Wall clock time and date at job start Tue Mar 31 2020 13:45:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45198 * 109.46919 * 2 1 4 4 C 1.34232 * 117.00087 * 179.97438 * 3 2 1 5 5 O 1.20823 * 119.99695 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00188 * 179.97438 * 4 3 2 7 7 N 1.46903 * 109.47415 * 181.37471 * 6 4 3 8 8 C 1.46902 * 111.00050 * 287.08063 * 7 6 4 9 9 C 1.50699 * 109.46629 * 305.76457 * 8 7 6 10 10 H 1.07995 * 120.00173 * 4.20161 * 9 8 7 11 11 C 1.37881 * 119.99873 * 184.20493 * 9 8 7 12 12 N 1.31515 * 119.99927 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00129 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47206 * 359.97438 * 13 11 9 15 15 H 1.48501 * 109.47113 * 119.99644 * 13 11 9 16 16 H 1.48495 * 109.47151 * 239.99812 * 13 11 9 17 17 C 1.46895 * 111.00110 * 163.11865 * 7 6 4 18 18 H 1.08995 * 109.47327 * 302.56467 * 17 7 6 19 19 C 1.52998 * 109.47309 * 62.56633 * 17 7 6 20 20 C 1.53006 * 109.47182 * 182.56443 * 17 7 6 21 21 C 1.50698 * 109.47018 * 64.99980 * 20 17 7 22 22 C 1.38239 * 119.99870 * 90.00348 * 21 20 17 23 23 C 1.38230 * 119.99837 * 179.97438 * 22 21 20 24 24 C 1.38234 * 120.00358 * 359.97438 * 23 22 21 25 25 C 1.50696 * 119.99980 * 179.97438 * 24 23 22 26 26 C 1.38239 * 119.99804 * 0.02562 * 24 23 22 27 27 C 1.38230 * 119.99837 * 359.97438 * 26 24 23 28 28 H 1.08997 * 109.46990 * 299.99832 * 1 2 3 29 29 H 1.08998 * 109.47114 * 60.00300 * 1 2 3 30 30 H 1.09006 * 109.47016 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47680 * 239.99948 * 2 1 3 32 32 H 1.09004 * 109.46913 * 119.99316 * 2 1 3 33 33 H 1.08997 * 109.46972 * 61.37851 * 6 4 3 34 34 H 1.09002 * 109.47603 * 301.37736 * 6 4 3 35 35 H 1.08988 * 109.47516 * 65.76548 * 8 7 6 36 36 H 1.09007 * 109.46563 * 185.76870 * 8 7 6 37 37 H 0.97003 * 120.00130 * 180.02562 * 12 11 9 38 38 H 1.09005 * 109.47054 * 72.90345 * 19 17 7 39 39 H 1.08991 * 109.47360 * 192.91205 * 19 17 7 40 40 H 1.09004 * 109.46799 * 312.91245 * 19 17 7 41 41 H 1.08997 * 109.46947 * 305.00166 * 20 17 7 42 42 H 1.08999 * 109.47235 * 185.00516 * 20 17 7 43 43 H 1.07995 * 119.99719 * 0.25201 * 22 21 20 44 44 H 1.08006 * 120.00086 * 179.97438 * 23 22 21 45 45 H 1.09006 * 109.47143 * 90.00517 * 25 24 23 46 46 H 1.09002 * 109.47064 * 210.00196 * 25 24 23 47 47 H 1.09003 * 109.47658 * 330.00547 * 25 24 23 48 48 H 1.08001 * 119.99778 * 179.97438 * 26 24 23 49 49 H 1.08000 * 119.99898 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5867 0.0015 6 6 3.9206 2.9374 0.0000 7 7 5.3873 2.8608 -0.0325 8 6 5.9203 2.4198 1.2635 9 6 5.3951 3.3174 2.3541 10 1 4.6791 4.0909 2.1189 11 6 5.8287 3.1511 3.6524 12 7 6.7003 2.2088 3.9389 13 14 5.1773 4.2632 5.0045 14 1 4.2147 5.2346 4.4256 15 1 4.4927 3.4412 6.0345 16 1 6.3068 4.9982 5.6280 17 6 5.9730 4.1472 -0.4325 18 1 5.5798 4.4382 -1.4065 19 6 5.6134 5.2151 0.6024 20 6 7.4946 4.0106 -0.5168 21 6 7.8523 3.0492 -1.6207 22 6 8.0548 3.5168 -2.9058 23 6 8.3834 2.6350 -3.9183 24 6 8.5100 1.2857 -3.6458 25 6 8.8677 0.3244 -4.7498 26 6 8.3075 0.8182 -2.3608 27 6 7.9789 1.6999 -1.3482 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8901 33 1 3.6042 3.4618 0.9016 34 1 3.5655 3.4773 -0.8779 35 1 5.6069 1.3937 1.4551 36 1 7.0090 2.4698 1.2445 37 1 7.0051 2.0915 4.8523 38 1 6.1903 5.0484 1.5121 39 1 5.8442 6.2020 0.2014 40 1 4.5492 5.1557 0.8311 41 1 7.8786 3.6343 0.4314 42 1 7.9358 4.9851 -0.7263 43 1 7.9607 4.5716 -3.1176 44 1 8.5413 3.0003 -4.9224 45 1 9.9518 0.2277 -4.8104 46 1 8.4272 -0.6502 -4.5398 47 1 8.4830 0.7004 -5.6979 48 1 8.4060 -0.2361 -2.1480 49 1 7.8203 1.3346 -0.3444 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255793305.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:45:42 Heat of formation + Delta-G solvation = -54.200267 kcal Electronic energy + Delta-G solvation = -28102.956686 eV Core-core repulsion = 24416.375188 eV Total energy + Delta-G solvation = -3686.581499 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 319.193 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.91744 -39.15189 -37.70550 -35.84348 -33.46623 -32.43527 -31.58000 -30.61033 -30.41725 -27.91500 -27.78550 -26.13319 -24.30611 -22.97758 -22.30831 -22.03658 -20.77440 -20.14310 -18.64634 -17.31883 -16.53882 -16.17451 -15.75637 -15.44310 -15.35226 -14.76025 -14.59374 -14.38083 -14.08501 -13.60425 -13.35499 -13.27199 -12.93719 -12.84898 -12.73809 -12.36541 -12.35633 -12.15559 -11.72426 -11.67118 -11.59867 -11.32921 -11.31862 -11.15598 -11.05697 -10.89789 -10.68236 -10.54992 -10.42836 -10.30482 -10.13792 -10.04815 -9.82054 -9.57058 -8.97598 -8.41012 -8.38687 -7.93689 -7.22982 -6.04256 -4.08556 1.82771 1.92754 2.99389 3.13759 3.23519 3.33032 3.33907 4.24473 4.37577 4.94622 5.08215 5.13605 5.15609 5.21276 5.25801 5.33940 5.41471 5.46161 5.48501 5.54368 5.69767 5.72977 5.77971 5.89289 5.89712 5.94117 5.95677 5.99532 6.05751 6.10225 6.17111 6.25911 6.28094 6.40362 6.53229 6.59289 6.71238 6.76910 6.91123 6.98172 7.05079 7.22133 7.28328 7.33025 7.53237 7.61708 7.93220 7.97815 8.23567 8.25466 8.55934 8.96698 9.52707 11.01049 Molecular weight = 319.19amu Principal moments of inertia in cm(-1) A = 0.008615 B = 0.005231 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3249.548370 B = 5351.619121 C = 7432.265705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.371 6.371 4 C 0.465 3.535 5 O -0.486 6.486 6 C 0.066 3.934 7 N -0.518 5.518 8 C 0.177 3.823 9 C -0.557 4.557 10 H 0.073 0.927 11 C 0.066 3.934 12 N -0.886 5.886 13 Si 0.881 3.119 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.284 1.284 17 C 0.104 3.896 18 H 0.060 0.940 19 C -0.183 4.183 20 C -0.078 4.078 21 C -0.059 4.059 22 C -0.123 4.123 23 C -0.130 4.130 24 C -0.105 4.105 25 C -0.109 4.109 26 C -0.121 4.121 27 C -0.080 4.080 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.041 0.959 36 H 0.043 0.957 37 H 0.261 0.739 38 H 0.098 0.902 39 H 0.028 0.972 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.065 0.935 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.059 0.941 48 H 0.114 0.886 49 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.097 0.223 -12.727 13.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.011 4.011 3 O -0.289 6.289 4 C 0.307 3.693 5 O -0.370 6.370 6 C -0.063 4.063 7 N -0.242 5.242 8 C 0.052 3.948 9 C -0.596 4.596 10 H 0.090 0.910 11 C -0.137 4.137 12 N -0.525 5.525 13 Si 0.709 3.291 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.005 4.005 18 H 0.079 0.921 19 C -0.241 4.241 20 C -0.116 4.116 21 C -0.059 4.059 22 C -0.141 4.141 23 C -0.148 4.148 24 C -0.105 4.105 25 C -0.165 4.165 26 C -0.139 4.139 27 C -0.098 4.098 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.059 0.941 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.117 0.883 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.109 0.891 42 H 0.084 0.916 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.078 0.922 48 H 0.132 0.868 49 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -2.645 -0.557 -12.942 13.222 hybrid contribution -0.640 0.952 1.579 1.952 sum -3.285 0.395 -11.364 11.835 Atomic orbital electron populations 1.21778 0.93286 1.02419 1.03220 1.22850 0.94730 0.81301 1.02256 1.86478 1.25836 1.31439 1.85127 1.23870 0.79627 0.93400 0.72423 1.90617 1.59895 1.42936 1.43582 1.21471 0.91769 0.89521 1.03538 1.62341 1.01484 1.26298 1.34103 1.20011 0.96416 0.96563 0.81846 1.22196 1.26184 1.17725 0.93482 0.90966 1.24917 0.95083 0.95241 0.98465 1.69960 1.31150 1.31776 1.19582 0.86716 0.78919 0.80871 0.82611 1.19734 1.21107 1.21003 1.21410 0.93468 0.88733 0.96849 0.92142 1.22993 1.02344 0.96508 1.02304 1.20807 0.95576 0.97198 0.97976 1.19812 0.97229 0.94644 0.94254 1.20940 1.01329 0.99027 0.92830 1.20807 1.02476 0.92928 0.98556 1.19767 1.01520 0.94327 0.94871 1.20717 1.01116 0.98164 0.96536 1.20990 1.00985 0.99403 0.92559 1.21183 0.96097 0.92673 0.99819 0.91600 0.91803 0.90745 0.91793 0.91501 0.88835 0.89337 0.94072 0.93890 0.92936 0.88292 0.95324 0.92876 0.89144 0.91595 0.86902 0.87148 0.91864 0.91968 0.92182 0.86841 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.29 37.16 0.38 -1.21 16 2 C 0.06 0.91 6.19 37.16 0.23 1.14 16 3 O -0.37 -6.48 10.22 -39.26 -0.40 -6.88 16 4 C 0.47 9.34 7.77 36.00 0.28 9.62 16 5 O -0.49 -11.18 14.56 -18.75 -0.27 -11.45 16 6 C 0.07 1.25 4.66 -4.98 -0.02 1.23 16 7 N -0.52 -10.48 3.77 -229.53 -0.87 -11.35 16 8 C 0.18 4.27 4.11 -4.98 -0.02 4.25 16 9 C -0.56 -13.95 5.45 -34.44 -0.19 -14.14 16 10 H 0.07 1.73 3.70 -52.49 -0.19 1.54 16 11 C 0.07 1.75 5.46 -17.82 -0.10 1.65 16 12 N -0.89 -25.19 13.29 55.43 0.74 -24.46 16 13 Si 0.88 20.54 29.54 -169.99 -5.02 15.52 16 14 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 C 0.10 1.84 2.32 -67.71 -0.16 1.69 16 18 H 0.06 0.99 8.03 -51.93 -0.42 0.58 16 19 C -0.18 -3.28 7.46 37.16 0.28 -3.00 16 20 C -0.08 -1.35 4.56 -27.88 -0.13 -1.47 16 21 C -0.06 -1.01 4.95 -104.62 -0.52 -1.53 16 22 C -0.12 -1.85 9.70 -39.58 -0.38 -2.23 16 23 C -0.13 -1.83 9.70 -39.59 -0.38 -2.22 16 24 C -0.10 -1.52 5.88 -104.62 -0.62 -2.14 16 25 C -0.11 -1.22 10.01 36.00 0.36 -0.86 16 26 C -0.12 -1.98 9.70 -39.58 -0.38 -2.36 16 27 C -0.08 -1.45 9.31 -39.59 -0.37 -1.82 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 32 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 33 H 0.09 1.86 5.00 -51.93 -0.26 1.60 16 34 H 0.09 1.42 7.90 -51.93 -0.41 1.01 16 35 H 0.04 1.16 6.55 -51.94 -0.34 0.82 16 36 H 0.04 1.10 4.80 -51.93 -0.25 0.85 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 38 H 0.10 2.06 5.80 -51.93 -0.30 1.76 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.96 5.31 -51.93 -0.28 0.68 16 41 H 0.09 1.79 5.87 -51.93 -0.30 1.49 16 42 H 0.07 0.99 8.09 -51.93 -0.42 0.57 16 43 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 44 H 0.11 1.29 8.06 -52.48 -0.42 0.87 16 45 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.67 8.09 -51.93 -0.42 0.25 16 47 H 0.06 0.59 8.09 -51.93 -0.42 0.17 16 48 H 0.11 1.70 8.06 -52.49 -0.42 1.27 16 49 H 0.13 2.60 6.62 -52.49 -0.35 2.25 16 LS Contribution 383.54 15.07 5.78 5.78 Total: -1.00 -29.60 383.54 -9.50 -39.11 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -7.72 Total: 7.12 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -1.74 Total: -13.39 kcal Atomic # 7 Polarization: -35.67 SS G_CDS: -0.13 Total: -35.80 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: -0.67 Total: -18.33 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -29.60 -9.50 -39.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255793305.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.092 kcal (2) G-P(sol) polarization free energy of solvation -29.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds