Wall clock time and date at job start Tue Mar 31 2020 12:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46559 * 2 1 4 4 C 1.46505 * 119.99862 * 269.99736 * 3 2 1 5 5 C 1.52998 * 109.46822 * 275.29196 * 4 3 2 6 6 C 1.34777 * 119.99903 * 90.00092 * 3 2 1 7 7 O 1.21279 * 120.00087 * 5.47157 * 6 3 2 8 8 C 1.50700 * 119.99646 * 185.46182 * 6 3 2 9 9 H 1.08990 * 109.47660 * 320.33083 * 8 6 3 10 10 O 1.42899 * 109.46965 * 200.32580 * 8 6 3 11 11 C 1.42895 * 113.99861 * 150.00873 * 10 8 6 12 12 C 1.53001 * 109.47010 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.47079 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47009 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99860 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99992 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99999 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47325 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47338 * 119.99624 * 18 16 14 21 21 H 1.48509 * 109.47026 * 239.99398 * 18 16 14 22 22 C 1.50707 * 109.46617 * 80.32953 * 8 6 3 23 23 C 1.38229 * 119.99978 * 254.09323 * 22 8 6 24 24 C 1.38230 * 120.00386 * 180.02562 * 23 22 8 25 25 C 1.38238 * 119.99814 * 359.95707 * 24 23 22 26 26 C 1.38238 * 119.99793 * 359.97438 * 25 24 23 27 27 C 1.38231 * 119.99972 * 74.07507 * 22 8 6 28 28 H 1.09002 * 109.46779 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47251 * 299.99839 * 1 2 3 30 30 H 1.08998 * 109.47458 * 60.00701 * 1 2 3 31 31 H 1.09000 * 109.47251 * 240.00161 * 2 1 3 32 32 H 1.08999 * 109.47058 * 119.99661 * 2 1 3 33 33 H 1.09002 * 109.46627 * 35.28835 * 4 3 2 34 34 H 1.08999 * 109.46820 * 155.29115 * 4 3 2 35 35 H 1.09006 * 109.46925 * 179.97438 * 5 4 3 36 36 H 1.08995 * 109.47106 * 299.99618 * 5 4 3 37 37 H 1.08999 * 109.47489 * 60.00329 * 5 4 3 38 38 H 1.08997 * 109.46869 * 299.99557 * 11 10 8 39 39 H 1.09001 * 109.47616 * 59.99770 * 11 10 8 40 40 H 1.09005 * 109.46978 * 299.99437 * 12 11 10 41 41 H 1.08999 * 109.47675 * 59.99746 * 12 11 10 42 42 H 1.08997 * 109.47080 * 299.99434 * 13 12 11 43 43 H 1.08999 * 109.46829 * 59.99529 * 13 12 11 44 44 H 0.97002 * 120.00115 * 179.97438 * 17 16 14 45 45 H 1.08005 * 120.00040 * 359.97438 * 23 22 8 46 46 H 1.08000 * 120.00505 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.00285 * 179.71872 * 25 24 23 48 48 H 1.07999 * 119.99842 * 179.97438 * 26 25 24 49 49 H 1.08007 * 120.00271 * 359.97438 * 27 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6633 1.7250 -1.7769 6 6 2.2428 2.0166 1.1672 7 8 2.1366 1.4154 2.2151 8 6 2.6262 3.4741 1.1701 9 1 3.3162 3.6699 0.3495 10 8 3.2570 3.7982 2.4107 11 6 4.2229 4.8468 2.3150 12 6 4.8310 5.1075 3.6946 13 6 5.8658 6.2299 3.5920 14 6 6.4643 6.4870 4.9509 15 1 6.1389 5.9082 5.8027 16 6 7.4266 7.4620 5.1071 17 7 7.8225 8.1673 4.0700 18 14 8.1690 7.7803 6.7914 19 1 7.5583 6.8597 7.7836 20 1 9.6349 7.5493 6.7380 21 1 7.9036 9.1856 7.1918 22 6 1.3899 4.3189 0.9993 23 6 1.1418 4.9446 -0.2080 24 6 0.0081 5.7199 -0.3645 25 6 -0.8779 5.8689 0.6861 26 6 -0.6304 5.2420 1.8930 27 6 0.5040 4.4678 2.0499 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5211 1.7560 -2.0028 34 1 2.1873 3.1486 -1.1166 35 1 3.8448 2.2385 -2.7211 36 1 4.4045 2.0408 -1.0428 37 1 3.7383 0.6483 -1.9290 38 1 5.0104 4.5532 1.6209 39 1 3.7395 5.7543 1.9533 40 1 4.0438 5.4010 4.3891 41 1 5.3146 4.1999 4.0560 42 1 6.6530 5.9360 2.8977 43 1 5.3826 7.1375 3.2305 44 1 8.4992 8.8535 4.1800 45 1 1.8340 4.8284 -1.0288 46 1 -0.1856 6.2092 -1.3077 47 1 -1.7612 6.4783 0.5653 48 1 -1.3224 5.3587 2.7140 49 1 0.6975 3.9783 2.9931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205663209.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:32 Heat of formation + Delta-G solvation = -66.674522 kcal Electronic energy + Delta-G solvation = -27356.991855 eV Core-core repulsion = 23669.869432 eV Total energy + Delta-G solvation = -3687.122423 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.69455 -38.97006 -37.49361 -36.27134 -33.98939 -32.81685 -31.91788 -31.17768 -30.95990 -29.79874 -27.46000 -26.16381 -23.95398 -23.36655 -23.07525 -22.54985 -21.55406 -20.28392 -19.08417 -17.71294 -17.17879 -16.72252 -16.32932 -15.95035 -15.74105 -15.26854 -14.81931 -14.57252 -14.36140 -14.27051 -14.14265 -13.89064 -13.62684 -13.46189 -12.92069 -12.89283 -12.72678 -12.58304 -12.30623 -12.18268 -12.04339 -11.88412 -11.54668 -11.50793 -11.26255 -11.23558 -11.03754 -10.87097 -10.54500 -10.40594 -10.05742 -9.77064 -9.45001 -9.28193 -9.08126 -9.01403 -8.90389 -8.81198 -8.33810 -5.99071 -4.00778 1.14600 1.31211 2.52652 2.61529 3.33352 3.40562 3.46110 3.63932 3.87542 4.43529 4.49164 4.53898 4.60212 4.74610 4.80428 4.86301 4.91360 4.96470 5.02988 5.09475 5.13191 5.17967 5.33815 5.36918 5.37224 5.44309 5.52577 5.53438 5.69935 5.71119 5.79627 5.80570 5.86663 5.94712 5.95448 6.18417 6.29770 6.33407 6.41398 6.44842 6.70437 6.71398 6.87002 7.11289 7.12326 7.45778 7.68221 7.80340 8.00802 8.09392 8.43984 9.06009 9.63240 11.12551 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.003020 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.539055 B = 9270.491130 C =10111.245412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.613 5.613 4 C 0.092 3.908 5 C -0.175 4.175 6 C 0.526 3.474 7 O -0.511 6.511 8 C 0.114 3.886 9 H 0.086 0.914 10 O -0.352 6.352 11 C 0.060 3.940 12 C -0.106 4.106 13 C 0.025 3.975 14 C -0.517 4.517 15 H 0.057 0.943 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.284 1.284 22 C -0.109 4.109 23 C -0.112 4.112 24 C -0.123 4.123 25 C -0.115 4.115 26 C -0.121 4.121 27 C -0.080 4.080 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.060 0.940 38 H 0.045 0.955 39 H 0.047 0.953 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.017 0.983 43 H 0.017 0.983 44 H 0.260 0.740 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.124 0.876 49 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.691 -11.880 -16.836 27.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.011 4.011 3 N -0.349 5.349 4 C -0.031 4.031 5 C -0.233 4.233 6 C 0.312 3.688 7 O -0.384 6.384 8 C 0.052 3.948 9 H 0.104 0.896 10 O -0.271 6.271 11 C -0.016 4.016 12 C -0.144 4.144 13 C -0.012 4.012 14 C -0.556 4.556 15 H 0.076 0.924 16 C -0.145 4.145 17 N -0.536 5.536 18 Si 0.721 3.279 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.110 4.110 23 C -0.130 4.130 24 C -0.141 4.141 25 C -0.133 4.133 26 C -0.139 4.139 27 C -0.098 4.098 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.103 0.897 33 H 0.097 0.903 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.035 0.965 44 H 0.069 0.931 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.139 0.861 48 H 0.142 0.858 49 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.658 -12.167 -16.109 26.820 hybrid contribution 0.577 0.530 0.456 0.907 sum -17.080 -11.637 -15.653 25.926 Atomic orbital electron populations 1.22127 0.95917 1.02093 1.02363 1.21396 0.94268 0.82161 1.03243 1.47921 1.66932 1.14289 1.05719 1.21853 0.97389 0.98360 0.85462 1.22246 0.96882 1.02476 1.01743 1.20296 0.76826 0.88116 0.83514 1.90704 1.49482 1.67164 1.31044 1.20654 0.92865 0.90770 0.90507 0.89615 1.88089 1.56138 1.55960 1.26869 1.22968 0.89268 0.88396 1.00934 1.21652 0.99085 1.00912 0.92729 1.19045 0.92624 0.92084 0.97485 1.21262 1.21255 1.18484 0.94555 0.92431 1.25022 0.96716 0.95989 0.96791 1.69976 1.31082 1.23057 1.29517 0.86516 0.78943 0.78037 0.84419 1.19642 1.21010 1.21017 1.20035 0.96555 0.99564 0.94852 1.21027 0.97875 0.97570 0.96481 1.21061 0.94695 0.99173 0.99142 1.21198 0.99393 0.99267 0.93426 1.21203 0.97532 0.97534 0.97633 1.21106 0.92860 0.97023 0.98856 0.91621 0.92222 0.92656 0.90583 0.89674 0.90252 0.89550 0.91139 0.92051 0.92111 0.93634 0.93450 0.92423 0.92412 0.96490 0.96471 0.93076 0.85834 0.85878 0.86063 0.85843 0.85147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.38 10.24 37.16 0.38 -1.00 16 2 C 0.11 1.02 6.19 -4.04 -0.03 1.00 16 3 N -0.61 -6.55 2.47 -173.68 -0.43 -6.98 16 4 C 0.09 0.70 5.82 -4.04 -0.02 0.68 16 5 C -0.18 -1.22 10.23 37.16 0.38 -0.84 16 6 C 0.53 7.72 6.83 -10.99 -0.07 7.64 16 7 O -0.51 -9.50 16.17 -13.48 -0.22 -9.71 16 8 C 0.11 1.64 1.99 -29.03 -0.06 1.58 16 9 H 0.09 1.05 6.31 -51.93 -0.33 0.72 16 10 O -0.35 -6.46 9.15 -54.27 -0.50 -6.96 16 11 C 0.06 1.12 5.74 37.16 0.21 1.34 16 12 C -0.11 -2.36 5.52 -26.73 -0.15 -2.51 16 13 C 0.02 0.65 4.97 -27.88 -0.14 0.51 16 14 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 15 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 18 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.92 7.11 56.52 0.40 -6.51 16 21 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 22 C -0.11 -1.43 4.78 -104.62 -0.50 -1.93 16 23 C -0.11 -1.17 8.58 -39.59 -0.34 -1.51 16 24 C -0.12 -1.18 10.05 -39.58 -0.40 -1.58 16 25 C -0.11 -1.15 10.05 -39.58 -0.40 -1.55 16 26 C -0.12 -1.39 10.05 -39.58 -0.40 -1.79 16 27 C -0.08 -1.11 9.30 -39.59 -0.37 -1.48 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.08 0.50 8.07 -51.93 -0.42 0.09 16 32 H 0.08 0.93 7.35 -51.93 -0.38 0.55 16 33 H 0.08 0.45 8.11 -51.93 -0.42 0.03 16 34 H 0.09 0.65 2.94 -51.93 -0.15 0.50 16 35 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.05 0.80 8.08 -51.93 -0.42 0.38 16 39 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.12 0.99 6.40 -52.48 -0.34 0.65 16 46 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 47 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 48 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 49 H 0.13 2.00 7.95 -52.48 -0.42 1.58 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -34.48 401.85 -10.01 -44.49 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -8.34 Total: -2.22 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.31 Total: -15.27 kcal Atomic # 7 Polarization: -33.74 SS G_CDS: 0.31 Total: -33.43 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.71 Total: -16.67 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.48 -10.01 -44.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663209.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.183 kcal (2) G-P(sol) polarization free energy of solvation -34.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds