7676
20 14 11.6057 8.6792 -1.7945
21 1 11.3633 9.4753 -0.5645
22 1 12.2475 7.3903 -1.4308
23 1 12.4991 9.4369 -2.7071
24 6 6.3557 9.1952 -2.0022
25 6 5.0233 8.9220 -2.7031
26 6 1.9212 3.6048 0.0042
27 6 1.2916 2.3751 -0.0011
28 1 -0.3633 0.5138 -0.8900
29 1 -0.3633 -1.0276 0.0005
30 1 -0.3633 0.5139 0.8899
31 1 4.0209 0.3798 -0.0002
32 1 5.1346 2.5749 -0.0019
33 1 2.3614 6.0608 0.6105
34 1 2.9717 5.7842 -1.7409
35 1 4.4534 4.8650 -2.0990
36 1 5.6998 6.6925 -1.0923
37 1 3.8471 7.2173 -3.2957
38 1 5.7719 5.6977 -3.6628
39 1 5.9567 7.2005 -4.5990
40 1 8.0762 6.5916 -3.4652
41 1 7.2431 6.6201 -1.8927
42 1 7.5158 8.9835 -3.8050
43 1 10.7807 7.3131 -4.1468
44 1 6.5176 10.2710 -1.9354
45 1 6.3328 8.7685 -0.9994
46 1 5.0457 9.3487 -3.7059
47 1 4.2131 9.3767 -2.1331
48 1 1.3344 4.5114 0.0085
49 1 0.2130 2.3202 -0.0011
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001173329769.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 14:02:32
Heat of formation + Delta-G solvation = -97.882611 kcal
Electronic energy + Delta-G solvation = -26959.967252 eV
Core-core repulsion = 23271.491545 eV
Total energy + Delta-G solvation = -3688.475707 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.74 seconds
Orbital eigenvalues (eV)
-41.23466 -40.17231 -39.20070 -37.29302 -35.67272 -33.92831 -32.06221 -32.02873
-31.25568 -30.54609 -28.49554 -27.32444 -26.29862 -24.14249 -23.36089 -23.07879
-22.45065 -21.86999 -19.62153 -19.21212 -18.37750 -18.05149 -17.42158 -16.96699
-16.64594 -16.49168 -16.10546 -15.89925 -15.55173 -15.11604 -15.09704 -14.75083
-14.56852 -14.30723 -14.16048 -13.91180 -13.73626 -13.55404 -13.42332 -13.01740
-12.91653 -12.81929 -12.80011 -12.52153 -12.43970 -12.27745 -11.88459 -11.81131
-11.72412 -11.69795 -11.66742 -11.20737 -10.86219 -10.64175 -10.50194 -10.30364
-9.99112 -9.14603 -9.10672 -8.05848 -6.19195 0.34732 0.37357 1.38682
1.41237 1.52367 2.36674 2.44250 2.69665 3.19854 3.24037 3.63764
3.78858 3.91246 3.96094 4.07994 4.09819 4.18963 4.25356 4.30285
4.35287 4.39461 4.43042 4.51918 4.64354 4.66347 4.70284 4.73574
4.76353 4.90718 4.93329 4.95482 5.02628 5.07916 5.11330 5.23550
5.28342 5.31597 5.34867 5.46296 5.53709 5.62664 5.66910 5.73869
5.76429 6.08702 6.20642 6.30339 6.42664 6.46234 6.50713 6.92564
6.94265 7.48719 8.97546
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.018666 B = 0.002579 C = 0.002437
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1499.706256 B =10855.093584 C =11485.139538
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.018 3.982
2 O -0.338 6.338
3 C 0.113 3.887
4 C -0.165 4.165
5 C -0.080 4.080
6 C -0.157 4.157
7 C 0.164 3.836
8 H 0.090 0.910
9 O -0.556 6.556
10 C 0.038 3.962
11 N -0.677 5.677
12 C 0.101 3.899
13 C -0.140 4.140
14 C -0.096 4.096
15 C 0.046 3.954
16 C -0.529 4.529
17 H 0.048 0.952
18 C 0.011 3.989
19 N -0.917 5.917
20 Si 0.948 3.052
21 H -0.269 1.269
22 H -0.281 1.281
23 H -0.282 1.282
24 C -0.098 4.098
25 C -0.097 4.097
26 C -0.071 4.071
27 C -0.206 4.206
28 H 0.065 0.935
29 H 0.117 0.883
30 H 0.065 0.935
31 H 0.135 0.865
32 H 0.135 0.865
33 H 0.383 0.617
34 H 0.087 0.913
35 H 0.031 0.969
36 H 0.339 0.661
37 H 0.085 0.915
38 H 0.051 0.949
39 H 0.049 0.951
40 H 0.053 0.947
41 H 0.030 0.970
42 H -0.012 1.012
43 H 0.258 0.742
44 H 0.035 0.965
45 H 0.051 0.949
46 H 0.054 0.946
47 H 0.071 0.929
48 H 0.148 0.852
49 H 0.152 0.848
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -22.082 -13.071 6.151 26.388
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.076 4.076
2 O -0.252 6.252
3 C 0.068 3.932
4 C -0.184 4.184
5 C -0.098 4.098
6 C -0.158 4.158
7 C 0.104 3.896
8 H 0.107 0.893
9 O -0.363 6.363
10 C -0.092 4.092
11 N -0.309 5.309
12 C -0.009 4.009
13 C -0.179 4.179
14 C -0.135 4.135
15 C 0.028 3.972
16 C -0.568 4.568
17 H 0.066 0.934
18 C -0.187 4.187
19 N -0.557 5.557
20 Si 0.775 3.225
21 H -0.193 1.193
22 H -0.207 1.207
23 H -0.208 1.208
24 C -0.136 4.136
25 C -0.135 4.135
26 C -0.089 4.089
27 C -0.224 4.224
28 H 0.083 0.917
29 H 0.135 0.865
30 H 0.084 0.916
31 H 0.153 0.847
32 H 0.153 0.847
33 H 0.232 0.768
34 H 0.106 0.894
35 H 0.050 0.950
36 H 0.159 0.841
37 H 0.103 0.897
38 H 0.069 0.931
39 H 0.068 0.932
40 H 0.072 0.928
41 H 0.048 0.952
42 H 0.006 0.994
43 H 0.067 0.933
44 H 0.054 0.946
45 H 0.069 0.931
46 H 0.073 0.927
47 H 0.089 0.911
48 H 0.166 0.834
49 H 0.170 0.830
Dipole moment (debyes) X Y Z Total
from point charges -21.858 -12.942 6.552 26.233
hybrid contribution 1.431 -0.473 -0.682 1.654
sum -20.427 -13.415 5.870 25.134
Atomic orbital electron populations
1.23345 0.76403 1.05564 1.02325 1.86050 1.23548 1.26924 1.88665
1.19255 0.92560 0.84909 0.96476 1.20590 0.92052 0.98866 1.06881
1.21008 1.00541 0.91156 0.97099 1.20471 0.94889 0.95501 1.04952
1.20535 0.95310 0.84430 0.89295 0.89256 1.86639 1.29123 1.66580
1.53949 1.22672 0.99594 0.90744 0.96193 1.60699 1.20736 1.27158
1.22337 1.21430 0.96833 0.94441 0.88190 1.22157 0.96789 0.99294
0.99633 1.21336 0.95584 0.98836 0.97727 1.18621 0.92320 0.92568
0.93691 1.21674 0.93089 1.33129 1.08879 0.93369 1.25710 1.02167
0.95175 0.95617 1.70026 1.27613 1.37449 1.20633 0.85650 0.80214
0.77878 0.78789 1.19309 1.20665 1.20808 1.21417 0.94568 0.98551
0.99022 1.21469 0.97105 0.95147 0.99793 1.20954 0.93432 0.98241
0.96272 1.21453 1.01198 0.91640 1.08149 0.91651 0.86456 0.91613
0.84683 0.84749 0.76805 0.89449 0.95045 0.84059 0.89718 0.93059
0.93197 0.92821 0.95156 0.99377 0.93266 0.94614 0.93053 0.92739
0.91061 0.83425 0.83019
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.16 9.81 113.37 1.11 1.28 16
2 O -0.34 -6.16 10.50 -92.48 -0.97 -7.13 16
3 C 0.11 2.23 6.69 22.51 0.15 2.38 16
4 C -0.17 -3.45 9.99 22.36 0.22 -3.22 16
5 C -0.08 -1.69 9.66 22.25 0.21 -1.48 16
6 C -0.16 -3.22 4.97 -19.85 -0.10 -3.32 16
7 C 0.16 3.74 3.38 29.85 0.10 3.84 16
8 H 0.09 2.30 8.00 -2.39 -0.02 2.28 16
9 O -0.56 -12.99 13.13 -148.98 -1.96 -14.94 16
10 C 0.04 0.89 5.10 86.30 0.44 1.33 16
11 N -0.68 -20.19 5.71 -491.56 -2.81 -23.00 16
12 C 0.10 3.15 2.86 44.91 0.13 3.28 16
13 C -0.14 -5.16 5.52 30.60 0.17 -4.99 16
14 C -0.10 -4.48 4.73 30.60 0.14 -4.34 16
15 C 0.05 2.34 2.10 -11.54 -0.02 2.31 16
16 C -0.53 -29.72 8.56 25.60 0.22 -29.51 16
17 H 0.05 2.70 7.74 -2.91 -0.02 2.67 16
18 C 0.01 0.64 5.30 84.65 0.45 1.09 16
19 N -0.92 -53.66 11.32 21.45 0.24 -53.42 16
20 Si 0.95 44.53 29.54 68.60 2.03 46.56 16
21 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16
22 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16
23 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16
24 C -0.10 -4.10 4.90 30.60 0.15 -3.95 16
25 C -0.10 -3.29 5.64 30.60 0.17 -3.11 16
26 C -0.07 -1.19 9.32 22.26 0.21 -0.98 16
27 C -0.21 -3.33 9.04 22.37 0.20 -3.13 16
28 H 0.06 0.48 7.66 -2.39 -0.02 0.46 16
29 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16
30 H 0.07 0.47 7.66 -2.39 -0.02 0.45 16
31 H 0.14 2.54 8.06 -2.91 -0.02 2.52 16
32 H 0.13 2.63 8.03 -2.91 -0.02 2.61 16
33 H 0.38 5.95 7.49 -74.06 -0.55 5.40 16
34 H 0.09 1.77 8.06 -2.39 -0.02 1.75 16
35 H 0.03 0.80 7.43 -2.39 -0.02 0.78 16
36 H 0.34 11.72 5.56 -89.70 -0.50 11.23 16
37 H 0.08 2.27 7.80 -2.39 -0.02 2.25 16
38 H 0.05 1.75 7.45 -2.39 -0.02 1.73 16
39 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16
40 H 0.05 2.89 6.07 -2.38 -0.01 2.88 16
41 H 0.03 1.38 6.26 -2.39 -0.01 1.36 16
42 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16
43 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16
44 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16
45 H 0.05 2.17 7.21 -2.39 -0.02 2.16 16
46 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16
47 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16
48 H 0.15 1.65 6.77 -2.91 -0.02 1.63 16
49 H 0.15 1.61 6.30 -2.91 -0.02 1.59 16
Total: -1.00 -66.35 379.81 0.39 -65.96
By element:
Atomic # 1 Polarization: 28.60 SS G_CDS: -0.10 Total: 28.50 kcal
Atomic # 6 Polarization: -46.48 SS G_CDS: 3.96 Total: -42.52 kcal
Atomic # 7 Polarization: -73.86 SS G_CDS: -2.57 Total: -76.42 kcal
Atomic # 8 Polarization: -19.15 SS G_CDS: -2.93 Total: -22.08 kcal
Atomic # 14 Polarization: 44.53 SS G_CDS: 2.03 Total: 46.56 kcal
Total: -66.35 0.39 -65.96 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001173329769.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -31.921 kcal
(2) G-P(sol) polarization free energy of solvation -66.352 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.273 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.390 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.962 kcal
(6) G-S(sol) free energy of system = (1) + (5) -97.883 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.74 seconds