Wall clock time and date at job start Tue Mar 31 2020 13:40:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 O 1.45198 * 109.47246 * 2 1
4 4 C 1.34230 * 117.00323 * 180.02562 * 3 2 1
5 5 O 1.20828 * 119.99759 * 0.02562 * 4 3 2
6 6 C 1.50699 * 120.00241 * 179.97438 * 4 3 2
7 7 C 1.53001 * 109.47226 * 180.02562 * 6 4 3
8 8 C 1.52995 * 109.47272 * 180.02562 * 7 6 4
9 9 C 1.53001 * 109.47272 * 180.02562 * 8 7 6
10 10 H 1.09000 * 109.47179 * 55.23144 * 9 8 7
11 11 C 1.52997 * 109.47026 * 175.23259 * 9 8 7
12 12 N 1.46504 * 109.46887 * 295.23390 * 9 8 7
13 13 C 1.36931 * 120.00010 * 306.22170 * 12 9 8
14 14 H 1.08005 * 120.00003 * 34.40592 * 13 12 9
15 15 C 1.38815 * 120.00119 * 214.68116 * 13 12 9
16 16 N 1.31614 * 119.99587 * 22.22778 * 15 13 12
17 17 Si 1.86794 * 119.99906 * 202.22995 * 15 13 12
18 18 H 1.48504 * 109.47118 * 90.00006 * 17 15 13
19 19 H 1.48500 * 109.47041 * 209.99830 * 17 15 13
20 20 H 1.48502 * 109.47412 * 330.00131 * 17 15 13
21 21 C 1.46502 * 119.99753 * 126.22700 * 12 9 8
22 22 C 1.50707 * 109.47027 * 269.99721 * 21 12 9
23 23 C 1.38231 * 119.99784 * 269.73041 * 22 21 12
24 24 C 1.38233 * 119.99713 * 179.76769 * 23 22 21
25 25 C 1.38237 * 120.00203 * 0.50308 * 24 23 22
26 26 C 1.38242 * 119.99462 * 359.74700 * 25 24 23
27 27 C 1.38229 * 120.00324 * 0.02562 * 26 25 24
28 28 H 1.08998 * 109.47353 * 300.00037 * 1 2 3
29 29 H 1.09002 * 109.47521 * 59.99743 * 1 2 3
30 30 H 1.09003 * 109.47176 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.46709 * 240.00189 * 2 1 3
32 32 H 1.08992 * 109.47536 * 120.00190 * 2 1 3
33 33 H 1.08996 * 109.47273 * 60.00218 * 6 4 3
34 34 H 1.08999 * 109.46913 * 300.00182 * 6 4 3
35 35 H 1.08996 * 109.46953 * 59.99855 * 7 6 4
36 36 H 1.09008 * 109.46856 * 300.00336 * 7 6 4
37 37 H 1.08996 * 109.47507 * 59.99879 * 8 7 6
38 38 H 1.08998 * 109.47149 * 299.99782 * 8 7 6
39 39 H 1.08992 * 109.47470 * 293.58631 * 11 9 8
40 40 H 1.08997 * 109.47230 * 53.58679 * 11 9 8
41 41 H 1.09003 * 109.46700 * 173.58465 * 11 9 8
42 42 H 0.96998 * 119.99950 * 180.02562 * 16 15 13
43 43 H 1.08999 * 109.47388 * 29.99774 * 21 12 9
44 44 H 1.08994 * 109.47011 * 149.99534 * 21 12 9
45 45 H 1.08000 * 119.99918 * 359.97438 * 23 22 21
46 46 H 1.08001 * 120.00100 * 180.23517 * 24 23 22
47 47 H 1.08002 * 120.00012 * 179.72991 * 25 24 23
48 48 H 1.08000 * 119.99382 * 179.97438 * 26 25 24
49 49 H 1.07996 * 120.00177 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0139 1.3689 0.0000
4 6 3.3447 1.5448 -0.0005
5 8 4.0807 0.5866 -0.0015
6 6 3.9207 2.9374 -0.0012
7 6 5.4486 2.8573 -0.0023
8 6 6.0334 4.2711 -0.0023
9 6 7.5613 4.1911 -0.0041
10 1 7.8925 3.5872 -0.8490
11 6 8.1456 5.6000 -0.1240
12 7 8.0196 3.5768 1.2445
13 6 7.6148 4.0888 2.4482
14 1 6.6253 4.5094 2.5509
15 6 8.4782 4.0726 3.5351
16 7 9.7774 3.9897 3.3421
17 14 7.7960 4.1683 5.2713
18 1 7.5327 2.7967 5.7761
19 1 8.7829 4.8399 6.1546
20 1 6.5299 4.9444 5.2637
21 6 8.9110 2.4149 1.2052
22 6 8.0892 1.1519 1.1802
23 6 7.7290 0.5382 2.3653
24 6 6.9711 -0.6176 2.3425
25 6 6.5823 -1.1656 1.1344
26 6 6.9470 -0.5546 -0.0508
27 6 7.7009 0.6038 -0.0280
28 1 -0.3634 0.5138 0.8899
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 1.8932 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8899
33 1 3.5851 3.4698 0.8888
34 1 3.5844 3.4693 -0.8912
35 1 5.7838 2.3251 -0.8925
36 1 5.7852 2.3252 0.8875
37 1 5.6982 4.8030 0.8880
38 1 5.6968 4.8035 -0.8919
39 1 7.8993 6.0135 -1.1018
40 1 7.7252 6.2352 0.6556
41 1 9.2289 5.5548 -0.0110
42 1 10.3808 3.9780 4.1015
43 1 9.5310 2.4627 0.3099
44 1 9.5487 2.4162 2.0891
45 1 8.0368 0.9637 3.3090
46 1 6.6864 -1.0950 3.2685
47 1 5.9939 -2.0710 1.1166
48 1 6.6436 -0.9830 -0.9947
49 1 7.9861 1.0808 -0.9539
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001258125641.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:40:49
Heat of formation + Delta-G solvation = -58.300017 kcal
Electronic energy + Delta-G solvation = -28575.128062 eV
Core-core repulsion = 24888.368785 eV
Total energy + Delta-G solvation = -3686.759277 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.84 seconds
Orbital eigenvalues (eV)
-40.22631 -38.51638 -36.87568 -36.33891 -33.79819 -32.05180 -31.50779 -31.24222
-30.01523 -28.70559 -27.00407 -25.44258 -23.64415 -23.07256 -21.86515 -21.65458
-20.28975 -20.10068 -19.47802 -17.42183 -16.65187 -16.49862 -15.93551 -15.61519
-15.33657 -14.64045 -14.31468 -14.17824 -14.04766 -13.55690 -13.45947 -13.20497
-12.97864 -12.85154 -12.58506 -12.36248 -12.10709 -11.99383 -11.83564 -11.64748
-11.49530 -11.32847 -11.14780 -10.91109 -10.76734 -10.61852 -10.50540 -10.47876
-10.34866 -10.24052 -10.05032 -9.93544 -9.83371 -9.71899 -9.47187 -8.46134
-8.03536 -7.75316 -6.56773 -5.75824 -3.28512 2.25139 2.32481 2.50155
2.82853 3.37007 3.45189 3.46537 4.48291 4.69283 4.80587 4.81228
4.95222 5.15025 5.26220 5.34135 5.36843 5.54079 5.54290 5.62652
5.68038 5.68474 5.76038 5.82723 5.84309 5.95640 6.04224 6.13209
6.24047 6.36986 6.38573 6.43963 6.47088 6.60985 6.63032 6.65223
6.70534 6.88245 6.92988 6.97457 7.11190 7.15097 7.31210 7.32525
7.36536 7.56992 7.81194 7.86502 7.94157 8.03012 8.54052 9.21322
9.85652 10.42258 11.24105
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.011585 B = 0.004733 C = 0.004476
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2416.371082 B = 5914.607765 C = 6254.693980
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.151 4.151
2 C 0.062 3.938
3 O -0.368 6.368
4 C 0.452 3.548
5 O -0.486 6.486
6 C -0.111 4.111
7 C -0.098 4.098
8 C -0.124 4.124
9 C 0.171 3.829
10 H 0.046 0.954
11 C -0.149 4.149
12 N -0.567 5.567
13 C -0.241 4.241
14 H 0.062 0.938
15 C 0.011 3.989
16 N -0.885 5.885
17 Si 0.887 3.113
18 H -0.287 1.287
19 H -0.293 1.293
20 H -0.279 1.279
21 C 0.170 3.830
22 C -0.068 4.068
23 C -0.103 4.103
24 C -0.130 4.130
25 C -0.130 4.130
26 C -0.105 4.105
27 C -0.119 4.119
28 H 0.065 0.935
29 H 0.064 0.936
30 H 0.076 0.924
31 H 0.066 0.934
32 H 0.067 0.933
33 H 0.099 0.901
34 H 0.094 0.906
35 H 0.058 0.942
36 H 0.091 0.909
37 H 0.067 0.933
38 H 0.045 0.955
39 H 0.029 0.971
40 H 0.053 0.947
41 H 0.051 0.949
42 H 0.253 0.747
43 H 0.029 0.971
44 H 0.107 0.893
45 H 0.114 0.886
46 H 0.103 0.897
47 H 0.100 0.900
48 H 0.101 0.899
49 H 0.103 0.897
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -11.978 -5.816 -7.944 15.505
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.209 4.209
2 C -0.012 4.012
3 O -0.286 6.286
4 C 0.295 3.705
5 O -0.371 6.371
6 C -0.149 4.149
7 C -0.136 4.136
8 C -0.163 4.163
9 C 0.064 3.936
10 H 0.065 0.935
11 C -0.208 4.208
12 N -0.286 5.286
13 C -0.371 4.371
14 H 0.079 0.921
15 C -0.189 4.189
16 N -0.528 5.528
17 Si 0.717 3.283
18 H -0.214 1.214
19 H -0.219 1.219
20 H -0.204 1.204
21 C 0.045 3.955
22 C -0.071 4.071
23 C -0.122 4.122
24 C -0.148 4.148
25 C -0.148 4.148
26 C -0.123 4.123
27 C -0.138 4.138
28 H 0.084 0.916
29 H 0.083 0.917
30 H 0.095 0.905
31 H 0.084 0.916
32 H 0.086 0.914
33 H 0.117 0.883
34 H 0.112 0.888
35 H 0.076 0.924
36 H 0.110 0.890
37 H 0.086 0.914
38 H 0.064 0.936
39 H 0.048 0.952
40 H 0.072 0.928
41 H 0.070 0.930
42 H 0.063 0.937
43 H 0.047 0.953
44 H 0.125 0.875
45 H 0.132 0.868
46 H 0.121 0.879
47 H 0.118 0.882
48 H 0.119 0.881
49 H 0.121 0.879
Dipole moment (debyes) X Y Z Total
from point charges -11.611 -6.085 -7.830 15.269
hybrid contribution -0.579 -0.182 1.040 1.204
sum -12.190 -6.267 -6.789 15.296
Atomic orbital electron populations
1.21792 0.93067 1.02662 1.03337 1.22906 0.94965 0.80928 1.02385
1.86514 1.25609 1.31786 1.84702 1.24081 0.80057 0.93597 0.72808
1.90735 1.59838 1.42840 1.43718 1.21542 0.98607 0.90003 1.04738
1.21461 0.89345 0.98489 1.04279 1.21938 0.98229 0.95468 1.00694
1.20382 0.91346 0.92606 0.89223 0.93528 1.22134 1.01376 0.98698
0.98629 1.43778 1.56162 1.27962 1.00733 1.18940 0.95970 1.35328
0.86876 0.92065 1.25003 0.94658 1.00834 0.98413 1.69959 1.01068
1.52204 1.29618 0.86531 0.78363 0.77844 0.85542 1.21400 1.21931
1.20430 1.20110 0.91359 0.81655 1.02410 1.21110 0.97647 0.96433
0.91924 1.21011 0.98146 0.94605 0.98462 1.20992 0.99698 0.97111
0.96995 1.20705 1.01256 1.00018 0.92860 1.20752 0.98343 0.96248
0.96971 1.20884 0.99623 0.96012 0.97298 0.91576 0.91670 0.90540
0.91576 0.91437 0.88289 0.88797 0.92368 0.89048 0.91446 0.93649
0.95219 0.92763 0.93003 0.93654 0.95258 0.87549 0.86810 0.87902
0.88170 0.88125 0.87858
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.21 10.29 37.15 0.38 -0.83 16
2 C 0.06 0.69 6.19 37.15 0.23 0.92 16
3 O -0.37 -5.00 10.22 -39.26 -0.40 -5.40 16
4 C 0.45 6.90 7.96 36.01 0.29 7.19 16
5 O -0.49 -8.58 15.05 -18.75 -0.28 -8.87 16
6 C -0.11 -1.56 5.81 -27.88 -0.16 -1.72 16
7 C -0.10 -1.65 3.58 -26.73 -0.10 -1.75 16
8 C -0.12 -2.12 4.52 -26.73 -0.12 -2.24 16
9 C 0.17 3.33 2.74 -67.93 -0.19 3.14 16
10 H 0.05 0.88 7.85 -51.93 -0.41 0.47 16
11 C -0.15 -2.84 9.17 37.16 0.34 -2.50 16
12 N -0.57 -12.82 1.81 -167.02 -0.30 -13.12 16
13 C -0.24 -6.04 8.53 -15.06 -0.13 -6.17 16
14 H 0.06 1.56 6.50 -52.48 -0.34 1.22 16
15 C 0.01 0.28 4.96 -17.43 -0.09 0.19 16
16 N -0.89 -24.18 11.31 55.49 0.63 -23.55 16
17 Si 0.89 21.04 29.61 -169.99 -5.03 16.00 16
18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16
19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16
20 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16
21 C 0.17 3.85 5.37 -5.19 -0.03 3.82 16
22 C -0.07 -1.41 4.30 -104.62 -0.45 -1.86 16
23 C -0.10 -2.16 9.70 -39.59 -0.38 -2.55 16
24 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16
25 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16
26 C -0.10 -1.85 9.37 -39.58 -0.37 -2.22 16
27 C -0.12 -2.22 7.98 -39.59 -0.32 -2.54 16
28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16
29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16
30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16
31 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16
32 H 0.07 0.78 8.13 -51.93 -0.42 0.36 16
33 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16
34 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16
35 H 0.06 1.00 7.50 -51.93 -0.39 0.61 16
36 H 0.09 1.88 6.18 -51.92 -0.32 1.56 16
37 H 0.07 1.25 6.57 -51.93 -0.34 0.90 16
38 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16
39 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16
40 H 0.05 1.10 7.98 -51.93 -0.41 0.68 16
41 H 0.05 1.08 8.14 -51.93 -0.42 0.65 16
42 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16
43 H 0.03 0.64 7.92 -51.93 -0.41 0.23 16
44 H 0.11 2.74 5.27 -51.93 -0.27 2.46 16
45 H 0.11 2.56 8.06 -52.49 -0.42 2.14 16
46 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16
47 H 0.10 1.57 8.06 -52.49 -0.42 1.15 16
48 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16
49 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16
LS Contribution 395.69 15.07 5.96 5.96
Total: -1.00 -28.05 395.69 -9.69 -37.74
By element:
Atomic # 1 Polarization: 14.25 SS G_CDS: -8.38 Total: 5.87 kcal
Atomic # 6 Polarization: -12.75 SS G_CDS: -1.88 Total: -14.63 kcal
Atomic # 7 Polarization: -37.00 SS G_CDS: 0.33 Total: -36.68 kcal
Atomic # 8 Polarization: -13.58 SS G_CDS: -0.68 Total: -14.26 kcal
Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.00 kcal
Total LS contribution 5.96 Total: 5.96 kcal
Total: -28.05 -9.69 -37.74 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001258125641.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.562 kcal
(2) G-P(sol) polarization free energy of solvation -28.049 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.610 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.738 kcal
(6) G-S(sol) free energy of system = (1) + (5) -58.300 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.84 seconds