Wall clock time and date at job start Tue Mar 31 2020 13:45:02
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 O 1.45195 * 109.47107 * 2 1
4 4 C 1.34226 * 117.00157 * 179.97438 * 3 2 1
5 5 O 1.20825 * 119.99811 * 0.02562 * 4 3 2
6 6 C 1.50699 * 120.00324 * 180.02562 * 4 3 2
7 7 N 1.46903 * 109.47320 * 180.02562 * 6 4 3
8 8 C 1.46900 * 111.00178 * 66.04398 * 7 6 4
9 9 C 1.50700 * 109.47052 * 199.84392 * 8 7 6
10 10 H 1.07992 * 119.99951 * 355.06411 * 9 8 7
11 11 C 1.37872 * 119.99816 * 175.06019 * 9 8 7
12 12 N 1.31513 * 120.00131 * 0.02562 * 11 9 8
13 13 Si 1.86803 * 120.00130 * 180.02562 * 11 9 8
14 14 H 1.48497 * 109.47243 * 89.99785 * 13 11 9
15 15 H 1.48499 * 109.47152 * 210.00389 * 13 11 9
16 16 H 1.48498 * 109.46779 * 330.00000 * 13 11 9
17 17 C 1.46900 * 110.99739 * 190.00194 * 7 6 4
18 18 C 1.52994 * 109.47176 * 75.67679 * 17 7 6
19 19 C 1.53003 * 109.47194 * 174.87787 * 18 17 7
20 20 C 1.52998 * 109.47548 * 180.02562 * 19 18 17
21 21 C 1.50693 * 109.47642 * 180.02562 * 20 19 18
22 22 C 1.38238 * 120.00286 * 89.99468 * 21 20 19
23 23 C 1.38232 * 119.99669 * 179.97438 * 22 21 20
24 24 C 1.38234 * 120.00619 * 359.97438 * 23 22 21
25 25 C 1.38237 * 119.99890 * 0.27303 * 24 23 22
26 26 C 1.38238 * 119.99875 * 269.98078 * 21 20 19
27 27 H 1.08999 * 109.47338 * 299.99399 * 1 2 3
28 28 H 1.09000 * 109.47305 * 59.99770 * 1 2 3
29 29 H 1.09000 * 109.47490 * 179.97438 * 1 2 3
30 30 H 1.09003 * 109.46993 * 240.00238 * 2 1 3
31 31 H 1.09001 * 109.47012 * 120.00690 * 2 1 3
32 32 H 1.09000 * 109.46991 * 60.00616 * 6 4 3
33 33 H 1.09003 * 109.47329 * 300.00744 * 6 4 3
34 34 H 1.09000 * 109.46821 * 319.84776 * 8 7 6
35 35 H 1.09000 * 109.46765 * 79.84639 * 8 7 6
36 36 H 0.97001 * 120.00322 * 180.02562 * 12 11 9
37 37 H 1.08997 * 109.47199 * 315.67458 * 17 7 6
38 38 H 1.09006 * 109.46714 * 195.67561 * 17 7 6
39 39 H 1.08999 * 109.47465 * 54.88196 * 18 17 7
40 40 H 1.08993 * 109.47481 * 294.87778 * 18 17 7
41 41 H 1.09003 * 109.47078 * 59.99859 * 19 18 17
42 42 H 1.09005 * 109.47219 * 300.00152 * 19 18 17
43 43 H 1.09003 * 109.47051 * 59.99836 * 20 19 18
44 44 H 1.09005 * 109.46980 * 300.00292 * 20 19 18
45 45 H 1.07994 * 119.99609 * 359.97438 * 22 21 20
46 46 H 1.08003 * 119.99791 * 179.97438 * 23 22 21
47 47 H 1.07997 * 120.00151 * 180.02562 * 24 23 22
48 48 H 1.07999 * 120.00205 * 179.72771 * 25 24 23
49 49 H 1.08007 * 119.99856 * 359.97438 * 26 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 8 2.0140 1.3689 0.0000
4 6 3.3447 1.5448 0.0005
5 8 4.0807 0.5866 0.0005
6 6 3.9207 2.9374 0.0012
7 7 5.3877 2.8605 0.0010
8 6 5.8843 2.2775 -1.2525
9 6 7.2872 1.7666 -1.0478
10 1 7.7917 1.9358 -0.1081
11 6 7.9264 1.0830 -2.0602
12 7 7.3121 0.8773 -3.2048
13 14 9.6652 0.4491 -1.8064
14 1 9.6141 -0.9257 -1.2474
15 1 10.3794 0.4281 -3.1081
16 1 10.3842 1.3411 -0.8616
17 6 5.9841 4.1816 0.2398
18 6 5.8524 4.5404 1.7213
19 6 6.5846 5.8558 1.9945
20 6 6.4535 6.2143 3.4761
21 6 7.1741 7.5101 3.7451
22 6 6.5004 8.7120 3.6326
23 6 7.1614 9.9006 3.8799
24 6 8.4959 9.8874 4.2403
25 6 9.1709 8.6859 4.3479
26 6 8.5088 7.4970 4.1048
27 1 -0.3634 0.5137 0.8900
28 1 -0.3634 0.5139 -0.8900
29 1 -0.3634 -1.0276 -0.0005
30 1 1.8933 -0.5138 -0.8900
31 1 1.8933 -0.5139 0.8899
32 1 3.5845 3.4692 0.8912
33 1 3.5850 3.4699 -0.8887
34 1 5.2371 1.4527 -1.5510
35 1 5.8851 3.0392 -2.0322
36 1 7.7617 0.3961 -3.9169
37 1 5.4662 4.9282 -0.3623
38 1 7.0383 4.1596 -0.0364
39 1 6.2909 3.7478 2.3275
40 1 4.7984 4.6516 1.9759
41 1 6.1460 6.6484 1.3883
42 1 7.6386 5.7446 1.7399
43 1 6.8923 5.4215 4.0820
44 1 5.3995 6.3253 3.7312
45 1 5.4578 8.7222 3.3514
46 1 6.6352 10.8396 3.7916
47 1 9.0121 10.8160 4.4339
48 1 10.2147 8.6758 4.6252
49 1 9.0350 6.5579 4.1934
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001207615020.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:45:02
Heat of formation + Delta-G solvation = -92.601995 kcal
Electronic energy + Delta-G solvation = -26047.309145 eV
Core-core repulsion = 22359.062423 eV
Total energy + Delta-G solvation = -3688.246722 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.78 seconds
Orbital eigenvalues (eV)
-41.47246 -40.14236 -38.80063 -37.35188 -35.91640 -34.65581 -32.75634 -32.38762
-31.70558 -30.10044 -29.16068 -27.02406 -24.84117 -24.24069 -23.39596 -22.92388
-22.19836 -21.56716 -21.19009 -18.71551 -18.61139 -17.62276 -17.56225 -17.38368
-16.64428 -16.50912 -16.03711 -15.89049 -15.61871 -15.31535 -15.06729 -14.79282
-14.28179 -14.20959 -14.06491 -13.96561 -13.70675 -13.56682 -13.47750 -13.33223
-12.98267 -12.83710 -12.67110 -12.58685 -12.46962 -12.42535 -12.18633 -12.04184
-11.92238 -11.68519 -11.56111 -11.47745 -11.37329 -11.22591 -11.10968 -10.55326
-9.76449 -9.51734 -9.07717 -8.17812 -6.25191 0.51480 0.55656 1.31640
1.37476 1.40759 1.50641 1.66848 2.40564 2.92767 3.13513 3.25533
3.84689 3.91640 3.98128 4.00507 4.09314 4.13726 4.19422 4.24579
4.30432 4.32054 4.35108 4.37031 4.47255 4.58571 4.70381 4.70899
4.79886 4.86240 4.88658 4.94062 4.95029 5.01847 5.10478 5.15622
5.19925 5.21777 5.27106 5.32316 5.46329 5.50946 5.55925 5.64209
5.66278 5.68008 5.82479 6.08081 6.19837 6.37042 6.50847 6.87089
6.94749 7.41917 8.93644
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.008346 B = 0.003063 C = 0.002329
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3354.272814 B = 9139.017850 C =12018.092129
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.139 4.139
2 C 0.051 3.949
3 O -0.363 6.363
4 C 0.453 3.547
5 O -0.517 6.517
6 C 0.064 3.936
7 N -0.537 5.537
8 C 0.207 3.793
9 C -0.508 4.508
10 H 0.058 0.942
11 C -0.002 4.002
12 N -0.938 5.938
13 Si 0.966 3.034
14 H -0.279 1.279
15 H -0.279 1.279
16 H -0.261 1.261
17 C 0.066 3.934
18 C -0.101 4.101
19 C -0.102 4.102
20 C -0.075 4.075
21 C -0.090 4.090
22 C -0.129 4.129
23 C -0.127 4.127
24 C -0.137 4.137
25 C -0.130 4.130
26 C -0.137 4.137
27 H 0.076 0.924
28 H 0.068 0.932
29 H 0.099 0.901
30 H 0.052 0.948
31 H 0.065 0.935
32 H 0.145 0.855
33 H 0.076 0.924
34 H 0.011 0.989
35 H -0.037 1.037
36 H 0.262 0.738
37 H 0.038 0.962
38 H 0.057 0.943
39 H 0.057 0.943
40 H 0.077 0.923
41 H 0.067 0.933
42 H 0.050 0.950
43 H 0.071 0.929
44 H 0.085 0.915
45 H 0.134 0.866
46 H 0.140 0.860
47 H 0.139 0.861
48 H 0.134 0.866
49 H 0.122 0.878
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.365 14.567 14.541 22.218
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.196 4.196
2 C -0.022 4.022
3 O -0.280 6.280
4 C 0.296 3.704
5 O -0.404 6.404
6 C -0.065 4.065
7 N -0.263 5.263
8 C 0.081 3.919
9 C -0.547 4.547
10 H 0.076 0.924
11 C -0.199 4.199
12 N -0.579 5.579
13 Si 0.790 3.210
14 H -0.205 1.205
15 H -0.205 1.205
16 H -0.185 1.185
17 C -0.061 4.061
18 C -0.139 4.139
19 C -0.140 4.140
20 C -0.112 4.112
21 C -0.090 4.090
22 C -0.147 4.147
23 C -0.145 4.145
24 C -0.155 4.155
25 C -0.148 4.148
26 C -0.155 4.155
27 H 0.095 0.905
28 H 0.087 0.913
29 H 0.118 0.882
30 H 0.070 0.930
31 H 0.084 0.916
32 H 0.162 0.838
33 H 0.094 0.906
34 H 0.029 0.971
35 H -0.019 1.019
36 H 0.071 0.929
37 H 0.057 0.943
38 H 0.076 0.924
39 H 0.076 0.924
40 H 0.096 0.904
41 H 0.086 0.914
42 H 0.069 0.931
43 H 0.089 0.911
44 H 0.103 0.897
45 H 0.152 0.848
46 H 0.158 0.842
47 H 0.157 0.843
48 H 0.152 0.848
49 H 0.140 0.860
Dipole moment (debyes) X Y Z Total
from point charges -8.008 13.855 14.753 21.766
hybrid contribution 0.886 -0.515 -1.168 1.553
sum -7.122 13.340 13.585 20.329
Atomic orbital electron populations
1.21792 0.89476 1.04396 1.03934 1.23237 0.97556 0.79636 1.01813
1.86458 1.23781 1.33356 1.84402 1.24157 0.80545 0.93514 0.72218
1.90741 1.60947 1.44161 1.44532 1.21717 0.89945 0.89408 1.05386
1.61771 1.03015 1.23737 1.37754 1.19463 0.95514 0.92392 0.84567
1.21382 0.99389 1.34577 0.99323 0.92384 1.25879 1.02710 0.96471
0.94879 1.70086 1.39422 1.43051 1.05361 0.85439 0.79193 0.78686
0.77637 1.20521 1.20487 1.18544 1.22066 0.99370 0.87238 0.97428
1.21514 1.01325 0.96921 0.94171 1.21426 1.00234 0.96559 0.95799
1.20580 1.00827 0.93651 0.96132 1.20126 0.94464 0.95769 0.98671
1.21323 1.00823 0.92059 1.00533 1.21463 0.95138 0.98728 0.99188
1.21449 0.95136 0.98588 1.00324 1.21424 1.00695 0.92646 1.00024
1.21313 0.94671 0.98903 1.00581 0.90518 0.91303 0.88229 0.92997
0.91635 0.83795 0.90583 0.97067 1.01948 0.92942 0.94330 0.92410
0.92447 0.90401 0.91419 0.93146 0.91075 0.89659 0.84774 0.84209
0.84336 0.84793 0.85962
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.46 10.29 71.98 0.74 -1.72 16
2 C 0.05 1.42 6.19 71.98 0.45 1.86 16
3 O -0.36 -11.74 10.22 -51.37 -0.53 -12.26 16
4 C 0.45 17.91 7.47 71.24 0.53 18.44 16
5 O -0.52 -25.77 14.29 21.97 0.31 -25.46 16
6 C 0.06 2.23 5.39 85.56 0.46 2.69 16
7 N -0.54 -23.32 4.09 -905.36 -3.70 -27.02 16
8 C 0.21 11.48 4.23 85.56 0.36 11.84 16
9 C -0.51 -30.44 8.54 25.60 0.22 -30.22 16
10 H 0.06 3.43 7.77 -2.91 -0.02 3.41 16
11 C 0.00 -0.14 5.46 84.65 0.46 0.32 16
12 N -0.94 -59.37 13.29 21.45 0.28 -59.08 16
13 Si 0.97 46.84 29.54 68.60 2.03 48.87 16
14 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16
15 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16
16 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16
17 C 0.07 2.37 4.80 86.30 0.41 2.79 16
18 C -0.10 -2.73 5.25 30.59 0.16 -2.57 16
19 C -0.10 -2.35 5.20 30.59 0.16 -2.19 16
20 C -0.07 -1.45 5.34 29.85 0.16 -1.29 16
21 C -0.09 -1.85 5.13 -19.87 -0.10 -1.95 16
22 C -0.13 -2.37 9.70 22.27 0.22 -2.15 16
23 C -0.13 -2.11 10.05 22.27 0.22 -1.89 16
24 C -0.14 -2.28 10.05 22.27 0.22 -2.05 16
25 C -0.13 -2.39 10.05 22.27 0.22 -2.16 16
26 C -0.14 -2.83 9.70 22.27 0.22 -2.62 16
27 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16
28 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
29 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16
30 H 0.05 1.59 8.13 -2.39 -0.02 1.57 16
31 H 0.07 1.81 8.13 -2.39 -0.02 1.79 16
32 H 0.14 3.72 6.71 -2.39 -0.02 3.71 16
33 H 0.08 2.48 8.12 -2.39 -0.02 2.46 16
34 H 0.01 0.70 5.86 -2.39 -0.01 0.68 16
35 H -0.04 -2.17 8.00 -2.39 -0.02 -2.19 16
36 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16
37 H 0.04 1.25 8.00 -2.39 -0.02 1.24 16
38 H 0.06 2.41 7.27 -2.38 -0.02 2.39 16
39 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16
40 H 0.08 1.73 6.95 -2.39 -0.02 1.71 16
41 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16
42 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16
43 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16
44 H 0.08 1.41 8.09 -2.38 -0.02 1.39 16
45 H 0.13 1.98 8.06 -2.91 -0.02 1.96 16
46 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16
47 H 0.14 1.63 8.06 -2.91 -0.02 1.61 16
48 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16
49 H 0.12 2.40 8.06 -2.91 -0.02 2.37 16
Total: -1.00 -76.70 404.15 4.41 -72.30
By element:
Atomic # 1 Polarization: 14.66 SS G_CDS: 0.89 Total: 15.55 kcal
Atomic # 6 Polarization: -18.00 SS G_CDS: 5.12 Total: -12.88 kcal
Atomic # 7 Polarization: -82.69 SS G_CDS: -3.42 Total: -86.11 kcal
Atomic # 8 Polarization: -37.51 SS G_CDS: -0.21 Total: -37.72 kcal
Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal
Total: -76.70 4.41 -72.30 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001207615020.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.306 kcal
(2) G-P(sol) polarization free energy of solvation -76.704 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.010 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.408 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.296 kcal
(6) G-S(sol) free energy of system = (1) + (5) -92.602 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.78 seconds