Wall clock time and date at job start Tue Mar 31 2020 12:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46503 * 109.46559 * 2 1 4 4 C 1.46505 * 119.99862 * 269.99736 * 3 2 1 5 5 C 1.52998 * 109.46822 * 275.29196 * 4 3 2 6 6 C 1.34777 * 119.99903 * 90.00092 * 3 2 1 7 7 O 1.21279 * 120.00087 * 5.47157 * 6 3 2 8 8 C 1.50700 * 119.99646 * 185.46182 * 6 3 2 9 9 H 1.08990 * 109.47660 * 320.33083 * 8 6 3 10 10 O 1.42899 * 109.46965 * 200.32580 * 8 6 3 11 11 C 1.42895 * 113.99861 * 150.00873 * 10 8 6 12 12 C 1.53001 * 109.47010 * 180.02562 * 11 10 8 13 13 C 1.53006 * 109.47079 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47009 * 179.97438 * 13 12 11 15 15 H 1.07998 * 120.00423 * 359.97438 * 14 13 12 16 16 C 1.37876 * 119.99860 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99992 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 119.99999 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47325 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47338 * 119.99624 * 18 16 14 21 21 H 1.48509 * 109.47026 * 239.99398 * 18 16 14 22 22 C 1.50707 * 109.46617 * 80.32953 * 8 6 3 23 23 C 1.38229 * 119.99978 * 254.09323 * 22 8 6 24 24 C 1.38230 * 120.00386 * 180.02562 * 23 22 8 25 25 C 1.38238 * 119.99814 * 359.95707 * 24 23 22 26 26 C 1.38238 * 119.99793 * 359.97438 * 25 24 23 27 27 C 1.38231 * 119.99972 * 74.07507 * 22 8 6 28 28 H 1.09002 * 109.46779 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47251 * 299.99839 * 1 2 3 30 30 H 1.08998 * 109.47458 * 60.00701 * 1 2 3 31 31 H 1.09000 * 109.47251 * 240.00161 * 2 1 3 32 32 H 1.08999 * 109.47058 * 119.99661 * 2 1 3 33 33 H 1.09002 * 109.46627 * 35.28835 * 4 3 2 34 34 H 1.08999 * 109.46820 * 155.29115 * 4 3 2 35 35 H 1.09006 * 109.46925 * 179.97438 * 5 4 3 36 36 H 1.08995 * 109.47106 * 299.99618 * 5 4 3 37 37 H 1.08999 * 109.47489 * 60.00329 * 5 4 3 38 38 H 1.08997 * 109.46869 * 299.99557 * 11 10 8 39 39 H 1.09001 * 109.47616 * 59.99770 * 11 10 8 40 40 H 1.09005 * 109.46978 * 299.99437 * 12 11 10 41 41 H 1.08999 * 109.47675 * 59.99746 * 12 11 10 42 42 H 1.08997 * 109.47080 * 299.99434 * 13 12 11 43 43 H 1.08999 * 109.46829 * 59.99529 * 13 12 11 44 44 H 0.97002 * 120.00115 * 179.97438 * 17 16 14 45 45 H 1.08005 * 120.00040 * 359.97438 * 23 22 8 46 46 H 1.08000 * 120.00505 * 179.97438 * 24 23 22 47 47 H 1.07997 * 120.00285 * 179.71872 * 25 24 23 48 48 H 1.07999 * 119.99842 * 179.97438 * 26 25 24 49 49 H 1.08007 * 120.00271 * 359.97438 * 27 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 3.6633 1.7250 -1.7769 6 6 2.2428 2.0166 1.1672 7 8 2.1366 1.4154 2.2151 8 6 2.6262 3.4741 1.1701 9 1 3.3162 3.6699 0.3495 10 8 3.2570 3.7982 2.4107 11 6 4.2229 4.8468 2.3150 12 6 4.8310 5.1075 3.6946 13 6 5.8658 6.2299 3.5920 14 6 6.4643 6.4870 4.9509 15 1 6.1389 5.9082 5.8027 16 6 7.4266 7.4620 5.1071 17 7 7.8225 8.1673 4.0700 18 14 8.1690 7.7803 6.7914 19 1 7.5583 6.8597 7.7836 20 1 9.6349 7.5493 6.7380 21 1 7.9036 9.1856 7.1918 22 6 1.3899 4.3189 0.9993 23 6 1.1418 4.9446 -0.2080 24 6 0.0081 5.7199 -0.3645 25 6 -0.8779 5.8689 0.6861 26 6 -0.6304 5.2420 1.8930 27 6 0.5040 4.4678 2.0499 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.5211 1.7560 -2.0028 34 1 2.1873 3.1486 -1.1166 35 1 3.8448 2.2385 -2.7211 36 1 4.4045 2.0408 -1.0428 37 1 3.7383 0.6483 -1.9290 38 1 5.0104 4.5532 1.6209 39 1 3.7395 5.7543 1.9533 40 1 4.0438 5.4010 4.3891 41 1 5.3146 4.1999 4.0560 42 1 6.6530 5.9360 2.8977 43 1 5.3826 7.1375 3.2305 44 1 8.4992 8.8535 4.1800 45 1 1.8340 4.8284 -1.0288 46 1 -0.1856 6.2092 -1.3077 47 1 -1.7612 6.4783 0.5653 48 1 -1.3224 5.3587 2.7140 49 1 0.6975 3.9783 2.9931 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205663209.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:31 Heat of formation + Delta-G solvation = -85.128355 kcal Electronic energy + Delta-G solvation = -27357.792073 eV Core-core repulsion = 23669.869432 eV Total energy + Delta-G solvation = -3687.922641 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.72314 -39.89105 -38.77410 -37.28345 -35.95018 -34.03812 -33.21678 -32.41200 -31.83638 -30.58701 -28.97905 -27.63587 -24.96827 -24.56324 -24.21379 -23.47754 -22.46655 -22.15008 -20.06377 -18.80168 -18.46272 -18.09704 -17.79133 -16.93235 -16.92234 -16.49888 -16.35553 -15.97379 -15.54770 -15.25771 -14.93871 -14.80106 -14.68318 -14.37064 -14.24771 -14.03290 -13.88261 -13.60827 -13.52424 -13.50782 -13.18699 -12.96231 -12.84648 -12.61193 -12.49079 -12.36722 -12.20017 -12.04098 -11.97072 -11.91343 -11.69734 -11.55840 -11.23301 -11.09351 -10.62050 -10.57793 -9.87423 -9.77902 -9.73453 -8.22987 -6.33562 0.27088 0.45260 1.39074 1.39107 1.43506 1.53195 1.66820 2.39239 2.68408 2.85380 3.10217 3.45491 3.61151 3.75446 3.94119 4.06854 4.10200 4.10720 4.15898 4.18608 4.25282 4.27983 4.40968 4.47228 4.51977 4.52791 4.58368 4.65679 4.71529 4.83443 4.85713 4.88085 4.94992 4.98548 4.99958 5.10361 5.11333 5.23755 5.34150 5.45086 5.48098 5.54221 5.57036 5.57777 5.66397 5.79962 6.00284 6.04303 6.21911 6.29939 6.80957 7.04597 7.35281 8.89182 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.013592 B = 0.003020 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.539055 B = 9270.491130 C =10111.245412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.106 3.894 3 N -0.603 5.603 4 C 0.086 3.914 5 C -0.173 4.173 6 C 0.520 3.480 7 O -0.567 6.567 8 C 0.111 3.889 9 H 0.109 0.891 10 O -0.379 6.379 11 C 0.074 3.926 12 C -0.096 4.096 13 C 0.033 3.967 14 C -0.547 4.547 15 H 0.055 0.945 16 C 0.003 3.997 17 N -0.929 5.929 18 Si 0.965 3.035 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.275 1.275 22 C -0.125 4.125 23 C -0.110 4.110 24 C -0.117 4.117 25 C -0.113 4.113 26 C -0.131 4.131 27 C -0.111 4.111 28 H 0.083 0.917 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.039 0.961 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.053 0.947 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.001 0.999 43 H 0.000 1.000 44 H 0.265 0.735 45 H 0.153 0.847 46 H 0.159 0.841 47 H 0.150 0.850 48 H 0.133 0.867 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.543 -11.419 -19.461 29.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.016 4.016 3 N -0.336 5.336 4 C -0.036 4.036 5 C -0.231 4.231 6 C 0.307 3.693 7 O -0.445 6.445 8 C 0.050 3.950 9 H 0.126 0.874 10 O -0.297 6.297 11 C -0.002 4.002 12 C -0.134 4.134 13 C -0.004 4.004 14 C -0.585 4.585 15 H 0.073 0.927 16 C -0.195 4.195 17 N -0.569 5.569 18 Si 0.789 3.211 19 H -0.191 1.191 20 H -0.200 1.200 21 H -0.200 1.200 22 C -0.126 4.126 23 C -0.127 4.127 24 C -0.135 4.135 25 C -0.131 4.131 26 C -0.149 4.149 27 C -0.129 4.129 28 H 0.102 0.898 29 H 0.046 0.954 30 H 0.090 0.910 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.106 0.894 35 H 0.112 0.888 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.068 0.932 41 H 0.068 0.932 42 H 0.019 0.981 43 H 0.018 0.982 44 H 0.074 0.926 45 H 0.170 0.830 46 H 0.176 0.824 47 H 0.168 0.832 48 H 0.151 0.849 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -18.523 -11.717 -18.792 28.871 hybrid contribution 0.771 0.362 1.165 1.443 sum -17.752 -11.355 -17.627 27.473 Atomic orbital electron populations 1.22065 0.95019 1.03094 1.01538 1.21583 0.94989 0.81356 1.03649 1.48045 1.65163 1.14738 1.05695 1.22159 0.98769 0.98330 0.84314 1.22236 0.95615 1.03090 1.02135 1.20493 0.76545 0.88263 0.83983 1.90670 1.52414 1.68208 1.33200 1.20871 0.93776 0.91047 0.89298 0.87369 1.88029 1.56281 1.55653 1.29762 1.22633 0.89842 0.89139 0.98548 1.21394 0.97906 0.98984 0.95107 1.18883 0.92880 0.92590 0.96094 1.21650 1.22143 1.19108 0.95549 0.92701 1.25932 0.96967 0.95502 1.01091 1.70079 1.31568 1.23486 1.31775 0.85398 0.78217 0.78205 0.79235 1.19088 1.20008 1.20012 1.19994 0.95997 1.00566 0.96013 1.21348 0.98773 0.96662 0.95960 1.21518 0.93632 0.98056 1.00292 1.21585 1.00370 0.98562 0.92578 1.21389 0.96958 0.97446 0.99127 1.21028 0.94829 0.98818 0.98261 0.89785 0.95376 0.90965 0.87096 0.92274 0.87196 0.89378 0.88774 0.94227 0.91644 0.92388 0.92848 0.93236 0.93205 0.98075 0.98206 0.92567 0.82957 0.82352 0.83182 0.84870 0.88484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 10.24 71.98 0.74 -1.73 16 2 C 0.11 1.85 6.19 86.38 0.53 2.39 16 3 N -0.60 -12.46 2.47 -821.79 -2.03 -14.49 16 4 C 0.09 1.06 5.82 86.38 0.50 1.56 16 5 C -0.17 -1.95 10.23 71.98 0.74 -1.21 16 6 C 0.52 15.88 6.83 87.66 0.60 16.48 16 7 O -0.57 -22.79 16.17 15.18 0.25 -22.55 16 8 C 0.11 3.26 1.99 29.10 0.06 3.32 16 9 H 0.11 2.57 6.31 -2.39 -0.02 2.55 16 10 O -0.38 -14.58 9.15 -130.78 -1.20 -15.78 16 11 C 0.07 2.86 5.74 71.98 0.41 3.27 16 12 C -0.10 -4.47 5.52 30.60 0.17 -4.30 16 13 C 0.03 1.79 4.97 29.85 0.15 1.94 16 14 C -0.55 -32.51 9.11 25.60 0.23 -32.28 16 15 H 0.05 3.21 7.74 -2.91 -0.02 3.19 16 16 C 0.00 0.19 5.46 84.65 0.46 0.65 16 17 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 18 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 22 C -0.12 -3.27 4.78 -19.87 -0.09 -3.36 16 23 C -0.11 -2.03 8.58 22.27 0.19 -1.84 16 24 C -0.12 -1.84 10.05 22.27 0.22 -1.61 16 25 C -0.11 -1.98 10.05 22.27 0.22 -1.76 16 26 C -0.13 -3.01 10.05 22.27 0.22 -2.79 16 27 C -0.11 -3.24 9.30 22.27 0.21 -3.03 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.11 1.17 8.07 -2.39 -0.02 1.16 16 32 H 0.06 1.36 7.35 -2.39 -0.02 1.35 16 33 H 0.11 0.76 8.11 -2.39 -0.02 0.74 16 34 H 0.09 1.07 2.94 -2.39 -0.01 1.06 16 35 H 0.09 0.65 8.14 -2.38 -0.02 0.63 16 36 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.06 2.05 8.08 -2.39 -0.02 2.03 16 39 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.05 2.33 8.14 -2.38 -0.02 2.32 16 41 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 42 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 43 H 0.00 -0.03 8.14 -2.39 -0.02 -0.04 16 44 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 45 H 0.15 1.84 6.40 -2.91 -0.02 1.82 16 46 H 0.16 1.39 8.06 -2.91 -0.02 1.36 16 47 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 48 H 0.13 2.62 8.06 -2.91 -0.02 2.59 16 49 H 0.10 3.37 7.95 -2.91 -0.02 3.35 16 Total: -1.00 -78.91 401.85 5.80 -73.11 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: 0.90 Total: 13.10 kcal Atomic # 6 Polarization: -29.89 SS G_CDS: 5.57 Total: -24.33 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -1.75 Total: -71.04 kcal Atomic # 8 Polarization: -37.38 SS G_CDS: -0.95 Total: -38.33 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -78.91 5.80 -73.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205663209.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.021 kcal (2) G-P(sol) polarization free energy of solvation -78.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds