Wall clock time and date at job start Tue Mar 31 2020 13:45:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.45196 * 109.47578 * 2 1 4 4 C 1.34223 * 117.00534 * 179.97438 * 3 2 1 5 5 O 1.20826 * 120.00005 * 0.02562 * 4 3 2 6 6 C 1.50702 * 120.00404 * 179.97438 * 4 3 2 7 7 N 1.46903 * 109.47177 * 185.42774 * 6 4 3 8 8 C 1.46902 * 110.99590 * 71.71084 * 7 6 4 9 9 C 1.50703 * 109.47204 * 62.40748 * 8 7 6 10 10 H 1.07990 * 119.99900 * 3.34231 * 9 8 7 11 11 C 1.37877 * 119.99930 * 183.33758 * 9 8 7 12 12 N 1.31509 * 119.99981 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99898 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47144 * 60.00137 * 13 11 9 15 15 H 1.48503 * 109.47049 * 179.97438 * 13 11 9 16 16 H 1.48495 * 109.47372 * 300.00050 * 13 11 9 17 17 C 1.46891 * 110.99893 * 195.65859 * 7 6 4 18 18 C 1.50700 * 109.47274 * 164.47470 * 17 7 6 19 19 C 1.38265 * 119.99990 * 105.26387 * 18 17 7 20 20 C 1.38211 * 119.99843 * 179.74754 * 19 18 17 21 21 C 1.50703 * 119.99821 * 180.27613 * 20 19 18 22 22 C 1.38252 * 120.00072 * 0.55680 * 20 19 18 23 23 C 1.50698 * 119.99774 * 179.72545 * 22 20 19 24 24 C 1.38211 * 120.00145 * 359.69828 * 22 20 19 25 25 C 1.38207 * 120.00289 * 285.54461 * 18 17 7 26 26 C 1.50703 * 119.99844 * 359.97438 * 25 18 17 27 27 H 1.09005 * 109.47542 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47647 * 300.00562 * 1 2 3 29 29 H 1.09002 * 109.46930 * 60.00449 * 1 2 3 30 30 H 1.08997 * 109.47647 * 239.99438 * 2 1 3 31 31 H 1.09003 * 109.46870 * 120.00105 * 2 1 3 32 32 H 1.08998 * 109.46533 * 65.43523 * 6 4 3 33 33 H 1.08995 * 109.46681 * 305.43422 * 6 4 3 34 34 H 1.08994 * 109.47328 * 182.41312 * 8 7 6 35 35 H 1.09004 * 109.47079 * 302.41317 * 8 7 6 36 36 H 0.97010 * 120.00354 * 180.02562 * 12 11 9 37 37 H 1.08997 * 109.47833 * 284.47772 * 17 7 6 38 38 H 1.08998 * 109.47234 * 44.47965 * 17 7 6 39 39 H 1.08000 * 119.99749 * 0.02562 * 19 18 17 40 40 H 1.08997 * 109.47260 * 270.27946 * 21 20 19 41 41 H 1.09002 * 109.47397 * 30.27939 * 21 20 19 42 42 H 1.09000 * 109.47254 * 150.27978 * 21 20 19 43 43 H 1.08998 * 109.46946 * 269.97483 * 23 22 20 44 44 H 1.08997 * 109.47552 * 29.97318 * 23 22 20 45 45 H 1.09005 * 109.47062 * 149.97868 * 23 22 20 46 46 H 1.08001 * 120.00404 * 180.02562 * 24 22 20 47 47 H 1.08997 * 109.47118 * 93.43304 * 26 25 18 48 48 H 1.09004 * 109.47167 * 213.43557 * 26 25 18 49 49 H 1.08997 * 109.46890 * 333.42954 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3821 2.8627 -0.1303 8 6 5.7694 2.4527 -1.4867 9 6 5.2971 3.4852 -2.4777 10 1 4.8106 4.3844 -2.1300 11 6 5.4863 3.2817 -3.8282 12 7 6.0784 2.1865 -4.2516 13 14 4.9015 4.5619 -5.0565 14 1 5.5848 5.8530 -4.7890 15 1 5.2220 4.1089 -6.4339 16 1 3.4336 4.7418 -4.9229 17 6 6.0089 4.1407 0.2324 18 6 7.4840 3.9306 0.4581 19 6 8.3961 4.3585 -0.4889 20 6 9.7493 4.1705 -0.2795 21 6 10.7437 4.6425 -1.3088 22 6 10.1902 3.5443 0.8715 23 6 11.6653 3.3338 1.0968 24 6 9.2782 3.1118 1.8157 25 6 7.9249 3.3050 1.6089 26 6 6.9305 2.8334 2.6384 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 1.8932 -0.5139 0.8900 32 1 3.6644 3.4368 0.9342 33 1 3.5095 3.5002 -0.8379 34 1 6.8542 2.3639 -1.5437 35 1 5.3133 1.4904 -1.7196 36 1 6.2119 2.0435 -5.2017 37 1 5.8635 4.8588 -0.5745 38 1 5.5526 4.5230 1.1455 39 1 8.0513 4.8437 -1.3901 40 1 10.9258 3.8460 -2.0301 41 1 10.3455 5.5161 -1.8249 42 1 11.6792 4.9070 -0.8157 43 1 11.9632 2.3725 0.6783 44 1 12.2250 4.1316 0.6088 45 1 11.8747 3.3449 2.1665 46 1 9.6227 2.6229 2.7150 47 1 6.6792 1.7897 2.4495 48 1 7.3652 2.9281 3.6335 49 1 6.0279 3.4413 2.5769 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231486368.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:28 Heat of formation + Delta-G solvation = -71.510410 kcal Electronic energy + Delta-G solvation = -27797.856912 eV Core-core repulsion = 24110.524789 eV Total energy + Delta-G solvation = -3687.332123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.90337 -39.39168 -36.96073 -35.67745 -33.86765 -32.44387 -31.95543 -31.50776 -29.02609 -28.41105 -27.71708 -25.85879 -24.54484 -23.59882 -23.00594 -21.56990 -21.20835 -19.86625 -18.68342 -17.17445 -16.55444 -16.21397 -15.78816 -15.41559 -14.89007 -14.72702 -14.61689 -14.17233 -14.10796 -13.82566 -13.43674 -13.04404 -12.82771 -12.67438 -12.64508 -12.54703 -12.35227 -12.31566 -12.08696 -11.86089 -11.66547 -11.48717 -11.36845 -11.25116 -11.04281 -11.00543 -10.90844 -10.70983 -10.44748 -10.37026 -10.19462 -10.11717 -9.99001 -9.72203 -9.54690 -8.42669 -8.09434 -7.77250 -7.25844 -6.02978 -4.13322 1.85710 1.95553 2.93820 3.13029 3.25582 3.31773 3.32712 4.19999 4.37652 5.04450 5.07978 5.13273 5.17577 5.21092 5.26815 5.31803 5.42011 5.45032 5.45556 5.49226 5.64608 5.72732 5.73832 5.84438 5.88027 5.90322 5.95509 5.97386 6.02164 6.05537 6.10417 6.14152 6.19214 6.24772 6.33608 6.41189 6.46494 6.69696 6.81309 6.94841 6.98238 7.13126 7.22849 7.31866 7.55255 7.61496 7.91644 7.94772 8.17282 8.25830 8.51815 8.96873 9.52731 11.01902 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.009712 B = 0.004885 C = 0.003523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2882.384414 B = 5730.007750 C = 7946.370566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.466 3.534 5 O -0.487 6.487 6 C 0.068 3.932 7 N -0.519 5.519 8 C 0.187 3.813 9 C -0.557 4.557 10 H 0.056 0.944 11 C 0.070 3.930 12 N -0.883 5.883 13 Si 0.884 3.116 14 H -0.276 1.276 15 H -0.287 1.287 16 H -0.277 1.277 17 C 0.097 3.903 18 C -0.061 4.061 19 C -0.087 4.087 20 C -0.100 4.100 21 C -0.112 4.112 22 C -0.095 4.095 23 C -0.111 4.111 24 C -0.129 4.129 25 C -0.066 4.066 26 C -0.102 4.102 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.036 0.964 35 H 0.041 0.959 36 H 0.263 0.737 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.125 0.875 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.058 0.942 46 H 0.112 0.888 47 H 0.073 0.927 48 H 0.049 0.951 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.021 2.252 11.440 11.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.307 3.693 5 O -0.371 6.371 6 C -0.062 4.062 7 N -0.244 5.244 8 C 0.061 3.939 9 C -0.596 4.596 10 H 0.074 0.926 11 C -0.134 4.134 12 N -0.521 5.521 13 Si 0.712 3.288 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.030 4.030 18 C -0.062 4.062 19 C -0.105 4.105 20 C -0.100 4.100 21 C -0.168 4.168 22 C -0.095 4.095 23 C -0.168 4.168 24 C -0.147 4.147 25 C -0.067 4.067 26 C -0.159 4.159 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.143 0.857 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.077 0.923 46 H 0.130 0.870 47 H 0.092 0.908 48 H 0.068 0.932 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.455 1.449 11.598 11.697 hybrid contribution -0.604 0.936 -1.596 1.946 sum -0.149 2.385 10.002 10.283 Atomic orbital electron populations 1.21779 0.93234 1.02444 1.03256 1.22863 0.94779 0.81210 1.02302 1.86476 1.25689 1.31519 1.85015 1.23807 0.79713 0.93305 0.72429 1.90632 1.59975 1.42908 1.43605 1.21435 0.91708 0.89771 1.03244 1.62244 1.03361 1.27498 1.31291 1.19844 0.97366 0.96191 0.80456 1.21666 1.40026 1.05765 0.92121 0.92555 1.24917 0.94911 0.95204 0.98350 1.69955 1.41783 1.25346 1.15019 0.86784 0.79296 0.82031 0.80681 1.20202 1.21229 1.20250 1.20902 0.90493 0.91980 0.99597 1.19552 0.95096 0.98005 0.93508 1.21023 0.91828 0.99403 0.98286 1.19622 0.94399 1.00471 0.95519 1.20786 0.97497 1.01172 0.97372 1.19576 0.95314 0.99836 0.94746 1.20783 0.92619 1.01877 1.01502 1.20705 0.92492 1.02200 0.99310 1.19647 0.93725 0.97487 0.95838 1.20681 0.97570 1.02217 0.95431 0.90720 0.91786 0.91563 0.91442 0.91759 0.88931 0.89440 0.94606 0.94122 0.92757 0.92346 0.91801 0.85722 0.91435 0.91937 0.91917 0.91656 0.91614 0.92270 0.86985 0.90811 0.93164 0.91711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.15 0.38 -1.20 16 2 C 0.06 0.90 6.19 37.15 0.23 1.13 16 3 O -0.37 -6.41 10.22 -39.24 -0.40 -6.81 16 4 C 0.47 9.29 7.57 36.01 0.27 9.56 16 5 O -0.49 -11.21 14.83 -18.75 -0.28 -11.48 16 6 C 0.07 1.27 5.41 -4.97 -0.03 1.24 16 7 N -0.52 -10.88 4.12 -238.97 -0.98 -11.87 16 8 C 0.19 4.82 4.69 -4.97 -0.02 4.80 16 9 C -0.56 -14.69 7.26 -34.44 -0.25 -14.94 16 10 H 0.06 1.42 6.00 -52.49 -0.32 1.11 16 11 C 0.07 1.92 5.46 -17.82 -0.10 1.82 16 12 N -0.88 -25.97 13.29 55.43 0.74 -25.23 16 13 Si 0.88 20.95 29.54 -169.99 -5.02 15.93 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 15 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 16 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 17 C 0.10 1.81 4.19 -4.98 -0.02 1.79 16 18 C -0.06 -1.14 4.65 -104.62 -0.49 -1.63 16 19 C -0.09 -1.65 8.83 -39.58 -0.35 -2.00 16 20 C -0.10 -1.69 5.88 -104.63 -0.62 -2.31 16 21 C -0.11 -1.59 9.60 36.01 0.35 -1.24 16 22 C -0.09 -1.48 5.88 -104.63 -0.62 -2.09 16 23 C -0.11 -1.34 9.61 36.00 0.35 -1.00 16 24 C -0.13 -2.05 9.37 -39.58 -0.37 -2.42 16 25 C -0.07 -1.14 5.88 -104.62 -0.62 -1.75 16 26 C -0.10 -1.52 9.54 36.01 0.34 -1.18 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 1.04 8.13 -51.93 -0.42 0.62 16 31 H 0.06 0.88 8.13 -51.93 -0.42 0.46 16 32 H 0.09 1.39 7.74 -51.93 -0.40 0.99 16 33 H 0.09 1.73 6.42 -51.93 -0.33 1.40 16 34 H 0.04 1.02 7.03 -51.93 -0.37 0.66 16 35 H 0.04 1.20 6.55 -51.93 -0.34 0.86 16 36 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 37 H 0.06 1.16 6.03 -51.93 -0.31 0.85 16 38 H 0.06 1.01 6.29 -51.93 -0.33 0.68 16 39 H 0.12 2.49 8.00 -52.49 -0.42 2.07 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 0.85 8.09 -51.93 -0.42 0.43 16 42 H 0.06 0.74 5.95 -51.93 -0.31 0.43 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.07 0.71 5.95 -51.93 -0.31 0.40 16 45 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 46 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 47 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 48 H 0.05 0.62 8.11 -51.93 -0.42 0.20 16 49 H 0.06 0.93 6.13 -51.93 -0.32 0.61 16 LS Contribution 391.45 15.07 5.90 5.90 Total: -1.00 -31.50 391.45 -9.55 -41.05 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.95 Total: 3.93 kcal Atomic # 6 Polarization: -9.86 SS G_CDS: -1.55 Total: -11.41 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.25 Total: -37.10 kcal Atomic # 8 Polarization: -17.62 SS G_CDS: -0.68 Total: -18.30 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.50 -9.55 -41.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231486368.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.462 kcal (2) G-P(sol) polarization free energy of solvation -31.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds