Wall clock time and date at job start Tue Mar 31 2020 13:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42896 * 109.47059 * 2 1 4 4 C 1.42903 * 114.00175 * 186.45996 * 3 2 1 5 5 O 1.42903 * 109.46990 * 274.54923 * 4 3 2 6 6 C 1.42905 * 113.99513 * 75.05814 * 5 4 3 7 7 C 1.52997 * 109.46419 * 173.30145 * 6 5 4 8 8 C 1.50707 * 109.47205 * 154.55005 * 4 3 2 9 9 C 1.38234 * 119.99650 * 359.72546 * 8 4 3 10 10 C 1.38238 * 119.99702 * 179.80817 * 9 8 4 11 11 C 1.38244 * 119.99881 * 0.42267 * 10 9 8 12 12 C 1.50692 * 120.00012 * 179.79130 * 11 10 9 13 13 N 1.46904 * 109.46960 * 270.02156 * 12 11 10 14 14 C 1.47486 * 110.99824 * 265.97135 * 13 12 11 15 15 C 1.53512 * 87.93300 * 221.29503 * 14 13 12 16 16 C 1.50695 * 114.16963 * 139.66839 * 15 14 13 17 17 H 1.07999 * 120.00565 * 266.16073 * 16 15 14 18 18 C 1.37880 * 119.99490 * 86.16333 * 16 15 14 19 19 N 1.31513 * 120.00558 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99665 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47460 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47132 * 120.00026 * 20 18 16 23 23 H 1.48501 * 109.47267 * 240.00091 * 20 18 16 24 24 C 1.47472 * 111.00217 * 170.00179 * 13 12 11 25 25 C 1.38238 * 119.99716 * 359.81128 * 11 10 9 26 26 C 1.38229 * 119.99511 * 180.02562 * 8 4 3 27 27 H 1.09000 * 109.47165 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47636 * 300.00312 * 1 2 3 29 29 H 1.09000 * 109.47033 * 60.00350 * 1 2 3 30 30 H 1.08994 * 109.47521 * 239.99982 * 2 1 3 31 31 H 1.09000 * 109.47033 * 119.99650 * 2 1 3 32 32 H 1.08995 * 109.46655 * 34.55206 * 4 3 2 33 33 H 1.08998 * 109.46878 * 293.29805 * 6 5 4 34 34 H 1.08995 * 109.46979 * 53.30409 * 6 5 4 35 35 H 1.09010 * 109.47113 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47318 * 299.99391 * 7 6 5 37 37 H 1.08995 * 109.47596 * 59.99998 * 7 6 5 38 38 H 1.07998 * 120.00571 * 0.02562 * 9 8 4 39 39 H 1.07991 * 120.00154 * 180.21301 * 10 9 8 40 40 H 1.08995 * 109.47398 * 30.01988 * 12 11 10 41 41 H 1.09005 * 109.47070 * 150.02406 * 12 11 10 42 42 H 1.08998 * 113.47900 * 336.06186 * 14 13 12 43 43 H 1.09005 * 113.47404 * 106.53152 * 14 13 12 44 44 H 1.08999 * 114.34501 * 272.37105 * 15 14 13 45 45 H 0.96996 * 120.00205 * 179.97438 * 19 18 16 46 46 H 1.09003 * 113.48050 * 253.46973 * 24 13 12 47 47 H 1.09006 * 113.48019 * 23.93392 * 24 13 12 48 48 H 1.08003 * 119.99548 * 179.97438 * 25 11 10 49 49 H 1.08001 * 120.00763 * 359.97438 * 26 8 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4230 1.4629 -0.1469 5 8 4.0459 1.3446 1.1338 6 6 4.0828 0.0091 1.6410 7 6 4.9118 -0.0253 2.9264 8 6 3.7581 2.8043 -0.7465 9 6 2.7466 3.6912 -1.0646 10 6 3.0541 4.9232 -1.6110 11 6 4.3727 5.2648 -1.8472 12 6 4.7077 6.6060 -2.4472 13 7 4.7301 6.4954 -3.9119 14 6 6.0968 6.2354 -4.4014 15 6 5.8179 7.2267 -5.5399 16 6 6.9780 8.1303 -5.8693 17 1 7.0492 9.1062 -5.4123 18 6 7.9485 7.7111 -6.7544 19 7 7.8622 6.5226 -7.3107 20 14 9.3862 8.8315 -7.1634 21 1 9.2510 10.1049 -6.4115 22 1 10.6574 8.1643 -6.7835 23 1 9.3929 9.1162 -8.6209 24 6 4.8180 7.8262 -4.5411 25 6 5.3838 4.3759 -1.5335 26 6 5.0765 3.1452 -0.9840 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.7861 0.6711 -0.8021 33 1 3.0679 -0.3267 1.8541 34 1 4.5351 -0.6489 0.8991 35 1 4.9404 -1.0441 3.3132 36 1 5.9267 0.3105 2.7134 37 1 4.4596 0.6327 3.6683 38 1 1.7163 3.4231 -0.8831 39 1 2.2642 5.6175 -1.8563 40 1 3.9547 7.3356 -2.1494 41 1 5.6865 6.9286 -2.0921 42 1 6.8749 6.5700 -3.7152 43 1 6.2479 5.2118 -4.7442 44 1 5.3558 6.7809 -6.4207 45 1 8.5448 6.2279 -7.9336 46 1 3.8853 8.1510 -5.0024 47 1 5.2547 8.5855 -3.8923 48 1 6.4139 4.6427 -1.7185 49 1 5.8664 2.4505 -0.7396 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234860076.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:26:37 Heat of formation + Delta-G solvation = -36.643894 kcal Electronic energy + Delta-G solvation = -26376.322776 eV Core-core repulsion = 22690.502579 eV Total energy + Delta-G solvation = -3685.820197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.05527 -39.18623 -38.13174 -36.64627 -33.44478 -32.53650 -31.47080 -31.05751 -30.61200 -28.78335 -26.23133 -24.78630 -24.37785 -23.73202 -22.84739 -22.22589 -22.15624 -20.37841 -18.59619 -17.81228 -17.65630 -16.86575 -16.51377 -15.54619 -15.19031 -15.04618 -15.00402 -14.76433 -14.30945 -14.06265 -13.96276 -13.84959 -13.25512 -13.21207 -13.11244 -12.87780 -12.47373 -12.36077 -12.21223 -12.17862 -11.89343 -11.86274 -11.56551 -11.46746 -11.22026 -11.05039 -10.84288 -10.81859 -10.52510 -10.26662 -10.23818 -9.91336 -9.72875 -9.30120 -8.93844 -8.68523 -8.48588 -8.36094 -7.97105 -6.05420 -4.09928 1.40293 1.64703 3.16279 3.27571 3.35987 3.39505 3.47444 3.99715 4.40305 4.44654 4.53042 4.71933 4.73909 4.84746 4.86547 4.92611 5.01084 5.09138 5.13365 5.22815 5.24608 5.29596 5.35624 5.35756 5.52764 5.57003 5.61355 5.69367 5.78234 5.78941 5.88043 5.91048 6.12941 6.17906 6.27402 6.33664 6.47994 6.54367 6.61040 6.68730 6.73686 6.85318 6.89309 6.93403 7.16030 7.16785 7.22928 7.73242 7.91405 8.08287 8.37632 8.93653 9.55080 11.04145 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.020611 B = 0.002281 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.163543 B =12274.547350 C =12816.434990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.043 3.957 3 O -0.385 6.385 4 C 0.295 3.705 5 O -0.381 6.381 6 C 0.044 3.956 7 C -0.151 4.151 8 C -0.100 4.100 9 C -0.085 4.085 10 C -0.111 4.111 11 C -0.045 4.045 12 C 0.052 3.948 13 N -0.478 5.478 14 C 0.006 3.994 15 C 0.041 3.959 16 C -0.515 4.515 17 H 0.058 0.942 18 C 0.066 3.934 19 N -0.886 5.886 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.006 4.006 25 C -0.114 4.114 26 C -0.091 4.091 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.048 0.952 35 H 0.070 0.930 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.071 0.929 41 H 0.050 0.950 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.064 0.936 45 H 0.261 0.739 46 H 0.062 0.938 47 H 0.054 0.946 48 H 0.123 0.877 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.540 -14.551 17.763 25.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.033 4.033 3 O -0.306 6.306 4 C 0.200 3.800 5 O -0.302 6.302 6 C -0.032 4.032 7 C -0.208 4.208 8 C -0.100 4.100 9 C -0.103 4.103 10 C -0.130 4.130 11 C -0.046 4.046 12 C -0.076 4.076 13 N -0.200 5.200 14 C -0.123 4.123 15 C 0.022 3.978 16 C -0.554 4.554 17 H 0.076 0.924 18 C -0.137 4.137 19 N -0.523 5.523 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.135 4.135 25 C -0.133 4.133 26 C -0.109 4.109 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.090 0.910 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.141 0.859 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -11.054 -14.811 17.621 25.536 hybrid contribution 1.583 0.460 -0.015 1.648 sum -9.471 -14.351 17.606 24.610 Atomic orbital electron populations 1.21746 0.93375 1.02282 1.03422 1.22852 0.96296 0.83870 1.00301 1.88020 1.22677 1.26615 1.93251 1.21656 0.78532 0.95551 0.84222 1.88156 1.77946 1.27883 1.36203 1.22797 0.99679 0.84286 0.96472 1.21748 1.00621 1.02159 0.96287 1.19061 0.94149 0.94175 1.02649 1.20903 0.99256 0.92733 0.97371 1.21003 0.96012 0.96561 0.99388 1.19917 0.93196 0.96113 0.95335 1.21667 1.00653 0.93087 0.92178 1.68927 1.27153 1.20016 1.03896 1.24111 0.87494 1.01543 0.99107 1.20095 0.92831 0.92617 0.92252 1.21076 1.06702 1.01726 1.25855 0.92375 1.25026 0.98154 0.95060 0.95433 1.69980 1.34547 1.18306 1.29493 0.86567 0.82443 0.80940 0.78234 1.19719 1.21003 1.20919 1.24026 1.00170 0.90903 0.98359 1.21009 0.99440 0.93544 0.99284 1.20742 0.95006 0.96789 0.98373 0.91092 0.91718 0.91579 0.93119 0.92686 0.91922 0.92627 0.93391 0.91151 0.91691 0.91691 0.85310 0.85952 0.91013 0.93183 0.92859 0.91878 0.91813 0.92929 0.91946 0.92774 0.85894 0.86220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 10.28 37.16 0.38 -0.67 16 2 C 0.04 0.36 6.20 37.16 0.23 0.59 16 3 O -0.38 -4.54 8.69 -59.04 -0.51 -5.05 16 4 C 0.30 3.59 3.11 36.01 0.11 3.70 16 5 O -0.38 -4.67 10.11 -59.04 -0.60 -5.27 16 6 C 0.04 0.38 6.03 37.16 0.22 0.60 16 7 C -0.15 -1.10 10.28 37.16 0.38 -0.72 16 8 C -0.10 -1.41 5.56 -104.62 -0.58 -1.99 16 9 C -0.08 -1.21 9.38 -39.58 -0.37 -1.58 16 10 C -0.11 -1.67 9.70 -39.58 -0.38 -2.05 16 11 C -0.05 -0.73 5.46 -104.62 -0.57 -1.30 16 12 C 0.05 0.90 4.94 -4.98 -0.02 0.88 16 13 N -0.48 -9.75 6.32 -246.09 -1.55 -11.30 16 14 C 0.01 0.14 7.28 -7.55 -0.05 0.09 16 15 C 0.04 1.03 3.77 -91.24 -0.34 0.69 16 16 C -0.52 -13.99 8.82 -34.44 -0.30 -14.29 16 17 H 0.06 1.55 7.81 -52.49 -0.41 1.14 16 18 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 19 N -0.89 -25.58 13.26 55.43 0.74 -24.85 16 20 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 21 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.01 -0.13 7.25 -7.55 -0.05 -0.18 16 25 C -0.11 -1.78 9.70 -39.58 -0.38 -2.17 16 26 C -0.09 -1.30 9.61 -39.58 -0.38 -1.68 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.38 7.94 -51.93 -0.41 -0.03 16 31 H 0.06 0.40 5.01 -51.93 -0.26 0.14 16 32 H 0.06 0.67 7.53 -51.93 -0.39 0.28 16 33 H 0.06 0.43 5.27 -51.93 -0.27 0.16 16 34 H 0.05 0.35 7.99 -51.93 -0.41 -0.06 16 35 H 0.07 0.37 8.14 -51.92 -0.42 -0.06 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.13 1.70 7.01 -52.49 -0.37 1.33 16 39 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.07 1.13 8.02 -51.93 -0.42 0.71 16 41 H 0.05 0.86 7.25 -51.93 -0.38 0.49 16 42 H 0.05 1.22 7.37 -51.93 -0.38 0.84 16 43 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 44 H 0.06 1.76 8.11 -51.93 -0.42 1.34 16 45 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 47 H 0.05 1.11 7.87 -51.93 -0.41 0.70 16 48 H 0.12 1.87 8.06 -52.48 -0.42 1.44 16 49 H 0.12 1.49 8.06 -52.49 -0.42 1.07 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -30.13 396.87 -11.51 -41.64 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: -8.32 Total: 1.23 kcal Atomic # 6 Polarization: -16.16 SS G_CDS: -2.22 Total: -18.38 kcal Atomic # 7 Polarization: -35.33 SS G_CDS: -0.82 Total: -36.15 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: -1.11 Total: -10.32 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -30.13 -11.51 -41.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234860076.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.001 kcal (2) G-P(sol) polarization free energy of solvation -30.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds