Wall clock time and date at job start Tue Mar 31 2020 13:45:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.45195 * 109.47107 * 2 1
4 4 C 1.34226 * 117.00157 * 179.97438 * 3 2 1
5 5 O 1.20825 * 119.99811 * 0.02562 * 4 3 2
6 6 C 1.50699 * 120.00324 * 180.02562 * 4 3 2
7 7 N 1.46903 * 109.47320 * 180.02562 * 6 4 3
8 8 C 1.46900 * 111.00178 * 66.04398 * 7 6 4
9 9 C 1.50700 * 109.47052 * 199.84392 * 8 7 6
10 10 H 1.07992 * 119.99951 * 355.06411 * 9 8 7
11 11 C 1.37872 * 119.99816 * 175.06019 * 9 8 7
12 12 N 1.31513 * 120.00131 * 0.02562 * 11 9 8
13 13 Si 1.86803 * 120.00130 * 180.02562 * 11 9 8
14 14 H 1.48497 * 109.47243 * 89.99785 * 13 11 9
15 15 H 1.48499 * 109.47152 * 210.00389 * 13 11 9
16 16 H 1.48498 * 109.46779 * 330.00000 * 13 11 9
17 17 C 1.46900 * 110.99739 * 190.00194 * 7 6 4
18 18 C 1.52994 * 109.47176 * 75.67679 * 17 7 6
19 19 C 1.53003 * 109.47194 * 174.87787 * 18 17 7
20 20 C 1.52998 * 109.47548 * 180.02562 * 19 18 17
21 21 C 1.50693 * 109.47642 * 180.02562 * 20 19 18
22 22 C 1.38238 * 120.00286 * 89.99468 * 21 20 19
23 23 C 1.38232 * 119.99669 * 179.97438 * 22 21 20
24 24 C 1.38234 * 120.00619 * 359.97438 * 23 22 21
25 25 C 1.38237 * 119.99890 * 0.27303 * 24 23 22
26 26 C 1.38238 * 119.99875 * 269.98078 * 21 20 19
27 27 H 1.08999 * 109.47338 * 299.99399 * 1 2 3
28 28 H 1.09000 * 109.47305 * 59.99770 * 1 2 3
29 29 H 1.09000 * 109.47490 * 179.97438 * 1 2 3
30 30 H 1.09003 * 109.46993 * 240.00238 * 2 1 3
31 31 H 1.09001 * 109.47012 * 120.00690 * 2 1 3
32 32 H 1.09000 * 109.46991 * 60.00616 * 6 4 3
33 33 H 1.09003 * 109.47329 * 300.00744 * 6 4 3
34 34 H 1.09000 * 109.46821 * 319.84776 * 8 7 6
35 35 H 1.09000 * 109.46765 * 79.84639 * 8 7 6
36 36 H 0.97001 * 120.00322 * 180.02562 * 12 11 9
37 37 H 1.08997 * 109.47199 * 315.67458 * 17 7 6
38 38 H 1.09006 * 109.46714 * 195.67561 * 17 7 6
39 39 H 1.08999 * 109.47465 * 54.88196 * 18 17 7
40 40 H 1.08993 * 109.47481 * 294.87778 * 18 17 7
41 41 H 1.09003 * 109.47078 * 59.99859 * 19 18 17
42 42 H 1.09005 * 109.47219 * 300.00152 * 19 18 17
43 43 H 1.09003 * 109.47051 * 59.99836 * 20 19 18
44 44 H 1.09005 * 109.46980 * 300.00292 * 20 19 18
45 45 H 1.07994 * 119.99609 * 359.97438 * 22 21 20
46 46 H 1.08003 * 119.99791 * 179.97438 * 23 22 21
47 47 H 1.07997 * 120.00151 * 180.02562 * 24 23 22
48 48 H 1.07999 * 120.00205 * 179.72771 * 25 24 23
49 49 H 1.08007 * 119.99856 * 359.97438 * 26 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5866 0.0005
6 6 3.9207 2.9374 0.0012
7 7 5.3877 2.8605 0.0010
8 6 5.8843 2.2775 -1.2525
9 6 7.2872 1.7666 -1.0478
10 1 7.7917 1.9358 -0.1081
11 6 7.9264 1.0830 -2.0602
12 7 7.3121 0.8773 -3.2048
13 14 9.6652 0.4491 -1.8064
14 1 9.6141 -0.9257 -1.2474
15 1 10.3794 0.4281 -3.1081
16 1 10.3842 1.3411 -0.8616
17 6 5.9841 4.1816 0.2398
18 6 5.8524 4.5404 1.7213
19 6 6.5846 5.8558 1.9945
20 6 6.4535 6.2143 3.4761
21 6 7.1741 7.5101 3.7451
22 6 6.5004 8.7120 3.6326
23 6 7.1614 9.9006 3.8799
24 6 8.4959 9.8874 4.2403
25 6 9.1709 8.6859 4.3479
26 6 8.5088 7.4970 4.1048
27 1 -0.3634 0.5137 0.8900
28 1 -0.3634 0.5139 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5139 0.8899
32 1 3.5845 3.4692 0.8912
33 1 3.5850 3.4699 -0.8887
34 1 5.2371 1.4527 -1.5510
35 1 5.8851 3.0392 -2.0322
36 1 7.7617 0.3961 -3.9169
37 1 5.4662 4.9282 -0.3623
38 1 7.0383 4.1596 -0.0364
39 1 6.2909 3.7478 2.3275
40 1 4.7984 4.6516 1.9759
41 1 6.1460 6.6484 1.3883
42 1 7.6386 5.7446 1.7399
43 1 6.8923 5.4215 4.0820
44 1 5.3995 6.3253 3.7312
45 1 5.4578 8.7222 3.3514
46 1 6.6352 10.8396 3.7916
47 1 9.0121 10.8160 4.4339
48 1 10.2147 8.6758 4.6252
49 1 9.0350 6.5579 4.1934
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001207615020.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:45:03
Heat of formation + Delta-G solvation = -74.259819 kcal
Electronic energy + Delta-G solvation = -26046.513769 eV
Core-core repulsion = 22359.062423 eV
Total energy + Delta-G solvation = -3687.451346 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-39.95182 -39.40514 -37.28884 -35.89583 -34.72873 -32.55540 -31.68765 -31.31179
-30.99524 -28.38678 -27.86039 -25.44137 -23.45646 -22.96429 -22.67811 -21.48373
-20.94774 -20.66721 -19.65722 -17.21664 -16.85195 -16.57361 -16.11052 -15.87749
-15.54461 -15.29576 -14.72406 -14.60149 -14.22918 -13.97770 -13.72460 -13.55735
-13.40132 -13.13685 -13.03589 -12.76902 -12.40652 -12.24978 -12.01755 -11.94791
-11.81894 -11.54712 -11.39151 -11.25744 -11.14274 -10.93455 -10.78752 -10.72409
-10.59791 -10.40265 -10.17280 -10.09266 -9.90073 -9.49785 -9.14553 -9.03534
-8.75458 -8.31284 -7.34887 -5.92811 -3.91824 1.25453 1.28638 2.86240
3.01561 3.38747 3.44101 3.47250 3.67396 4.48374 4.64026 4.73153
4.84992 4.91957 5.01572 5.03644 5.06167 5.12167 5.21813 5.28054
5.40142 5.41352 5.41902 5.43829 5.54265 5.56873 5.68613 5.73553
5.82238 5.85334 5.89591 5.93503 5.96165 6.00017 6.00399 6.06552
6.20290 6.35180 6.38820 6.39327 6.55715 6.66011 6.74089 6.87953
6.90730 7.23064 7.30770 7.85194 8.14421 8.19246 8.40581 8.59808
9.13165 9.70202 11.18696
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.008346 B = 0.003063 C = 0.002329
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3354.272814 B = 9139.017850 C =12018.092129
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.062 3.938
3 O -0.372 6.372
4 C 0.451 3.549
5 O -0.463 6.463
6 C 0.066 3.934
7 N -0.524 5.524
8 C 0.189 3.811
9 C -0.492 4.492
10 H 0.062 0.938
11 C 0.054 3.946
12 N -0.901 5.901
13 Si 0.897 3.103
14 H -0.281 1.281
15 H -0.289 1.289
16 H -0.274 1.274
17 C 0.065 3.935
18 C -0.115 4.115
19 C -0.111 4.111
20 C -0.082 4.082
21 C -0.075 4.075
22 C -0.120 4.120
23 C -0.121 4.121
24 C -0.131 4.131
25 C -0.119 4.119
26 C -0.118 4.118
27 H 0.063 0.937
28 H 0.064 0.936
29 H 0.075 0.925
30 H 0.068 0.932
31 H 0.066 0.934
32 H 0.100 0.900
33 H 0.062 0.938
34 H 0.045 0.955
35 H -0.014 1.014
36 H 0.259 0.741
37 H 0.023 0.977
38 H 0.088 0.912
39 H 0.072 0.928
40 H 0.053 0.947
41 H 0.060 0.940
42 H 0.065 0.935
43 H 0.073 0.927
44 H 0.070 0.930
45 H 0.120 0.880
46 H 0.119 0.881
47 H 0.118 0.882
48 H 0.119 0.881
49 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -7.551 12.974 13.002 19.859
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.207 4.207
2 C -0.012 4.012
3 O -0.291 6.291
4 C 0.291 3.709
5 O -0.346 6.346
6 C -0.064 4.064
7 N -0.249 5.249
8 C 0.064 3.936
9 C -0.531 4.531
10 H 0.080 0.920
11 C -0.147 4.147
12 N -0.542 5.542
13 Si 0.725 3.275
14 H -0.207 1.207
15 H -0.215 1.215
16 H -0.199 1.199
17 C -0.063 4.063
18 C -0.153 4.153
19 C -0.149 4.149
20 C -0.119 4.119
21 C -0.075 4.075
22 C -0.138 4.138
23 C -0.139 4.139
24 C -0.149 4.149
25 C -0.137 4.137
26 C -0.136 4.136
27 H 0.082 0.918
28 H 0.083 0.917
29 H 0.094 0.906
30 H 0.086 0.914
31 H 0.084 0.916
32 H 0.118 0.882
33 H 0.080 0.920
34 H 0.063 0.937
35 H 0.004 0.996
36 H 0.069 0.931
37 H 0.041 0.959
38 H 0.106 0.894
39 H 0.090 0.910
40 H 0.072 0.928
41 H 0.078 0.922
42 H 0.084 0.916
43 H 0.092 0.908
44 H 0.089 0.911
45 H 0.138 0.862
46 H 0.137 0.863
47 H 0.136 0.864
48 H 0.138 0.862
49 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -7.163 12.231 13.192 19.363
hybrid contribution 0.723 -0.054 -0.699 1.007
sum -6.440 12.176 12.493 18.596
Atomic orbital electron populations
1.21779 0.93172 1.02541 1.03163 1.22891 0.94747 0.81048 1.02559
1.86457 1.25625 1.31745 1.85249 1.23763 0.79928 0.93415 0.73794
1.90761 1.59549 1.42478 1.41777 1.21530 0.92300 0.89786 1.02755
1.61927 1.00486 1.21674 1.40855 1.19909 0.96870 0.93970 0.82840
1.21045 0.98089 1.34488 0.99486 0.91987 1.24952 0.98215 0.96274
0.95231 1.69957 1.37526 1.42223 1.04465 0.86517 0.84413 0.79382
0.77189 1.20728 1.21456 1.19897 1.22026 1.01247 0.88550 0.94450
1.21636 0.99631 0.96436 0.97590 1.21533 1.01486 0.97592 0.94285
1.20668 0.99916 0.93668 0.97678 1.20032 0.94250 0.95382 0.97804
1.21074 1.00013 0.92071 1.00603 1.21129 0.94891 0.97989 0.99846
1.21113 0.94878 0.97907 1.01006 1.21155 0.99786 0.92641 1.00133
1.21130 0.94281 0.98334 0.99835 0.91763 0.91668 0.90626 0.91369
0.91552 0.88155 0.92024 0.93700 0.99592 0.93119 0.95873 0.89377
0.90975 0.92848 0.92166 0.91580 0.90839 0.91124 0.86154 0.86326
0.86427 0.86247 0.85958
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.48 10.29 37.16 0.38 -1.10 16
2 C 0.06 0.86 6.19 37.16 0.23 1.09 16
3 O -0.37 -6.16 10.22 -39.25 -0.40 -6.56 16
4 C 0.45 8.86 7.47 36.01 0.27 9.13 16
5 O -0.46 -11.12 14.29 -18.75 -0.27 -11.39 16
6 C 0.07 1.17 5.39 -4.97 -0.03 1.15 16
7 N -0.52 -11.23 4.09 -237.52 -0.97 -12.21 16
8 C 0.19 5.03 4.23 -4.98 -0.02 5.01 16
9 C -0.49 -14.27 8.54 -34.44 -0.29 -14.56 16
10 H 0.06 1.78 7.77 -52.49 -0.41 1.37 16
11 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16
12 N -0.90 -27.71 13.29 55.43 0.74 -26.97 16
13 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16
14 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16
15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16
16 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16
17 C 0.07 1.17 4.80 -3.83 -0.02 1.15 16
18 C -0.11 -1.63 5.25 -26.73 -0.14 -1.77 16
19 C -0.11 -1.35 5.20 -26.73 -0.14 -1.48 16
20 C -0.08 -0.86 5.34 -27.89 -0.15 -1.01 16
21 C -0.07 -0.81 5.13 -104.63 -0.54 -1.35 16
22 C -0.12 -1.21 9.70 -39.58 -0.38 -1.59 16
23 C -0.12 -1.13 10.05 -39.58 -0.40 -1.53 16
24 C -0.13 -1.22 10.05 -39.58 -0.40 -1.61 16
25 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16
26 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16
27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16
29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
30 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16
31 H 0.07 0.92 8.13 -51.93 -0.42 0.49 16
32 H 0.10 1.45 6.71 -51.93 -0.35 1.11 16
33 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16
34 H 0.04 1.33 5.86 -51.93 -0.30 1.02 16
35 H -0.01 -0.38 8.00 -51.93 -0.42 -0.79 16
36 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16
37 H 0.02 0.39 8.00 -51.93 -0.42 -0.03 16
38 H 0.09 1.78 7.27 -51.93 -0.38 1.40 16
39 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16
40 H 0.05 0.68 6.95 -51.93 -0.36 0.32 16
41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16
42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16
43 H 0.07 0.76 8.09 -51.93 -0.42 0.34 16
44 H 0.07 0.68 8.09 -51.93 -0.42 0.26 16
45 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16
46 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16
47 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16
48 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16
49 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16
LS Contribution 404.15 15.07 6.09 6.09
Total: -1.00 -33.93 404.15 -10.86 -44.79
By element:
Atomic # 1 Polarization: 7.56 SS G_CDS: -8.52 Total: -0.96 kcal
Atomic # 6 Polarization: -7.71 SS G_CDS: -2.50 Total: -10.21 kcal
Atomic # 7 Polarization: -38.94 SS G_CDS: -0.24 Total: -39.18 kcal
Atomic # 8 Polarization: -17.28 SS G_CDS: -0.67 Total: -17.95 kcal
Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal
Total LS contribution 6.09 Total: 6.09 kcal
Total: -33.93 -10.86 -44.79 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207615020.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -29.474 kcal
(2) G-P(sol) polarization free energy of solvation -33.926 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.401 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.859 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.786 kcal
(6) G-S(sol) free energy of system = (1) + (5) -74.260 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds