Wall clock time and date at job start Tue Mar 31 2020 13:40:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52993 * 1
3 3 O 1.45198 * 109.47246 * 2 1
4 4 C 1.34230 * 117.00323 * 180.02562 * 3 2 1
5 5 O 1.20828 * 119.99759 * 0.02562 * 4 3 2
6 6 C 1.50699 * 120.00241 * 179.97438 * 4 3 2
7 7 C 1.53001 * 109.47226 * 180.02562 * 6 4 3
8 8 C 1.52995 * 109.47272 * 180.02562 * 7 6 4
9 9 C 1.53001 * 109.47272 * 180.02562 * 8 7 6
10 10 H 1.09000 * 109.47179 * 55.23144 * 9 8 7
11 11 C 1.52997 * 109.47026 * 175.23259 * 9 8 7
12 12 N 1.46504 * 109.46887 * 295.23390 * 9 8 7
13 13 C 1.36931 * 120.00010 * 306.22170 * 12 9 8
14 14 H 1.08005 * 120.00003 * 34.40592 * 13 12 9
15 15 C 1.38815 * 120.00119 * 214.68116 * 13 12 9
16 16 N 1.31614 * 119.99587 * 22.22778 * 15 13 12
17 17 Si 1.86794 * 119.99906 * 202.22995 * 15 13 12
18 18 H 1.48504 * 109.47118 * 90.00006 * 17 15 13
19 19 H 1.48500 * 109.47041 * 209.99830 * 17 15 13
20 20 H 1.48502 * 109.47412 * 330.00131 * 17 15 13
21 21 C 1.46502 * 119.99753 * 126.22700 * 12 9 8
22 22 C 1.50707 * 109.47027 * 269.99721 * 21 12 9
23 23 C 1.38231 * 119.99784 * 269.73041 * 22 21 12
24 24 C 1.38233 * 119.99713 * 179.76769 * 23 22 21
25 25 C 1.38237 * 120.00203 * 0.50308 * 24 23 22
26 26 C 1.38242 * 119.99462 * 359.74700 * 25 24 23
27 27 C 1.38229 * 120.00324 * 0.02562 * 26 25 24
28 28 H 1.08998 * 109.47353 * 300.00037 * 1 2 3
29 29 H 1.09002 * 109.47521 * 59.99743 * 1 2 3
30 30 H 1.09003 * 109.47176 * 179.97438 * 1 2 3
31 31 H 1.09003 * 109.46709 * 240.00189 * 2 1 3
32 32 H 1.08992 * 109.47536 * 120.00190 * 2 1 3
33 33 H 1.08996 * 109.47273 * 60.00218 * 6 4 3
34 34 H 1.08999 * 109.46913 * 300.00182 * 6 4 3
35 35 H 1.08996 * 109.46953 * 59.99855 * 7 6 4
36 36 H 1.09008 * 109.46856 * 300.00336 * 7 6 4
37 37 H 1.08996 * 109.47507 * 59.99879 * 8 7 6
38 38 H 1.08998 * 109.47149 * 299.99782 * 8 7 6
39 39 H 1.08992 * 109.47470 * 293.58631 * 11 9 8
40 40 H 1.08997 * 109.47230 * 53.58679 * 11 9 8
41 41 H 1.09003 * 109.46700 * 173.58465 * 11 9 8
42 42 H 0.96998 * 119.99950 * 180.02562 * 16 15 13
43 43 H 1.08999 * 109.47388 * 29.99774 * 21 12 9
44 44 H 1.08994 * 109.47011 * 149.99534 * 21 12 9
45 45 H 1.08000 * 119.99918 * 359.97438 * 23 22 21
46 46 H 1.08001 * 120.00100 * 180.23517 * 24 23 22
47 47 H 1.08002 * 120.00012 * 179.72991 * 25 24 23
48 48 H 1.08000 * 119.99382 * 179.97438 * 26 25 24
49 49 H 1.07996 * 120.00177 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 8 2.0139 1.3689 0.0000
4 6 3.3447 1.5448 -0.0005
5 8 4.0807 0.5866 -0.0015
6 6 3.9207 2.9374 -0.0012
7 6 5.4486 2.8573 -0.0023
8 6 6.0334 4.2711 -0.0023
9 6 7.5613 4.1911 -0.0041
10 1 7.8925 3.5872 -0.8490
11 6 8.1456 5.6000 -0.1240
12 7 8.0196 3.5768 1.2445
13 6 7.6148 4.0888 2.4482
14 1 6.6253 4.5094 2.5509
15 6 8.4782 4.0726 3.5351
16 7 9.7774 3.9897 3.3421
17 14 7.7960 4.1683 5.2713
18 1 7.5327 2.7967 5.7761
19 1 8.7829 4.8399 6.1546
20 1 6.5299 4.9444 5.2637
21 6 8.9110 2.4149 1.2052
22 6 8.0892 1.1519 1.1802
23 6 7.7290 0.5382 2.3653
24 6 6.9711 -0.6176 2.3425
25 6 6.5823 -1.1656 1.1344
26 6 6.9470 -0.5546 -0.0508
27 6 7.7009 0.6038 -0.0280
28 1 -0.3634 0.5138 0.8899
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0277 -0.0005
31 1 1.8932 -0.5138 -0.8900
32 1 1.8933 -0.5138 0.8899
33 1 3.5851 3.4698 0.8888
34 1 3.5844 3.4693 -0.8912
35 1 5.7838 2.3251 -0.8925
36 1 5.7852 2.3252 0.8875
37 1 5.6982 4.8030 0.8880
38 1 5.6968 4.8035 -0.8919
39 1 7.8993 6.0135 -1.1018
40 1 7.7252 6.2352 0.6556
41 1 9.2289 5.5548 -0.0110
42 1 10.3808 3.9780 4.1015
43 1 9.5310 2.4627 0.3099
44 1 9.5487 2.4162 2.0891
45 1 8.0368 0.9637 3.3090
46 1 6.6864 -1.0950 3.2685
47 1 5.9939 -2.0710 1.1166
48 1 6.6436 -0.9830 -0.9947
49 1 7.9861 1.0808 -0.9539
RHF calculation, no. of doubly occupied orbitals= 61
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001258125641.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 13:40:48
Heat of formation + Delta-G solvation = -68.950559 kcal
Electronic energy + Delta-G solvation = -28575.589904 eV
Core-core repulsion = 24888.368785 eV
Total energy + Delta-G solvation = -3687.221119 eV
No. of doubly occupied orbitals = 61
Molecular weight
(most abundant/longest-lived isotopes) = 319.193 amu
Computer time = 0.92 seconds
Orbital eigenvalues (eV)
-41.35196 -40.06411 -38.33788 -37.57270 -35.33028 -33.50640 -32.94559 -32.42639
-31.51840 -30.37487 -28.32722 -27.26979 -25.05674 -24.34652 -23.18411 -23.02618
-21.80659 -21.31196 -21.15482 -18.60968 -18.17966 -17.70920 -17.25633 -17.08960
-16.89211 -16.14512 -15.86162 -15.70482 -15.58855 -15.10636 -14.79091 -14.41905
-14.19928 -14.08891 -13.99713 -13.63707 -13.49284 -13.40118 -13.10618 -12.99856
-12.93528 -12.74307 -12.59721 -12.48536 -12.28751 -12.23318 -12.19281 -11.95502
-11.64803 -11.63480 -11.53050 -11.45007 -11.31625 -11.22136 -11.07942 -10.42757
-9.53165 -9.29100 -8.46639 -7.72283 -5.26737 0.75640 0.80539 1.35266
1.43447 1.48638 1.52705 1.82190 2.55325 3.13935 3.37159 3.85039
3.85687 4.01056 4.03159 4.13778 4.19423 4.26383 4.29464 4.37407
4.38648 4.45210 4.52803 4.59284 4.72675 4.75646 4.82742 4.88840
4.90727 4.93817 4.97787 5.04441 5.06439 5.14959 5.17122 5.18502
5.37336 5.39787 5.42669 5.56749 5.63021 5.67755 5.72049 5.80024
5.83481 5.84332 5.91587 6.15984 6.40171 6.59138 6.90621 7.27111
7.99364 8.50542 9.23813
Molecular weight = 319.19amu
Principal moments of inertia in cm(-1)
A = 0.011585 B = 0.004733 C = 0.004476
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2416.371082 B = 5914.607765 C = 6254.693980
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C 0.055 3.945
3 O -0.369 6.369
4 C 0.453 3.547
5 O -0.515 6.515
6 C -0.107 4.107
7 C -0.086 4.086
8 C -0.114 4.114
9 C 0.163 3.837
10 H 0.055 0.945
11 C -0.140 4.140
12 N -0.575 5.575
13 C -0.227 4.227
14 H 0.058 0.942
15 C -0.034 4.034
16 N -0.915 5.915
17 Si 0.931 3.069
18 H -0.294 1.294
19 H -0.299 1.299
20 H -0.271 1.271
21 C 0.175 3.825
22 C -0.076 4.076
23 C -0.125 4.125
24 C -0.132 4.132
25 C -0.125 4.125
26 C -0.098 4.098
27 C -0.116 4.116
28 H 0.065 0.935
29 H 0.070 0.930
30 H 0.098 0.902
31 H 0.068 0.932
32 H 0.059 0.941
33 H 0.104 0.896
34 H 0.127 0.873
35 H 0.056 0.944
36 H 0.052 0.948
37 H 0.051 0.949
38 H 0.080 0.920
39 H 0.066 0.934
40 H 0.036 0.964
41 H 0.025 0.975
42 H 0.246 0.754
43 H 0.029 0.971
44 H 0.073 0.927
45 H 0.084 0.916
46 H 0.119 0.881
47 H 0.127 0.873
48 H 0.125 0.875
49 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.736 -6.525 -10.035 18.985
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.019 4.019
3 O -0.286 6.286
4 C 0.297 3.703
5 O -0.403 6.403
6 C -0.145 4.145
7 C -0.124 4.124
8 C -0.153 4.153
9 C 0.058 3.942
10 H 0.074 0.926
11 C -0.199 4.199
12 N -0.294 5.294
13 C -0.358 4.358
14 H 0.075 0.925
15 C -0.230 4.230
16 N -0.560 5.560
17 Si 0.762 3.238
18 H -0.222 1.222
19 H -0.226 1.226
20 H -0.196 1.196
21 C 0.049 3.951
22 C -0.078 4.078
23 C -0.145 4.145
24 C -0.150 4.150
25 C -0.143 4.143
26 C -0.116 4.116
27 C -0.135 4.135
28 H 0.084 0.916
29 H 0.090 0.910
30 H 0.116 0.884
31 H 0.086 0.914
32 H 0.077 0.923
33 H 0.122 0.878
34 H 0.144 0.856
35 H 0.075 0.925
36 H 0.070 0.930
37 H 0.069 0.931
38 H 0.098 0.902
39 H 0.085 0.915
40 H 0.055 0.945
41 H 0.044 0.956
42 H 0.055 0.945
43 H 0.048 0.952
44 H 0.090 0.910
45 H 0.102 0.898
46 H 0.137 0.863
47 H 0.145 0.855
48 H 0.143 0.857
49 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges -14.409 -6.787 -9.935 18.771
hybrid contribution 0.214 -0.033 1.598 1.612
sum -14.194 -6.820 -8.337 17.818
Atomic orbital electron populations
1.21807 0.90573 1.04200 1.03602 1.23174 0.96916 0.79690 1.02095
1.86510 1.24606 1.33309 1.84203 1.24249 0.80450 0.93633 0.72018
1.90708 1.60560 1.43766 1.45247 1.21496 0.96477 0.89936 1.06558
1.21222 0.91401 0.97541 1.02227 1.21811 0.96035 0.95932 1.01527
1.20620 0.93143 0.92560 0.87925 0.92637 1.22034 0.99407 0.98379
1.00096 1.43897 1.55890 1.28397 1.01253 1.19043 0.95377 1.33474
0.87884 0.92466 1.25457 0.94839 1.02063 1.00672 1.70073 1.01836
1.54551 1.29576 0.85814 0.77889 0.77216 0.82923 1.22166 1.22630
1.19581 1.19871 0.91467 0.83041 1.00688 1.20831 0.98189 0.95993
0.92833 1.20889 0.99999 0.96141 0.97428 1.21161 0.99062 0.96302
0.98524 1.21011 1.00544 1.00563 0.92215 1.21020 0.97094 0.95436
0.98081 1.20934 0.99463 0.96382 0.96691 0.91627 0.91049 0.88377
0.91364 0.92285 0.87753 0.85551 0.92503 0.92964 0.93050 0.90169
0.91532 0.94459 0.95619 0.94458 0.95216 0.90970 0.89753 0.86298
0.85519 0.85679 0.86706
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.92 10.29 71.98 0.74 -1.18 16
2 C 0.05 1.10 6.19 71.98 0.45 1.55 16
3 O -0.37 -9.15 10.22 -51.42 -0.53 -9.68 16
4 C 0.45 12.83 7.96 71.24 0.57 13.40 16
5 O -0.52 -17.22 15.05 21.96 0.33 -16.89 16
6 C -0.11 -2.72 5.81 29.85 0.17 -2.55 16
7 C -0.09 -2.74 3.58 30.59 0.11 -2.63 16
8 C -0.11 -3.66 4.52 30.59 0.14 -3.52 16
9 C 0.16 6.20 2.74 44.99 0.12 6.32 16
10 H 0.06 2.00 7.85 -2.39 -0.02 1.98 16
11 C -0.14 -5.21 9.17 71.98 0.66 -4.55 16
12 N -0.57 -26.47 1.81 -682.33 -1.24 -27.70 16
13 C -0.23 -11.64 8.53 84.04 0.72 -10.93 16
14 H 0.06 2.96 6.50 -2.91 -0.02 2.94 16
15 C -0.03 -1.82 4.96 84.86 0.42 -1.40 16
16 N -0.91 -52.34 11.31 21.65 0.24 -52.10 16
17 Si 0.93 44.65 29.61 68.60 2.03 46.69 16
18 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16
19 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16
20 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16
21 C 0.18 8.20 5.37 85.63 0.46 8.66 16
22 C -0.08 -3.18 4.30 -19.86 -0.09 -3.26 16
23 C -0.13 -5.41 9.70 22.27 0.22 -5.19 16
24 C -0.13 -4.89 10.05 22.27 0.22 -4.66 16
25 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16
26 C -0.10 -3.23 9.37 22.27 0.21 -3.02 16
27 C -0.12 -4.18 7.98 22.27 0.18 -4.01 16
28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16
29 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16
30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16
31 H 0.07 1.34 8.13 -2.39 -0.02 1.32 16
32 H 0.06 1.28 8.13 -2.39 -0.02 1.26 16
33 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16
34 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16
35 H 0.06 1.81 7.50 -2.39 -0.02 1.79 16
36 H 0.05 2.11 6.18 -2.38 -0.01 2.09 16
37 H 0.05 1.82 6.57 -2.39 -0.02 1.81 16
38 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16
39 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
40 H 0.04 1.48 7.98 -2.39 -0.02 1.46 16
41 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16
42 H 0.25 13.89 8.31 -92.71 -0.77 13.12 16
43 H 0.03 1.33 7.92 -2.39 -0.02 1.32 16
44 H 0.07 3.94 5.27 -2.39 -0.01 3.93 16
45 H 0.08 4.06 8.06 -2.91 -0.02 4.04 16
46 H 0.12 3.91 8.06 -2.91 -0.02 3.88 16
47 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16
48 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16
49 H 0.11 3.83 8.06 -2.91 -0.02 3.81 16
Total: -1.00 -62.77 395.69 7.27 -55.51
By element:
Atomic # 1 Polarization: 24.16 SS G_CDS: 0.90 Total: 25.06 kcal
Atomic # 6 Polarization: -26.41 SS G_CDS: 5.52 Total: -20.89 kcal
Atomic # 7 Polarization: -78.81 SS G_CDS: -0.99 Total: -79.80 kcal
Atomic # 8 Polarization: -26.37 SS G_CDS: -0.20 Total: -26.56 kcal
Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.69 kcal
Total: -62.77 7.27 -55.51 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001258125641.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.444 kcal
(2) G-P(sol) polarization free energy of solvation -62.774 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.218 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.267 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.507 kcal
(6) G-S(sol) free energy of system = (1) + (5) -68.951 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.92 seconds